Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) AT4G31600 113 / 2e-28 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT1G07290 69 / 6e-13 GONST2 golgi nucleotide sugar transporter 2 (.1) AT2G13650 67 / 2e-12 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G77610 62 / 2e-10 EamA-like transporter family protein (.1) AT2G28315 61 / 4e-10 Nucleotide/sugar transporter family protein (.1) AT1G21870 59 / 2e-09 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G06890 58 / 3e-09 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G76670 56 / 2e-08 Nucleotide-sugar transporter family protein (.1) AT1G21070 55 / 3e-08 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G255400 [exp] 639 / 0 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.018G127400 [exp] 478 / 2e-170 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) Potri.006G270700 [exp] 127 / 1e-33 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G009400 [exp] 121 / 2e-31 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.005G062900 [exp] 84 / 1e-17 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.007G106400 [exp] 77 / 1e-15 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G011100 [exp] 71 / 3e-13 AT2G28315 529 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.004G211900 [exp] 70 / 3e-13 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.005G177200 [exp] 64 / 3e-11 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038090 [exp] 424 / 7e-150 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10006645 [exp] 374 / 3e-129 AT4G32272 359 / 2e-123 Nucleotide/sugar transporter family protein (.1.2) Lus10020119 [exp] 115 / 3e-29 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10026922 [exp] 115 / 3e-29 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10024126 [exp] 86 / 3e-18 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005387 [exp] 66 / 1e-11 AT2G13650 394 / 5e-138 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10001205 [exp] 65 / 3e-11 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1) Lus10005865 [exp] 64 / 4e-11 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10021464 [exp] 62 / 1e-10 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1) Lus10042700 [exp] 62 / 2e-10 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.018G026600.2 pacid=42802229 polypeptide=Potri.018G026600.2.p locus=Potri.018G026600 ID=Potri.018G026600.2.v4.1 annot-version=v4.1 ATGATGACTTCAATGGCGGCGTCAAGTTCCTCTTCCAATCCAATCCTACCAGTCTTCGTATCTTCAATCAGCGAAGAGAGGCAAAGAGAGAAAGAGAGAT TGGTTAAAGGAGATGATAAGGTCTTCAGAGGATCTTCAATGACTAAGAGAGGAGCTAATGCCGCTATCTCTTACATGTCTTGTGCTGTGCTTTTGATATT GTTCAATAAAGCAGCTCTTTCTTCTTATAGCTTCCCTAGTGCAAATGTCATAACTTTATTTCAGATGATGTGCTCGTGCTCTTTTTTGTATGTATTGAGA CGCTGGAGGATTATCTCTTTCACTGATGGTGGATCCCTAATTACTTCTGATGTCAAAGCTACTTTTGTACCACTGGAGACATTGATTCACACCCTACCTC TTGCATTTACTTATTTGCTTTACATGCTAGTTACAATGGAGTCTGTCCGTGGGGTAAATGTTCCCATGTATACCACCCTAAGACGGACAACAGTGGTATT TACAATGATCATGGAGTACATTCTGGCAGGGCAGAGATATGCACCGCCAATTTTTGGAAGTGTTGGCTTGATAGTTCTTGGTGCATTTATTGCTGGAGCA CGGGACTTGTCATTTGACTTCTATGGCTATGCTGTTGTCTTCGCAGCCAATTTTACAACGGCTATATATCTGGCAACCATAAGCCGTATTGGGAAATCCA GTGGCCTTAATAGCTTTGGCCTTATGTGGTGCAATGGAATTATATGCGGACCAGTTTTGTTGTTTTGGACCTTTATTCGTGGTGATTTGCAGATGACCAT GAATTTCCCTTACTTGTTTTCCCCAGGTTTCTTGGCTGTATTGCTTTTTTCATGTATCCTGGCTTTCTTCTTGAATTACAGTATCTTCCTGAACACAACT CTCAATTCAGCACTGACACAGACCATTTGTGGTAACTTGAAGGATCTATTTACCATTGCACTTGGCTGGGCTATTTTTGGTGGGCTTCCTTTCGATATTT TCAATGTCATTGGGCAATCCCTTGGTTTTGTTGGCTCCGGTTTGTATGCGTACTATAAGCTCATAGGGAGGTAA
AA sequence Show only first row Show all	>Potri.018G026600.2 pacid=42802229 polypeptide=Potri.018G026600.2.p locus=Potri.018G026600 ID=Potri.018G026600.2.v4.1 annot-version=v4.1 MMTSMAASSSSSNPILPVFVSSISEERQREKERLVKGDDKVFRGSSMTKRGANAAISYMSCAVLLILFNKAALSSYSFPSANVITLFQMMCSCSFLYVLR RWRIISFTDGGSLITSDVKATFVPLETLIHTLPLAFTYLLYMLVTMESVRGVNVPMYTTLRRTTVVFTMIMEYILAGQRYAPPIFGSVGLIVLGAFIAGA RDLSFDFYGYAVVFAANFTTAIYLATISRIGKSSGLNSFGLMWCNGIICGPVLLFWTFIRGDLQMTMNFPYLFSPGFLAVLLFSCILAFFLNYSIFLNTT LNSALTQTICGNLKDLFTIALGWAIFGGLPFDIFNVIGQSLGFVGSGLYAYYKLIGR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32272			Nucleotide/sugar transporter f...		Potri.018G026600 [exp]	0	1
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Potri.004G167300 [exp]	1.00	0.6900	CHSL6
AT4G16760		ATACX1, ACX1	acyl-CoA oxidase 1 (.1.2)		Potri.003G079200 [exp]	10.19	0.6545	ACX1.1
AT1G29530			unknown protein		Potri.001G354600 [exp]	26.15	0.6499
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	31.36	0.5907
AT2G23140			RING/U-box superfamily protein...		Potri.007G051000 [exp]	32.93	0.5529
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.001G036500 [exp]	33.24	0.5679
AT1G74910			ADP-glucose pyrophosphorylase ...		Potri.015G070500 [exp]	36.00	0.6249
AT5G63110		RPD3B, CAT1, AX...	RNA-MEDIATED TRANSCRIPTIONAL S...		Potri.015G082500 [exp]	39.79	0.5381
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.001G199100 [exp]	44.19	0.5637
AT5G10780			unknown protein		Potri.018G016800 [exp]	47.96	0.5420

Compare expression of checked genes

Potri.018G026600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.