Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19980 483 / 1e-172 GONST4 golgi nucleotide sugar transporter 4 (.1) AT1G76340 311 / 1e-104 GONST3 golgi nucleotide sugar transporter 3 (.1) AT4G31600 70 / 4e-13 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT1G07290 70 / 5e-13 GONST2 golgi nucleotide sugar transporter 2 (.1) AT4G32272 45 / 3e-05 Nucleotide/sugar transporter family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G057600 [exp] 312 / 8e-105 AT1G76340 557 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.008G177700 [exp] 305 / 3e-102 AT1G76340 540 / 0.0 golgi nucleotide sugar transporter 3 (.1) Potri.006G270700 [exp] 74 / 1e-14 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.007G106400 [exp] 70 / 3e-13 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.018G009400 [exp] 67 / 2e-12 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.009G044000 [exp] 58 / 3e-09 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.018G127400 [exp] 48 / 5e-06 AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017759 [exp] 507 / 0 AT5G19980 495 / 2e-177 golgi nucleotide sugar transporter 4 (.1) Lus10033058 [exp] 507 / 0 AT5G19980 492 / 2e-176 golgi nucleotide sugar transporter 4 (.1) Lus10018311 [exp] 503 / 3e-180 AT5G19980 478 / 8e-171 golgi nucleotide sugar transporter 4 (.1) Lus10017141 [exp] 500 / 2e-179 AT5G19980 489 / 4e-175 golgi nucleotide sugar transporter 4 (.1) Lus10034672 [exp] 320 / 6e-108 AT1G76340 489 / 3e-174 golgi nucleotide sugar transporter 3 (.1) Lus10034674 [exp] 315 / 9e-107 AT1G76340 473 / 2e-168 golgi nucleotide sugar transporter 3 (.1) Lus10037000 [exp] 309 / 1e-103 AT1G76340 549 / 0.0 golgi nucleotide sugar transporter 3 (.1) Lus10015806 [exp] 263 / 3e-86 AT1G76340 434 / 2e-153 golgi nucleotide sugar transporter 3 (.1) Lus10005865 [exp] 73 / 5e-14 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10024126 [exp] 66 / 8e-12 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.018G071700.1 pacid=42800888 polypeptide=Potri.018G071700.1.p locus=Potri.018G071700 ID=Potri.018G071700.1.v4.1 annot-version=v4.1 ATGTCTTCGATTCGAGTGGATTCCAGTAAGCAATTGGCGACGAGTAGTCTTGTGGTGGGTTATGCACTTTGTTCAAGTTTGCTTGCTGTAATTAACAAGT TTGCAATTACCAAATTTAACTACCCTGGCCTTTTAACTGCATTGCAGTACCTAACCTCTGCATTGGGTGTTTGGGTTTTAGGCAAATTGGGGCTTTTATA TCATGATTCCTTCTCTTATGAAACTGCCAAGAAGTTCTTACCTGCTGCTCTTGTTTTCTATCTGGCGATCTTTACGAATACCAATCTTTTGCGTCATGCC AATGTCGACACTTTTATTGTGTTCAGATCCTTAACACCCCTTTTGGTGGCTATAGCTGACACTCTGTTTAGAAAACAACCCATCCCATCCAAGCTCACCT TTGTTTCCTTGTTTGTTATTTTGGGTGGTGCTGTTGGCTATGTGGCCACTGATTCTGCTTTTACTTTGACTGCTTACTCTTGGGCACTTGCATATTTAGT CACTATTACTTCAGAGATGGTTTATATCAAACACATTGTCTCCAATATTGGACTCAACACCTGGGGTCTTGTGTTCTACAATAATTTGTTGTCATTGATG ATGGCGCCGCTCTTCTGGATTCTTACGGGGGAGTATAGTGAGGTGTTTGCTTCCTGGGGATCAAAAACTGGGAATTGGTTTGAATTCGATGCATTTTTTG CTGTGTCTTTGTCGTGCATTTTTGGTTTTCTTATTAGTTTCTTCGGATTTGCTGCAAGGAAGGCAATATCGGCCACCGCGTTTACTGTCACCGGGGTTGT CAATAAGTTTCTTACTGTTGTCATCAATGTGTTTATTTGGGATAAACATGCTAGCCCGGTTGGTTTATTTTGTCTTGTATTCACGCTTGCTGGAGGTGTT CTTTATCAGCAGTCAGTTACTGGAGCTGGCAGTGCTCCATTGCAGCGTGAGACTGTTTCTAATCAGACAGGTGATGAAAATGATGGCGATGAAGAGAGTC AACTGATCAAAAAGACCGATGGTGATGAAGAGAATTAG
AA sequence Show only first row Show all	>Potri.018G071700.1 pacid=42800888 polypeptide=Potri.018G071700.1.p locus=Potri.018G071700 ID=Potri.018G071700.1.v4.1 annot-version=v4.1 MSSIRVDSSKQLATSSLVVGYALCSSLLAVINKFAITKFNYPGLLTALQYLTSALGVWVLGKLGLLYHDSFSYETAKKFLPAALVFYLAIFTNTNLLRHA NVDTFIVFRSLTPLLVAIADTLFRKQPIPSKLTFVSLFVILGGAVGYVATDSAFTLTAYSWALAYLVTITSEMVYIKHIVSNIGLNTWGLVFYNNLLSLM MAPLFWILTGEYSEVFASWGSKTGNWFEFDAFFAVSLSCIFGFLISFFGFAARKAISATAFTVTGVVNKFLTVVINVFIWDKHASPVGLFCLVFTLAGGV LYQQSVTGAGSAPLQRETVSNQTGDENDGDEESQLIKKTDGDEEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19980		GONST4	golgi nucleotide sugar transpo...		Potri.018G071700 [exp]	0	1
AT4G16450			unknown protein		Potri.006G016300 [exp]	7.61	0.9220
AT4G11150		TUFF, EMB2448, ...	embryo defective 2448, vacuola...		Potri.013G051500 [exp]	10.00	0.9162
AT1G01050		ATPPA1	pyrophosphorylase 1 (.1)		Potri.014G107100 [exp]	10.09	0.8907
AT2G42310			unknown protein		Potri.016G051400 [exp]	10.39	0.9112
AT4G12650			Endomembrane protein 70 protei...		Potri.002G217300 [exp]	13.41	0.9187
AT4G28088			Low temperature and salt respo...		Potri.006G182500 [exp]	14.00	0.9111
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.017G086900 [exp]	16.12	0.8951
AT1G60970			SNARE-like superfamily protein...		Potri.003G043200 [exp]	20.00	0.9182
AT1G01170			Protein of unknown function (D...		Potri.016G055200 [exp]	25.92	0.8716
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.012G095300 [exp]	26.15	0.9037

Compare expression of checked genes

Potri.018G071700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.