Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ARR12.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25180 364 / 2e-117 GARP ARR12 response regulator 12 (.1) AT4G31920 334 / 1e-106 GARP ARR10 response regulator 10 (.1) AT4G16110 269 / 1e-80 GARP ARR2 response regulator 2 (.1) AT3G16857 268 / 3e-80 GARP ARR1 response regulator 1 (.1.2) AT5G58080 267 / 3e-80 GARP ARR18 response regulator 18 (.1) AT2G01760 236 / 2e-71 GARP ARR14 response regulator 14 (.1) AT1G67710 224 / 2e-65 GARP ARR11 response regulator 11 (.1) AT5G49240 149 / 2e-40 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 136 / 6e-35 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT5G59570 96 / 2e-21 GARP BOA BROTHER OF LUX ARRHYTHMO, Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262100 [exp] 1094 / 0 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G111300 [exp] 454 / 5e-151 AT2G25180 348 / 3e-111 response regulator 12 (.1) Potri.006G188000 [exp] 440 / 7e-146 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.008G213500 [exp] 280 / 1e-84 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G001000 [exp] 278 / 7e-84 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G105600 [exp] 271 / 2e-81 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.008G135500 [exp] 268 / 4e-80 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G053100 [exp] 243 / 5e-72 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 218 / 3e-62 AT1G67710 383 / 5e-127 response regulator 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041020 [exp] 617 / 0 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10005340 [exp] 609 / 0 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10037719 [exp] 287 / 7e-87 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10016846 [exp] 286 / 2e-86 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10006446 [exp] 237 / 7e-71 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10011389 [exp] 236 / 7e-71 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10019058 [exp] 232 / 7e-68 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 228 / 3e-66 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10025044 [exp] 166 / 1e-44 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 119 / 7e-28 AT4G16110 169 / 4e-45 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G021300.7 pacid=42801225 polypeptide=Potri.018G021300.7.p locus=Potri.018G021300 ID=Potri.018G021300.7.v4.1 annot-version=v4.1 ATGACTGTAGAACAGGGGATTGGAGATAGCAATATAGATCAGTTTCCTATTGGTATGAGAGTTTTGGCTGTTGATGATGACCCAACTTGTCTTTTACTGT TAGAGACTCTACTCCGAAGATGCCAGTACAATGTTACTACGACGAGTCAGGCAATCACGGCATTGAGGATGTTGAGAGAAAACAAGAACAAGTTTGACCT GGTTATCAGTGATGTCCATATGCCAGACATGGATGGTTTTAAATTGCTGGAGCTCGTGGGGCTTGAGATGGACCTACCTGTCATCATGTTGTCAGCAAAC GGTGATCCAAAGCTTGTGATGAAGGGGATCACTCATGGAGCTTGTTATTATTTGCTCAAGCCTGTTCGAATTGAGGAGCTAAAGACCATCTGGCAACATG TGATTAGGAGAAAGAAAAGTGATAACAAAGACAGAAACAGCTCGGATAACCGAGACAAGCCTAATCAAGGAAGTAGTGAAGCAGTACCTGACCAGAAGCT TAATAAAAAAAGAAAAGACCAGAATGGAGACGAGGATGAGGATCATGATGAGGACGAGGACGAGCATGAAAATGAGGATCCAACAACCCAAAAGAAGCCC CGGGTTGTATGGTCAGTGGAGCTGCATCGCAAGTTTGTTGCAGCCGTTAATCAATTGGGCGTTGACAAGGCTGTTCCAAAGAAGATTCTTGATTTGATGA