Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24530 754 / 0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT4G19150 64 / 2e-11 Ankyrin repeat family protein (.1.2) AT5G20350 63 / 2e-10 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G28840 57 / 1e-08 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT2G14255 57 / 1e-08 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G03430 56 / 2e-08 Ankyrin repeat family protein (.1) AT4G27780 54 / 1e-07 ACBP2 acyl-CoA binding protein 2 (.1) AT3G02850 52 / 1e-06 SKOR STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) AT5G02620 50 / 2e-06 ATANK1, ANK1 ankyrin-like1 (.1) AT1G14480 50 / 3e-06 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158600 [exp] 924 / 0 AT3G24530 741 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.003G103400 [exp] 74 / 2e-14 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 72 / 6e-14 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.010G161300 [exp] 57 / 4e-09 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.010G185200 [exp] 55 / 6e-08 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.005G105800 [exp] 54 / 1e-07 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.002G213200 [exp] 53 / 3e-07 AT2G03430 96 / 2e-22 Ankyrin repeat family protein (.1) Potri.001G295200 [exp] 52 / 3e-07 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.006G061800 [exp] 53 / 4e-07 AT5G20350 959 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023642 [exp] 816 / 0 AT3G24530 773 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10043218 [exp] 802 / 0 AT3G24530 743 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10034913 [exp] 791 / 0 AT3G24530 748 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011096 [exp] 490 / 4e-174 AT3G24530 471 / 5e-167 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011097 [exp] 285 / 7e-95 AT3G24530 252 / 2e-82 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10005293 [exp] 137 / 1e-38 AT3G24530 146 / 5e-43 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10001414 [exp] 72 / 6e-14 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10001048 [exp] 69 / 1e-12 AT4G19150 230 / 6e-76 Ankyrin repeat family protein (.1.2) Lus10016561 [exp] 56 / 6e-08 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10008037 [exp] 54 / 2e-07 AT5G20350 905 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.018G081000.1 pacid=42801131 polypeptide=Potri.018G081000.1.p locus=Potri.018G081000 ID=Potri.018G081000.1.v4.1 annot-version=v4.1 ATGCAGCGGGATCGTCAGGATCATGGATCGAGGTCTTCCAAGCCCGCTACCATTCATAGCTATGCCCAATCCGGGGATCTTCTTGGGTTCCAAAGGTTAC TCAGAGGAGACCCTTCTCTCCTCAATGAAAGAAACCCTGTTATGGCACAGACTCCTCTTCATGTATCTGCTGGTTACAACAGGGCTGATATAATTAAATT TCTTCTTGATTGGCAAGGAGCAGAGAAGGTTGAATTGGAACCTAGGAACATGTATGGAGAAACTCCATTACACATGGCAGCAAAGAATGGGTGCACTGAA