Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32390 568 / 0 Nucleotide-sugar transporter family protein (.1) AT5G25400 561 / 0 Nucleotide-sugar transporter family protein (.1) AT2G25520 555 / 0 Drug/metabolite transporter superfamily protein (.1) AT5G11230 540 / 0 Nucleotide-sugar transporter family protein (.1) AT3G17430 263 / 1e-85 Nucleotide-sugar transporter family protein (.1) AT1G48230 248 / 9e-80 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G53660 241 / 9e-78 nodulin MtN21 /EamA-like transporter family protein (.1) AT3G14410 235 / 5e-75 Nucleotide/sugar transporter family protein (.1) AT5G04160 99 / 1e-23 Nucleotide-sugar transporter family protein (.1) AT3G10290 99 / 3e-23 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G252500 [exp] 603 / 0 AT4G32390 537 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G001700 [exp] 266 / 7e-87 AT3G17430 589 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G214300 [exp] 265 / 4e-86 AT3G17430 569 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G394500 [exp] 248 / 3e-80 AT3G14410 496 / 5e-178 Nucleotide/sugar transporter family protein (.1) Potri.016G043200 [exp] 100 / 5e-24 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 97 / 6e-23 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 97 / 9e-23 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.003G118000 [exp] 96 / 3e-22 AT1G12500 503 / 4e-180 Nucleotide-sugar transporter family protein (.1) Potri.001G114100 [exp] 93 / 5e-21 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002904 [exp] 584 / 0 AT4G32390 632 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10002023 [exp] 583 / 0 AT4G32390 631 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018339 [exp] 267 / 5e-87 AT3G17430 615 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10017115 [exp] 254 / 7e-82 AT3G17430 593 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016923 [exp] 221 / 2e-69 AT3G14410 496 / 1e-177 Nucleotide/sugar transporter family protein (.1) Lus10028255 [exp] 97 / 1e-22 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 96 / 3e-22 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 96 / 3e-22 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 96 / 5e-22 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 94 / 2e-21 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.018G028900.1 pacid=42800692 polypeptide=Potri.018G028900.1.p locus=Potri.018G028900 ID=Potri.018G028900.1.v4.1 annot-version=v4.1 ATGGGCAAGGGTGGATCCCTGAGTGACAGTGTTCTGAAAAAGATCTTGCTTTCCTACACCTATGTAGCCATCTGGATCTTCCTCTCCTTCACTGTTATTG TTTACAACAAATACATCCTTGACAAAAAGATGTATAATTGGCCATTCCCAGTTTCTCTAACCATGATCCACATGTCTTTCTGTGCCACTCTTGCTATCCT TCTCATTAAAGTTTTCAAATTTGTTGAACCTGTCTCTATGTCAAGAGATGTTTATCTCAAATCTGTTGTTCCCATTGGTGCTTTATATTCTCTCAGTCTT TGGCTTTCTAACTCTGCTTATATTTACTTATCCGTTTCTTTCATTCAGATGTTAAAAGCCCTGATGCCTGTTGCTGTTTATTCTATTGGGGTTTTGCTCA AAAAAGAGAACTTTAAGAGTAATACTATGGCTAATATGTTGTCAATCTCTTTTGGGGTTGGGATTGCTGCTTATGGTGAGGCTAGATTTGATACTTGGGG GGTTATTCTTCAACTTGGTGCTGTAGCTTTTGAGGCTACAAGATTGGTAATGATTCAAATCTTGCTTACATCTAAAGGAATCACGTTGAATCCAATTACT TCTCTTTACTATGTGGCGCCTTGTTGTTTGGTTTTCTTGTTTATCCCATGGATTTTTGTGGAATATCCTGTTTTGAAGGAGACTTCAAGTTTTCATTTTG ATTTTGTCATCTTTGGGACCAATTCTGTGTGTGCTTTTGCCTTGAATCTCGCCGTGTTCTTGCTTGTGGGAAAGACTTCGGCTTTGACCATGAATGTGGC TGGTGTGGTTAAGGATTGGTTGTTGATCGCCTTCTCTTGGTCCGTTATTAAGGATACCGTGACCCCCATCAATTTGTTTGGCTACGGGCTTGCATTCTTG GGTGTCGCATACTACAATCACGCTAAGTTGCAGGCTATGAAGGCAAAAGATGCACAGAAGAAGGCTCAGGAGGCTGATGAGGAGGCTGGAAGGTTGTTGG AGGAGAGGGAAGTTGAGGGAAATGTGAAGAGAATTGAATCGGAAAACTAA
AA sequence Show only first row Show all	>Potri.018G028900.1 pacid=42800692 polypeptide=Potri.018G028900.1.p locus=Potri.018G028900 ID=Potri.018G028900.1.v4.1 annot-version=v4.1 MGKGGSLSDSVLKKILLSYTYVAIWIFLSFTVIVYNKYILDKKMYNWPFPVSLTMIHMSFCATLAILLIKVFKFVEPVSMSRDVYLKSVVPIGALYSLSL WLSNSAYIYLSVSFIQMLKALMPVAVYSIGVLLKKENFKSNTMANMLSISFGVGIAAYGEARFDTWGVILQLGAVAFEATRLVMIQILLTSKGITLNPIT SLYYVAPCCLVFLFIPWIFVEYPVLKETSSFHFDFVIFGTNSVCAFALNLAVFLLVGKTSALTMNVAGVVKDWLLIAFSWSVIKDTVTPINLFGYGLAFL GVAYYNHAKLQAMKAKDAQKKAQEADEEAGRLLEEREVEGNVKRIESEN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32390			Nucleotide-sugar transporter f...		Potri.018G028900 [exp]	0	1
AT2G37410		ATTIM17-2	TRANSLOCASE OF THE INNER MEMBR...		Potri.008G176500 [exp]	3.46	0.7593	TIM17.2
AT1G01170			Protein of unknown function (D...		Potri.016G055200 [exp]	16.67	0.7841
AT4G09720		AtRABG3a	RAB GTPase homolog G3A (.1.2.3...		Potri.002G062400 [exp]	46.50	0.7355	Pt-RAB7.2
AT2G47470		ATPDI11, ATPDIL...	UNFERTILIZED EMBRYO SAC 5, MAT...		Potri.014G122800 [exp]	62.78	0.7363
AT5G23250			Succinyl-CoA ligase, alpha sub...		Potri.012G036200 [exp]	65.72	0.7392
AT3G02360			6-phosphogluconate dehydrogena...		Potri.004G108920 [exp]	95.32	0.6674
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.015G023300 [exp]	106.95	0.6641	Pt-UBC.4
AT5G42000			ORMDL family protein (.1.2)		Potri.003G144600 [exp]	115.41	0.6914
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.001G067900 [exp]	132.78	0.6922
AT4G36750			Quinone reductase family prote...		Potri.007G029600 [exp]	170.30	0.6555

Compare expression of checked genes

Potri.018G028900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.