Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03500 299 / 4e-97 GARP Homeodomain-like superfamily protein (.1) AT1G68670 162 / 1e-45 GARP myb-like transcription factor family protein (.1) AT1G25550 161 / 2e-45 GARP myb-like transcription factor family protein (.1) AT4G37180 136 / 7e-36 GARP Homeodomain-like superfamily protein (.1.2) AT1G13300 120 / 2e-30 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT3G25790 114 / 4e-28 GARP myb-like transcription factor family protein (.1) AT1G49560 103 / 2e-24 GARP Homeodomain-like superfamily protein (.1) AT4G28610 72 / 2e-13 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G05090 70 / 2e-13 GARP Homeodomain-like superfamily protein (.1) AT3G10760 71 / 4e-13 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155200 [exp] 570 / 0 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.009G106600 [exp] 185 / 1e-53 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 173 / 4e-49 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.008G117500 [exp] 169 / 8e-48 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.007G039400 [exp] 157 / 1e-43 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.005G134600 [exp] 150 / 3e-41 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.010G128900 [exp] 130 / 2e-33 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.010G001000 [exp] 70 / 1e-12 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.013G060200 [exp] 69 / 1e-12 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043304 [exp] 316 / 5e-103 AT2G03500 341 / 3e-113 Homeodomain-like superfamily protein (.1) Lus10019452 [exp] 216 / 3e-63 AT2G03500 231 / 3e-69 Homeodomain-like superfamily protein (.1) Lus10021699 [exp] 166 / 5e-47 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10035043 [exp] 164 / 2e-46 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10012056 [exp] 154 / 2e-42 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10020995 [exp] 149 / 4e-40 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10023857 [exp] 135 / 2e-35 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10034280 [exp] 128 / 6e-33 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10041485 [exp] 126 / 8e-32 AT1G25550 288 / 2e-94 myb-like transcription factor family protein (.1) Lus10009334 [exp] 100 / 3e-23 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G074200.1 pacid=42802185 polypeptide=Potri.018G074200.1.p locus=Potri.018G074200 ID=Potri.018G074200.1.v4.1 annot-version=v4.1 ATGGCATCTCCATCAGAACTCAGCCTGGATTGCAAGCCCCACAGCTATTCTATGCTATTGAAATCTTTTGGAGAACAGAATGACCAGACCCAAAAGCTTG AAGAGTTTCTCTCTCTCCTTGAAGAAGAAAGGCTAAAGATAGATGTTTTCAAACGCGAGCTACCCCTTTGCATGCAACTTCTAACCAATGCTGTGGAGAC GTCGAGGCAGCAACTACAAGCCTATAGAGCAAATCAAGTGCCCACACCAGTTCTTGAAGAATTCATTCCTCTCAAAACACCAACATCTGAAGCCCTAGAG AAGACAACAAACATTTCTGATAAGGCAAACTGGATGACAACAGCACAACTTTGGAGCCAAGACAGCAATGAATCCAAACCACAGACCACATTGACATCCC CAAAACAAACTGATATAGGATTCAATGTTAGTTCCAAGCTGGCCTTAGATACCAAACAAAGAAATGGAGGAGCTTTCCTTCCATTCTCAAAAGAAAGAAA CTTGTGTCCAAGCCCAACCCTAGCTCTTTCTTCAACTGATAAACACATGGAATTCGATCATAAAAAATGCTCAGAAGCTGAGAATGGATTTTCTTGTCCA AAAAGAGAAAGTTCTGGTAATAAGATTGGCAATGGTGGGGTTGTGATTGAGCAAGCAAAAGGAGCTGTTAATAATTCTTCATCTGATGGCCAAGCAACAA ACACTGCAACTGCTTCTACTACATCTACCACCCAGACTCATAGAAAAGCAAGGAGATGTTGGTCGCCTGACTTACACCGCAGATTTGTCAATGCTCTTCA TATGCTTGGTGGTTCTCAAGTGGCCACCCCAAAACAAATCAGGGAACTCATGAAGGTTGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTGCAGAAA TATAGGCTTCATACAAGGCGACCCAGTCCAAGCCCACAAGCAGCGGGAGCCCCACCACCACAACTTGTGGTCCTGGGTGGCATATGGGTCCCCCCTGAGT ACGCCACGGCAGCGGCAGCGGCTCATAGTGGGGGGCCCACCCTCTATGGCGCCCACCAAGCTTCCCATGCACCGCCACCTCACTTCTGTGCTGCACCACC TGTGTCCCAAGACTTCTACACTGCAGCTGCGACACCTCCACCACCACTTCACCACCACACCCTCTACCACCAACTCCACTTGTACAAGCCCACTGCACAG GCCCATAGCTCCCCGGAGTCGGATGTCAGGGGCACTAGGGACAGGTCTGAGAGCATTGAAGATGGCAAGTCAGAAAGCAGCAGCTGGAAGGGCGAGAGTG GTGAAAATGATGGTGGAGAGAGAAGAGGGCTGGCGGCTCTGAGAGAAGATTGTGAAGAGAGCAATGGGAGTGAGATCACTCTCAAGTTTTAG
AA sequence Show only first row Show all	>Potri.018G074200.1 pacid=42802185 polypeptide=Potri.018G074200.1.p locus=Potri.018G074200 ID=Potri.018G074200.1.v4.1 annot-version=v4.1 MASPSELSLDCKPHSYSMLLKSFGEQNDQTQKLEEFLSLLEEERLKIDVFKRELPLCMQLLTNAVETSRQQLQAYRANQVPTPVLEEFIPLKTPTSEALE KTTNISDKANWMTTAQLWSQDSNESKPQTTLTSPKQTDIGFNVSSKLALDTKQRNGGAFLPFSKERNLCPSPTLALSSTDKHMEFDHKKCSEAENGFSCP KRESSGNKIGNGGVVIEQAKGAVNNSSSDGQATNTATASTTSTTQTHRKARRCWSPDLHRRFVNALHMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQK YRLHTRRPSPSPQAAGAPPPQLVVLGGIWVPPEYATAAAAAHSGGPTLYGAHQASHAPPPHFCAAPPVSQDFYTAAATPPPPLHHHTLYHQLHLYKPTAQ AHSSPESDVRGTRDRSESIEDGKSESSSWKGESGENDGGERRGLAALREDCEESNGSEITLKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03500	GARP		Homeodomain-like superfamily p...		Potri.018G074200 [exp]	0	1
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.005G245000 [exp]	1.73	0.9079
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.010G174100 [exp]	2.00	0.9179
AT4G10790			UBX domain-containing protein ...		Potri.015G080200 [exp]	2.44	0.9092
AT2G39840		TOPP4	type one serine/threonine prot...		Potri.008G166300 [exp]	3.46	0.9030
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.017G052900 [exp]	3.46	0.8839
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.014G060200 [exp]	4.24	0.8794
AT1G19715			Mannose-binding lectin superfa...		Potri.002G030400 [exp]	5.47	0.8791
AT1G65780			P-loop containing nucleoside t...		Potri.017G140601 [exp]	5.91	0.8924
AT1G65810			P-loop containing nucleoside t...		Potri.008G143000 [exp]	7.07	0.8365
AT4G14840			unknown protein		Potri.008G153800 [exp]	7.74	0.8322

Compare expression of checked genes

Potri.018G074200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.