Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57480 743 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 728 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30250 616 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28580 358 / 2e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40010 350 / 4e-115 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28510 345 / 4e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 339 / 9e-112 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 331 / 2e-108 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 327 / 9e-107 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 326 / 3e-106 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G169000 [exp] 893 / 0 AT5G57480 776 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G231200 [exp] 366 / 3e-121 AT4G25835 359 / 1e-118 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G024400 [exp] 363 / 2e-120 AT4G25835 362 / 4e-120 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.004G012500 [exp] 348 / 9e-115 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 346 / 4e-114 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 346 / 4e-114 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 338 / 5e-111 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 339 / 6e-111 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 338 / 7e-111 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025479 [exp] 475 / 3e-166 AT5G57480 487 / 4e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10006968 [exp] 392 / 3e-134 AT5G57480 399 / 3e-137 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014496 [exp] 357 / 6e-118 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 349 / 5e-115 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 343 / 3e-112 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 340 / 2e-111 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10014498 [exp] 337 / 3e-110 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015802 [exp] 325 / 5e-106 AT3G50940 462 / 9e-161 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015349 [exp] 315 / 4e-102 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10037004 [exp] 314 / 6e-102 AT3G50930 457 / 9e-159 cytochrome BC1 synthesis (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.018G093600.2 pacid=42800445 polypeptide=Potri.018G093600.2.p locus=Potri.018G093600 ID=Potri.018G093600.2.v4.1 annot-version=v4.1 ATGAAGGAATATTGGGGCTCCCTGGCCTCAGTACTTGGTGTTTTGGCCTTTTGTCAAAGTCTCCTTCAAGTATTGTTTCCACCAGAACTCCGGTTTGCAG CACTCAAGCTCTTCAACCGGATCTTTAACGTGTTCAATTCTTATTGCTACTTTGACATCACAGAAATTGATGGAGTTAACACCAACGAGCTTTACAACGC AGTCCAGCTCTATTTAAGTTCCTCTGTCTCCATCTCTGGTAGCCGTTTGAGCCTCACTCGTGCTCTCAATTCAAGTGCCATAACTTTTGGCCTAACAAAC AATGACACACTCTTTGACACCTTCAATGGTGTCAATGTCCTTTGGGAACATATTGTGACTCAAAGGCAAGCGCAGACATTTTCCTGGCGTCCAATGCCTG ATGAGAAGAGAGGTTTCACTCTACGTATCAAGAAAAAGGACAAGTCTTTGATTCTTGATTCTTATCTTGATTACATTATGGAGAAAGCCAATGATATAAG GAGGAAAAATGAGGACAGGCTTTTGTATACTAATTCAAGAGGTGGGTCTTTGGATTCAAGAGGGCATCCTTGGGAGTCAGTGCCATTTAAGCATCCAAGT ACTTTTGAAACTCTGGCTATGGACCCTGCCAAGAAAGGTGAGATCATGGAAGATTTGAAAGATTTTGCAAATGGTCAATCTTTTTATCAAAAGACTGGAA GAGCTTGGAAGAGAGGTTATTTGCTCTATGGACCTCCTGGTACTGGTAAATCTAGCATGATTGCTGCTATGGCTAATTATCTTGGTTACGATATCTATGA TCTTGAATTGACTGAGGTACACAATAACTCTGAACTTAGAAAACTTTTGATGAAAACAAGCTCAAAATCTATCATTGTTATTGAGGATATTGATTGTTCT ATTAATTTGAGTAATAGGAAGAAGGGTACTGCTAATAATAGTTCAATTGGGAGGAGTTACTGTGACCCAGAAATGCGATCTGGCCCCGGTGTTGGTACTG GTGATGAAGGGGGGAATTCAATAACTTTATCTGGGTTATTGAATTTTACTGATGGTTTATGGTCGTGTTGTGGGAGTGAGAGGATATTTGTGTTCACTAC AAACCACGTTGACAAACTTGATCCTGCATTGCTAAGGAGTGGTAGGATGGACATGCATGTTTTCATGAATTACTGTTCATTTCCTGCATTGAAGATTTTG TTGAAGAATTATTTGGGGCGTGAAGAAAGTGACTTGGATGAAGGGGTCTTGAAGGAATTGGAAGAGGTTATTGATAAGGCAGAGATGACTCCTGCTGATA TCAGTGAGTTATTGATCAAGAACAGGAGAAACAAGGACAAGGCAGTGATTGAATTGTTGGAGGCACTGAAGGAGAGGGCAGAGAGGAAATCGAAGAGTGG AGAATGTGTTAGAGAGAAGAATTTGAATGACGTGGAAGAGGAAGAGCAAGAGAAGAGAGCCTTGGATAGTCCTAAAGAAGGTTGTGCCTTTGACGAGAGC TGCAAGAAAGATGAGGAGGATGAAGAAAAGAAGATTAAATGA
AA sequence Show only first row Show all	>Potri.018G093600.2 pacid=42800445 polypeptide=Potri.018G093600.2.p locus=Potri.018G093600 ID=Potri.018G093600.2.v4.1 annot-version=v4.1 MKEYWGSLASVLGVLAFCQSLLQVLFPPELRFAALKLFNRIFNVFNSYCYFDITEIDGVNTNELYNAVQLYLSSSVSISGSRLSLTRALNSSAITFGLTN NDTLFDTFNGVNVLWEHIVTQRQAQTFSWRPMPDEKRGFTLRIKKKDKSLILDSYLDYIMEKANDIRRKNEDRLLYTNSRGGSLDSRGHPWESVPFKHPS TFETLAMDPAKKGEIMEDLKDFANGQSFYQKTGRAWKRGYLLYGPPGTGKSSMIAAMANYLGYDIYDLELTEVHNNSELRKLLMKTSSKSIIVIEDIDCS INLSNRKKGTANNSSIGRSYCDPEMRSGPGVGTGDEGGNSITLSGLLNFTDGLWSCCGSERIFVFTTNHVDKLDPALLRSGRMDMHVFMNYCSFPALKIL LKNYLGREESDLDEGVLKELEEVIDKAEMTPADISELLIKNRRNKDKAVIELLEALKERAERKSKSGECVREKNLNDVEEEEQEKRALDSPKEGCAFDES CKKDEEDEEKKIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G57480			P-loop containing nucleoside t...		Potri.018G093600 [exp]	0	1
AT5G07440		GDH2	glutamate dehydrogenase 2 (.1....		Potri.012G113500 [exp]	24.97	0.8103
AT5G42740			Sugar isomerase (SIS) family p...		Potri.002G262101 [exp]	26.15	0.7739
AT1G23870		ATTPS9	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.012G078500 [exp]	35.41	0.7854	Pt-TPS8.1
AT5G05800			unknown protein		Potri.018G054501 [exp]	47.14	0.7988
AT1G73890			Bifunctional inhibitor/lipid-t...		Potri.015G054000 [exp]	63.07	0.7197
					Potri.004G084050 [exp]	95.76	0.7740
					Potri.007G142700 [exp]	152.66	0.7488
AT1G09240		ATNAS3	ARABIDOPSIS THALIANA NICOTIANA...		Potri.010G143100 [exp]	160.31	0.7138
AT2G20060			Ribosomal protein L4/L1 family...		Potri.006G270501 [exp]	164.47	0.7218
AT3G14470			NB-ARC domain-containing disea...		Potri.017G138100 [exp]	216.49	0.7101

Compare expression of checked genes

Potri.018G093600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.