Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G53750 803 / 0 RPT1A regulatory particle triple-A 1A (.1) AT1G53780 689 / 0 peptidyl-prolyl cis-trans isomerases;hydrolases;nucleoside-triphosphatases;ATP binding;nucleotide binding;ATPases (.1.2.3) AT5G19990 351 / 3e-118 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G20000 350 / 6e-118 RPT6A AAA-type ATPase family protein (.1) AT1G45000 328 / 1e-109 AAA-type ATPase family protein (.1.2) AT5G43010 328 / 2e-109 RPT4A regulatory particle triple-A ATPase 4A (.1) AT4G29040 315 / 8e-104 RPT2A regulatory particle AAA-ATPase 2A (.1) AT2G20140 315 / 1e-103 RPT2b regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) AT3G05530 312 / 7e-103 ATS6A.2, RPT5A regulatory particle triple-A ATPase 5A (.1) AT5G58290 310 / 3e-102 RPT3 regulatory particle triple-A ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G216600 [exp] 840 / 0 AT1G53750 804 / 0.0 regulatory particle triple-A 1A (.1) Potri.001G161700 [exp] 812 / 0 AT1G53750 809 / 0.0 regulatory particle triple-A 1A (.1) Potri.010G098300 [exp] 350 / 8e-118 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.008G144100 [exp] 350 / 2e-117 AT5G19990 741 / 0.0 regulatory particle triple-A ATPase 6A (.1) Potri.002G031400 [exp] 332 / 8e-111 AT1G45000 745 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G231700 [exp] 329 / 6e-110 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Potri.004G158600 [exp] 329 / 8e-110 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Potri.009G120500 [exp] 328 / 1e-109 AT1G45000 744 / 0.0 AAA-type ATPase family protein (.1.2) Potri.005G025100 [exp] 313 / 2e-103 AT3G05530 795 / 0.0 regulatory particle triple-A ATPase 5A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031243 [exp] 814 / 0 AT1G53750 841 / 0.0 regulatory particle triple-A 1A (.1) Lus10031815 [exp] 802 / 0 AT1G53750 828 / 0.0 regulatory particle triple-A 1A (.1) Lus10017762 [exp] 353 / 6e-119 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10017972 [exp] 328 / 2e-109 AT1G45000 756 / 0.0 AAA-type ATPase family protein (.1.2) Lus10017475 [exp] 327 / 6e-109 AT1G45000 759 / 0.0 AAA-type ATPase family protein (.1.2) Lus10028807 [exp] 327 / 9e-109 AT1G45000 748 / 0.0 AAA-type ATPase family protein (.1.2) Lus10041964 [exp] 321 / 1e-106 AT1G45000 752 / 0.0 AAA-type ATPase family protein (.1.2) Lus10015524 [exp] 312 / 4e-104 AT2G20140 659 / 0.0 regulatory particle AAA-ATPase 2b, AAA-type ATPase family protein (.1) Lus10029887 [exp] 313 / 2e-103 AT3G05530 837 / 0.0 regulatory particle triple-A ATPase 5A (.1) Lus10031492 [exp] 313 / 4e-103 AT3G05530 820 / 0.0 regulatory particle triple-A ATPase 5A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Potri.018G056600.1 pacid=42801366 polypeptide=Potri.018G056600.1.p locus=Potri.018G056600 ID=Potri.018G056600.1.v4.1 annot-version=v4.1 