Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-RGA.54
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 299 / 5e-87 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 275 / 2e-77 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 211 / 4e-57 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G50180 198 / 9e-53 NB-ARC domain-containing disease resistance protein (.1) AT1G59780 198 / 1e-52 NB-ARC domain-containing disease resistance protein (.1) AT5G43470 196 / 6e-52 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G07040 193 / 7e-51 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G48620 189 / 2e-49 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 184 / 3e-48 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59124 184 / 3e-48 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G143820 [exp] 1341 / 0 AT3G14470 316 / 3e-93 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143700 [exp] 1340 / 0 AT3G14470 286 / 2e-82 NB-ARC domain-containing disease resistance protein (.1) Potri.017G143433 [exp] 1335 / 0 AT3G14470 321 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.017G140132 [exp] 1239 / 0 AT3G14470 292 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.004G076700 [exp] 418 / 5e-135 AT3G14470 143 / 4e-35 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 367 / 2e-111 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 366 / 4e-111 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127800 [exp] 358 / 2e-108 AT3G14470 437 / 1e-135 NB-ARC domain-containing disease resistance protein (.1) Potri.001G379700 [exp] 347 / 1e-107 AT3G14470 572 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005218 [exp] 352 / 2e-105 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 331 / 1e-98 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 329 / 1e-96 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 327 / 1e-95 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 323 / 1e-93 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 315 / 2e-92 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 315 / 9e-92 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 310 / 1e-89 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 295 / 2e-84 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10011278 [exp] 288 / 4e-83 AT3G14470 356 / 1e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.018G017900.1 pacid=42800841 polypeptide=Potri.018G017900.1.p locus=Potri.018G017900 ID=Potri.018G017900.1.v4.1 annot-version=v4.1 ATGAAAATGGAAGAAATTTTTGCAGCCGAGATTGCAAAATCCCTTTTAGGGAAGTTAGGCTCTTTTGCTGTTCAAGAATTTCGTTTGGCATGGGGACTTG AAGATGACCTTGCACGTCTTGAAGAGAGATTGAAAGCCATCAACGTGGTGCTGTCGGATGCTGAGAAGCAACAATCAAAGAATGACAGGATTCGGCTCTG GCTCCATATGCTCAGAGAAGTCTTGTATGATGCAGAGGACGTGCTGGACGAAATCGAGTGCGAAACTTTGCAAAGGCAGGTGGTGAAAACTAAAGGGAGC ACCAGCAGAAAGGTACGACGCTTCTTTTCAAGCTCTAATAAGATTGCACTCCGTTTAAGAATGGGTCATAAGATAAAGAGCATCATAGAAAGACTAGCTG AGATTTCATCTCTTAAGTCTGACTTCAACCTCAGCGAGCAGACTATTGATTGTAGTCATGTCTTGCATGATGAAACAGAGATGAACCGATCCTTTGAGAG CTTTTCCGGTCTTATCGGAAGAGATGAAGACAAAGAACGCATCATCAACCTTTTAGTAGCACCTTTTAAGGTTGGTGATGCACATCCCCTTGTCCTTCCG ATAGTTGGAATGGGAGGACTGGGGAAGACATCTCTTGCCAAATCGGTGTGTGATGCTGAAAATGTAAAAAGTCATTTTGAACGGAAGATGGAGGTATGTG TTTCAGATGATTTTTCCTTAAAACAAGTGATACAAAAGATTATTAAATCTGCAACCGGGGAAAGATGTGCGGATTTGGATGGGGGTGAACTAATACAAAA ACTTGAAGCAATTCTGAATGGTAGGAAATACTTGCTTCTTTTGGATGATGTTTGGAATGAAGATGCTCAAAAATGGTTGTTGTTGAAGCCTCTGTTATCA AAAGGTGCTGATGGAAGTAAGATTATAGTGACTACCCGTAGTCAACGTGTTGCTGAGATTATGGGTACTGTCAATACTGCATACAACCTAAGTCTTCTTG