ATGTTGAAAAGCTTACTAGAGAAAATGTGGCAAGCCATCTCCAGAAATATAGGCATTACCTTAAAAGGATCAGCACCGTGGCAAACCAGCAAGCTAATAT GGTGGCAGCTCTGGGCAGTTCAGATGCATCATACCTGCAAATGAATTCTATGAGTGTACTGGGATTGCACAGCTTGGCTGGATCTGTGCAGTTTCACAGC ACACCCTTCAGATCTCTCCAATCTAGTGGAATGCTTGATAGGTTGAATTCTCCTGCTGTTCTGGGCATTCACGGTCTTCCTTCTCCTGGAGTGATTCAAT TAGGTCATGTACAGACTGCACCCCACACGGCTAATGGTCTAAGTCACTTCCAACCAGTTGGACACCGAGGAAATAATGGGAACATACTGCAAGGGATGCC AATGCCATTAGAACTTGATCAAATACAATCCAACAAAGGTGTGAACTACATTCCGGAACTTCCTACTCATCTTGATGACACAGCCAGTTTCCCTGTTTCC AGTGGTTCCACAGATATGAAAATAATTGCTGGAAGCTCAAACAGCCCTTTTGTTGGTGTTTCAAACAAACACCTGATGTTGGAAGGACATGGTCAAGGGC TCCAAGATGGCCAAAAATCTGGAAAGCAATCTTCTCTTTCAGCAGGGTCTTTAAATCCAGGATATTCTTCCCATTTTCCAGATCATGGTAGATGTAATGA CAACTGGTCCAACGCTGTTCCGTCAAATGGGGCCCAGTCAGATTCTTTTACGTTGAATGACTATTTTAAGCAATCTACTCTGCATCCTAGTGCCATCAGA GACCGCATGTCAACAATGGCCTTGCAAAGCAGGAATAATCCTTGTGATGTTTCTTCTGTCTCAACTCTTCCCATGCATTTACAGGACTCCAAAGCAGATC TACCATGCCGAGTGGGAGTGGCTACAGTGAGTAGTAATGCTGGACAGCTAATTAATAATGGCTCTCTAGGGTGGGATGACCGTAGGCAGGATGATCCTTA CCACTCAAATGGCCTATCTAACTCAATAAACTCAGCATTTCCTATTAATGGTAATGGGAGTCCCAATGGGTTCAATTTAGATCCAAATAACCTGTTTTTT CAGAGAACCACAAGCTTCATTTCAACTGGACCGTCAAATTTTGTTGATACCTCATTGATGAAGCATAATGAGGTTGAATGTTCAGCCATGGAAACATTAG TGAGGTCAAAAGATGGGTATTTGCTAGGCCAAGAGAAGCCACAGGACAGTTCTGTTTCGAATAATTTTGGCTCCTTGGAAGATTTGGTGAGCGTAATGAT CAATCAGCCAACCATTCTTGGTTAG
AA sequence Show only first row Show all	>Potri.018G021300.7 pacid=42801225 polypeptide=Potri.018G021300.7.p locus=Potri.018G021300 ID=Potri.018G021300.7.v4.1 annot-version=v4.1 MTVEQGIGDSNIDQFPIGMRVLAVDDDPTCLLLLETLLRRCQYNVTTTSQAITALRMLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSAN GDPKLVMKGITHGACYYLLKPVRIEELKTIWQHVIRRKKSDNKDRNSSDNRDKPNQGSSEAVPDQKLNKKRKDQNGDEDEDHDEDEDEHENEDPTTQKKP RVVWSVELHRKFVAAVNQLGVDKAVPKKILDLMNVEKLTRENVASHLQKYRHYLKRISTVANQQANMVAALGSSDASYLQMNSMSVLGLHSLAGSVQFHS TPFRSLQSSGMLDRLNSPAVLGIHGLPSPGVIQLGHVQTAPHTANGLSHFQPVGHRGNNGNILQGMPMPLELDQIQSNKGVNYIPELPTHLDDTASFPVS SGSTDMKIIAGSSNSPFVGVSNKHLMLEGHGQGLQDGQKSGKQSSLSAGSLNPGYSSHFPDHGRCNDNWSNAVPSNGAQSDSFTLNDYFKQSTLHPSAIR DRMSTMALQSRNNPCDVSSVSTLPMHLQDSKADLPCRVGVATVSSNAGQLINNGSLGWDDRRQDDPYHSNGLSNSINSAFPINGNGSPNGFNLDPNNLFF QRTTSFISTGPSNFVDTSLMKHNEVECSAMETLVRSKDGYLLGQEKPQDSSVSNNFGSLEDLVSVMINQPTILG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	0	1	ARR12.2
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Potri.009G022900 [exp]	3.46	0.8629
AT1G47480			alpha/beta-Hydrolases superfam...		Potri.009G104700 [exp]	3.74	0.8542
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.018G150700 [exp]	4.24	0.8594
AT5G20400			2-oxoglutarate (2OG) and Fe(II...		Potri.018G121700 [exp]	5.29	0.8750
AT3G11710		ATKRS-1	lysyl-tRNA synthetase 1 (.1)		Potri.018G090400 [exp]	5.65	0.8534
AT4G31340			myosin heavy chain-related (.1...		Potri.006G076700 [exp]	6.00	0.8473
AT4G23340			2-oxoglutarate (2OG) and Fe(II...		Potri.003G128100 [exp]	6.00	0.8574	2OGox5
AT3G14000		ATBRXL2, BRX-LI...	DZC (Disease resistance/zinc f...		Potri.003G063200 [exp]	6.32	0.8345
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	7.34	0.8352
AT2G05160	C3HZnF		CCCH-type zinc fingerfamily pr...		Potri.014G165500 [exp]	7.74	0.8369

Compare expression of checked genes

Potri.018G021300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.