GCTGCACGATTACTTCTTGCTCATGGTGCTTTTGTTGAAGCCAAAGCGAATAATGGAATGACACCATTACACCTTGCAGTTTGGTACTCAATTAGAGCGG AAGACCACTCAACTGTCAAGACTTTGCTGGAGTATAATGCTGACTGCAGTGCAGAGGACAACGAGGGCATGACTCCTCTGAATCACCTCTCACCAGGTCC AGGAAGTGAGGAGGTGCGTAAACTACTGCACTGGCATCTTGAAGAGCAGAGAAAGAGAAAAGCACTTGAAGCATGCTCTAAAACAAAAGCTAAGATGGAT GAACTTGAAGATGCTTTAACAAATGTAGTGGGGTTGCATGAACTCAAGGTGCAATTGAGAAAATGGGCAAAGGGGATGCTTTTGGATGAGAGGCGCAGGG CCCTTGGTATGAAAGTTGGTATGAGAAGACCGCCTCATATGGCTTTCTTGGGAAGCCCTGGAACAGGTAAGACCATGGTAGCTCGAATACTTGGAAGACT ACTCCATATGGTGGGAGTTCTACCTACTGACAAGGTAACGGAAGTACAACGAACAGATTTGGTTGGCGAATTTGTTGGTCACACTGGTCCCAAGACTAGA CGAAAGATTGCAGAAGCAGAGGGAGGAATTCTTTTTGTGGATGAAGCATATCGCCTTATACCATCGCAGAAAGAAGATGATAAGGACTATGGGATTGAAG CGTTGGAAGAAATCATGTCTGTTATGGACAGCGGAAAAGTCGTAGTCATATTTGCTGGCTATAGCGAACCAATGAAGCGTGTGATATCTTCTAACGAGGG TTTCTGTAGAAGGGTTACCAAGTTTTTCCATTTTAATGACTTTAGCTCTAAAGATTTAGCAAATATTTGCCACATCAACATGAATACTCAGGACGAAGGC AGTCCGCTGTATGGTTTTAAATTACATCCTTCATGCTGTGTAGATGCCATTGCTGCCTTGATAGAGAGAGAAACAACAGAAAAACAGCGTAGGGAAATGA ATGGAGGCTTGGTAAATACCATGCTAGCTAATGCTAGAGAGAATTTGGATCTCAGGCTTGATTTCAACTGTTTAGATACTGATGAACTGCAGACCATCAC CTTAGAGGATTTGGAAGCAGGTCTTCAACTGTTATAA
AA sequence Show only first row Show all	>Potri.018G081000.1 pacid=42801131 polypeptide=Potri.018G081000.1.p locus=Potri.018G081000 ID=Potri.018G081000.1.v4.1 annot-version=v4.1 MQRDRQDHGSRSSKPATIHSYAQSGDLLGFQRLLRGDPSLLNERNPVMAQTPLHVSAGYNRADIIKFLLDWQGAEKVELEPRNMYGETPLHMAAKNGCTE AARLLLAHGAFVEAKANNGMTPLHLAVWYSIRAEDHSTVKTLLEYNADCSAEDNEGMTPLNHLSPGPGSEEVRKLLHWHLEEQRKRKALEACSKTKAKMD ELEDALTNVVGLHELKVQLRKWAKGMLLDERRRALGMKVGMRRPPHMAFLGSPGTGKTMVARILGRLLHMVGVLPTDKVTEVQRTDLVGEFVGHTGPKTR RKIAEAEGGILFVDEAYRLIPSQKEDDKDYGIEALEEIMSVMDSGKVVVIFAGYSEPMKRVISSNEGFCRRVTKFFHFNDFSSKDLANICHINMNTQDEG SPLYGFKLHPSCCVDAIAALIERETTEKQRREMNGGLVNTMLANARENLDLRLDFNCLDTDELQTITLEDLEAGLQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24530			AAA-type ATPase family protein...		Potri.018G081000 [exp]	0	1
AT3G27325			hydrolases, acting on ester bo...		Potri.001G338000 [exp]	3.74	0.9301
AT5G11800		ATKEA6, KEA6	K+ efflux antiporter 6, ARABID...		Potri.006G230400 [exp]	3.87	0.9196	Pt-ATKEA4.3
AT1G50120			unknown protein		Potri.007G071000 [exp]	4.58	0.9330
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.018G055001 [exp]	5.91	0.9004
AT3G60260			ELMO/CED-12 family protein (.1...		Potri.002G138700 [exp]	7.48	0.9146
AT4G27720			Major facilitator superfamily ...		Potri.015G008100 [exp]	7.93	0.9158
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	13.85	0.9175
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.009G010400 [exp]	16.43	0.9061
AT1G12840		ATVHA-C, DET3	DE-ETIOLATED 3, ARABIDOPSIS TH...		Potri.001G322500 [exp]	16.58	0.9069	Pt-DET3.1
AT3G45850			P-loop containing nucleoside t...		Potri.009G026000 [exp]	16.73	0.9122

Compare expression of checked genes

Potri.018G081000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.