GTCAAGAGGACTGTCTGTCGTTGTTTTACAAGTGTGCATTCAAGGAAGGGCAAATGGAGTTGTATCCAAATTTGGTTGGAATTGGGAAAGAAATAGTGGC AAAATGCAAGCAAGTTCCTCTGGCAGTGATTAACATGGGGACTCAACTGTATGGTAAAACTGATGAAACAGAGTGGAAATCGGTGAGAGATAGTGAGAAG TGGGAAGAAGAGGGAGATGGTATTTTACCTGCCTTGAAAATAAGTTATCAAAGACTGCCGACTCACTTGAAAAGATGCCTTCTTTATTGTTCGGTTTTTC CAAAAGATTACCTATTCGCAGATCTCTTGTTGGTGCAATTTTGGATGGCACATGGGCTCATTCTTCAATCATCAAATCCAAATGAGAAGTTGGAAGATGT TGGCTTGCGTTATGTGCGCGAGTTGATCTCAAGATGTTTCTTCCAAGATTATGAGGATAGGATAGTTATAGCTTACTTTAAAATGCATGATTTAATGCAT GATCTTGCATCATCATTGGCTCAAAATGAGTTTTCAATCATAAGCTCTCAAAACCACCGATTTTCCAAAACGACCCGTCATTTGTCAGTCATCGACTCCA TTTTTTTTTTCCACCGAATTCTCCCCAAGTTTTCAAATGAGTTCGACCATGTGCGGTCAATCCTCTTTGCAGATATTATAGTGGGGCCTACATGCAAAAC AGACTTTGAGAAATGTTTGTCAGGATTTAAGCATTTGCGGTCTTTGGAATTAATGGATGATTCTGAATTCAAGGATTTTCCGGAGAGGATTGGCGCCTTG AAACATTTGAGATATCTCCATTTTTTTTGGAACACAGAAATGACAAGACTCCCGAAGTCTCTTTTCAAATTGCAAAATTTGCAAGCTCTGGTTGTGGGTG CAAAAGGATTAGAAGAGTTGCCCAAAGATGTGAGGTACATGATCAACCTTAGATTTTTATTTCTAGTTACTCAGCAGAAGCGGTTGCCAGAAGGTGGGAT TGGGTGCTTGAAATTTCTTCAAACTTTATACATTTTTCTATGTCAAAATCTCGAAACTTTGTGCGAAGATATGCATGGTCTTAAATGTCTTCGAAAATTG TTTATTGTTGGATGTGATAGCTTGATTTCTTTACCACGAAGCATACAATGCTTAACTACTCTGGAAGAATTTTGTATTCTTGATTGTGAAAAGCTTGATT TGATGACAATAGAAGAAGACAAAGAGAAAAAAATTCAACCACTTTCCCCTCCTCTTCGTATTGTAATATTTGACAACTTACCAGAAACTCTTACCTTACC AGAACAACTTCTTCAAGGATCTGCAGAATCCTTACAAACATTCATCATAAAAAACAGTCCAAACATTAGAGAAATGCCAGAATGTATCAGCAATTTAAAT AAACTTCAAAATCTTGAGATCACTCGTTGTCCAAGGTTGAGCAAAAGGTGCCGAAGAGGAACAGGAGAAGATTGGCCCAAGATCAAACATATCCGTAGAA TCGAGGTTGACGATGATGACAGTGATGAAGAAACATCTCATTAG
AA sequence Show only first row Show all	>Potri.018G017900.1 pacid=42800841 polypeptide=Potri.018G017900.1.p locus=Potri.018G017900 ID=Potri.018G017900.1.v4.1 annot-version=v4.1 MKMEEIFAAEIAKSLLGKLGSFAVQEFRLAWGLEDDLARLEERLKAINVVLSDAEKQQSKNDRIRLWLHMLREVLYDAEDVLDEIECETLQRQVVKTKGS TSRKVRRFFSSSNKIALRLRMGHKIKSIIERLAEISSLKSDFNLSEQTIDCSHVLHDETEMNRSFESFSGLIGRDEDKERIINLLVAPFKVGDAHPLVLP IVGMGGLGKTSLAKSVCDAENVKSHFERKMEVCVSDDFSLKQVIQKIIKSATGERCADLDGGELIQKLEAILNGRKYLLLLDDVWNEDAQKWLLLKPLLS KGADGSKIIVTTRSQRVAEIMGTVNTAYNLSLLGQEDCLSLFYKCAFKEGQMELYPNLVGIGKEIVAKCKQVPLAVINMGTQLYGKTDETEWKSVRDSEK WEEEGDGILPALKISYQRLPTHLKRCLLYCSVFPKDYLFADLLLVQFWMAHGLILQSSNPNEKLEDVGLRYVRELISRCFFQDYEDRIVIAYFKMHDLMH DLASSLAQNEFSIISSQNHRFSKTTRHLSVIDSIFFFHRILPKFSNEFDHVRSILFADIIVGPTCKTDFEKCLSGFKHLRSLELMDDSEFKDFPERIGAL KHLRYLHFFWNTEMTRLPKSLFKLQNLQALVVGAKGLEELPKDVRYMINLRFLFLVTQQKRLPEGGIGCLKFLQTLYIFLCQNLETLCEDMHGLKCLRKL FIVGCDSLISLPRSIQCLTTLEEFCILDCEKLDLMTIEEDKEKKIQPLSPPLRIVIFDNLPETLTLPEQLLQGSAESLQTFIIKNSPNIREMPECISNLN KLQNLEITRCPRLSKRCRRGTGEDWPKIKHIRRIEVDDDDSDEETSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	0	1	Pt-RGA.54
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	1.41	0.9423
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	2.00	0.9229
AT1G16670			Protein kinase superfamily pro...		Potri.011G142100 [exp]	2.23	0.9158
AT1G27170			transmembrane receptors;ATP bi...		Potri.017G143566 [exp]	2.44	0.9254
AT1G30825		DIS2, ARPC2, AR...	DISTORTED TRICHOMES 2, ACTIN-R...		Potri.003G157700 [exp]	3.31	0.9013	Pt-ARPC2.1
AT5G20110			Dynein light chain type 1 fami...		Potri.015G067800 [exp]	3.46	0.9157
AT5G05190			Protein of unknown function (D...		Potri.019G061400 [exp]	4.00	0.9082
AT3G61670			Protein of unknown function (D...		Potri.003G137700 [exp]	6.48	0.8963
AT2G45910			U-box domain-containing protei...		Potri.014G084900 [exp]	6.70	0.9055
AT1G05805	bHLH	bHLH128	basic helix-loop-helix (bHLH) ...		Potri.002G231700 [exp]	6.92	0.8973

Compare expression of checked genes

Potri.018G017900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.