Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11590 156 / 2e-46 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 155 / 3e-46 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 153 / 1e-45 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 152 / 4e-44 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 139 / 1e-40 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G77200 140 / 5e-40 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16280 139 / 5e-40 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G25820 139 / 6e-40 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT2G35700 138 / 6e-40 AP2_ERF ATERF38 ERF family protein 38 (.1) AT3G60490 132 / 9e-37 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G163400 [exp] 280 / 5e-94 AT4G32800 159 / 6e-48 Integrase-type DNA-binding superfamily protein (.1) Potri.018G043900 [exp] 151 / 2e-44 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 144 / 1e-41 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.003G050700 [exp] 144 / 1e-41 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 141 / 1e-40 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 140 / 3e-40 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 135 / 4e-38 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.006G238600 [exp] 133 / 2e-37 AT5G11590 199 / 8e-64 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.002G141200 [exp] 133 / 3e-37 AT2G44940 158 / 6e-47 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034949 [exp] 193 / 7e-60 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10043240 [exp] 187 / 3e-58 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10002801 [exp] 160 / 4e-48 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10011123 [exp] 137 / 1e-39 AT5G11590 143 / 6e-43 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 134 / 2e-39 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10001601 [exp] 135 / 2e-38 AT5G11590 159 / 1e-48 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 134 / 5e-38 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10038270 [exp] 133 / 8e-38 AT5G11590 168 / 4e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10025834 [exp] 130 / 2e-36 AT5G11590 164 / 2e-50 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10038607 [exp] 129 / 2e-36 AT5G11590 168 / 1e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.018G085700.1 pacid=42801252 polypeptide=Potri.018G085700.1.p locus=Potri.018G085700 ID=Potri.018G085700.1.v4.1 annot-version=v4.1 ATGACTGTTTCGCCGGTATCAAACTCCAACTCCGACACAGACTCCACAAGCACTTACTCCTCCTCCTTGCAAGCCCTGTCTTCCTCATCTTCATCAGGAT TATCACCAAACCCGGTGTCTAAACCCGACCCGGAAGAAAACCCAAGAAAACCAAAGAGGCCAAGAGAAAGCACCAGCACCAGCAGCAACAGCAACAGCAA CAGCAAGCACCCGGTATTCAGGGGGGTCCGAATGCGGACATGGGGAAAATGGGTGTCGGAGATCCGGGAGCCCAGAAAGAAGAATCGGATCTGGCTAGGC ACCTTTTCCACCCCAGAGATGGCAGCACGTGCCCATGACGTGGCAGCCTTGAGCATTAAAGGCAACTCAGCCATCCTCAATTTCCCCAAACTTGCCGGGT CTCTGCCACGACCCGCTTCTAACTCTCCACGTGATGTCCAAGCTGCCGCCGCAAAAGCCGCTTCTATGGACTTCAACATTGTTCCTTCGGCTCCCACCAA AGTCTGCGACGATGAAAATAACAGTAACAGCAACGACTCTACGGCGAGTAATAATAACCGGTCATCATCCTCGCTAGTGACACAGTCCTCCTCCTCCCCG TCCTCATCGTCAACAGCAGAGGTGACATCATCACCAAGTGACGTGGCGACTCCTGAAGAACTGAGCGAGATAGTTGAGTTGCCGAGTCTGGAAACAAATC TCGAGGAATTTCCTGAGTTTGTTTTGCTTGGTGACTCGTGGCCGTACAATATTAACCAGTCCTGGTATTGTGAGGACTACGGTGCTGTGGGTACTGGGTA TTTTAGCGATCAGTATTTGTCAATAATTCCAGAAAGTAATGTGATTACGACTACTGGAGCTTTTGAGACTTCATTGTGGGAGCATTAA
AA sequence Show only first row Show all	>Potri.018G085700.1 pacid=42801252 polypeptide=Potri.018G085700.1.p locus=Potri.018G085700 ID=Potri.018G085700.1.v4.1 annot-version=v4.1 MTVSPVSNSNSDTDSTSTYSSSLQALSSSSSSGLSPNPVSKPDPEENPRKPKRPRESTSTSSNSNSNSKHPVFRGVRMRTWGKWVSEIREPRKKNRIWLG TFSTPEMAARAHDVAALSIKGNSAILNFPKLAGSLPRPASNSPRDVQAAAAKAASMDFNIVPSAPTKVCDDENNSNSNDSTASNNNRSSSSLVTQSSSSP SSSSTAEVTSSPSDVATPEELSEIVELPSLETNLEEFPEFVLLGDSWPYNINQSWYCEDYGAVGTGYFSDQYLSIIPESNVITTTGAFETSLWEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32800	AP2_ERF		Integrase-type DNA-binding sup...		Potri.018G085700 [exp]	0	1
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.017G110500 [exp]	23.53	0.7564
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.002G207050 [exp]	29.29	0.7323
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.005G073800 [exp]	34.64	0.6893
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.001G086700 [exp]	45.66	0.7162
AT1G23080		PIN7, ATPIN7	ARABIDOPSIS PIN-FORMED 7, Auxi...		Potri.014G146800 [exp]	53.06	0.7203	PIN15
AT3G45140		ATLOX2, LOX2	ARABIODOPSIS THALIANA LIPOXYGE...		Potri.001G015300 [exp]	59.89	0.6880	Pt-LOX2.4
AT3G17210		ATHS1	A. THALIANA HEAT STABLE PROTEI...		Potri.010G150800 [exp]	60.00	0.6960	Pt-SP1.1
AT4G16447			unknown protein		Potri.006G016500 [exp]	70.28	0.6559
AT1G22400		ATUGT85A1, UGT8...	ARABIDOPSIS THALIANA UDP-GLUCO...		Potri.005G073766 [exp]	81.84	0.6327
AT3G57400			unknown protein		Potri.016G056300 [exp]	123.07	0.6118

Compare expression of checked genes

Potri.018G085700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.