ATGGCTCCGGCAGCGGTTGACGACGATGAGATATTGAAGGACGAGAAGAATCCACCTCCTCTCGACGAAGACGACATCGCTCTCCTCAAAACTTATGGTT TGGGTCCGTACTCGAACAGTATTAAGAAAGAAGAGAAGGAAATCAAAGAATTAGCTAAGAAGATTAATGATCTTCGGGGCATTAAAGAATCTGACACCGG TTTAGCAGCACCCAGCCAGTGGGACCTTGTGTCTGATAAGCAGATGATGCAAGAAGAACAACCACTACAGGTTGCAAGGTGCACAAAGATTATTAGTCCA AATACCGAGGATGCAAAGTATGTCATAAATGTCAAGCAAATTGCTAAGTTTGTGGTTGGGCTTGGTGACAAAGTTTCCCCTACTGATATAGAAGAAGGCA TGCGAGTGGGTGTTGATCGCAACAAGTATCAGATTCAGATTCCATTGCCTCCAAAGATTGATCCAAGTGTTACAATGATGACTGTAGAAGAAAAGCCTGA TGTTACATATAATGATGTTGGTGGATGTAAGGAGCAAATAGAAAAGATGCGAGAAGTTGTTGAGCTTCCCATGCTTCATCCAGAGAAATTTGTAAAGCTT GGAATTGATCCTCCTAAGGGTGTTTTGTGCTATGGTCCTCCTGGAACGGTTAAAACTCTCTTGGCAAGAGCTGTAGCTAACAGAACTGATGCATGCTTCA TTCGTGTTATTGGGAGTGAACTTGTCCAAAAATATGTTGGTGAGGGGGCACGCATGGTTCGGGAGCTTTTTCAGATGGCACGGTCAAAAAAAGCTTGCAT TGTCTTTTTTGATGAAGTTGATGCAATAGGTGGTGCACGTTTTGATGATGGTGTCGGTGGAGATAATGAGGTCCAACGTACCATGCTTGAAATTGTAAAT CAACTTGATGGTTTTGATGCTCGAGGAAATATCAAAGTCTTGATGGCAACAAACAGACCTGATACACTGGACCCAGCTCTGTTACGTCCAGGAAGATTAG ATCGTAAGGTTGAGTTTGGGCTGCCTGATTTGGAGAGCAGGACTCAGATTTTCAAGATCCACACACGAACTATGAATTGTGAAAGAGATATTCGTTTTGA GCTTCTTGCACGCCTTTGTCCAAATTCAACCGGAGCTGACATTAGGAGTGTCTGCACTGAGGCTGGGATGTATGCCATTAGAGCACGCAGGAAGACAGTG ACTGAGAAAGACTTCCTTGATGCAGTAAACAAGGTCATCAAGGGTTATCAGAAGTTTAGTGCAACGCCAAAGTACATGGTCTACAACTGA
AA sequence Show only first row Show all	>Potri.018G056600.1 pacid=42801366 polypeptide=Potri.018G056600.1.p locus=Potri.018G056600 ID=Potri.018G056600.1.v4.1 annot-version=v4.1 MAPAAVDDDEILKDEKNPPPLDEDDIALLKTYGLGPYSNSIKKEEKEIKELAKKINDLRGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIISP NTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKL GIDPPKGVLCYGPPGTVKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVN QLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTV TEKDFLDAVNKVIKGYQKFSATPKYMVYN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G53750		RPT1A	regulatory particle triple-A 1...		Potri.018G056600 [exp]	0	1
AT4G17100			unknown protein		Potri.003G085600 [exp]	4.35	0.8914
AT2G38910		CPK20	calcium-dependent protein kina...		Potri.006G199400 [exp]	5.00	0.9102	CPK20.1
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.015G063600 [exp]	7.34	0.9163
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.004G157800 [exp]	7.48	0.9129
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.013G076501 [exp]	9.64	0.8786
AT2G15790		CYP40, SQN	SQUINT, CYCLOPHILIN 40, peptid...		Potri.007G040100 [exp]	10.39	0.9077
AT4G16850			unknown protein		Potri.018G097900 [exp]	12.12	0.9083
AT2G21870		MGP1	MALE GAMETOPHYTE DEFECTIVE 1, ...		Potri.005G085500 [exp]	14.69	0.9083
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.003G023900 [exp]	16.15	0.8797	Pt-KUP7.2
AT3G01790			Ribosomal protein L13 family p...		Potri.001G334000 [exp]	17.32	0.8905

Compare expression of checked genes

Potri.018G056600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.