Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28960 349 / 5e-118 Transmembrane amino acid transporter family protein (.1) AT5G15240 313 / 1e-103 Transmembrane amino acid transporter family protein (.1.2) AT2G39130 261 / 7e-82 Transmembrane amino acid transporter family protein (.1) AT5G02180 252 / 2e-78 Transmembrane amino acid transporter family protein (.1) AT5G02170 249 / 7e-78 Transmembrane amino acid transporter family protein (.1.2) AT2G41190 248 / 6e-77 Transmembrane amino acid transporter family protein (.1) AT3G09340 246 / 1e-76 Transmembrane amino acid transporter family protein (.1) AT3G09330 246 / 2e-76 Transmembrane amino acid transporter family protein (.1) AT3G54830 228 / 2e-69 Transmembrane amino acid transporter family protein (.1) AT5G16740 158 / 5e-44 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G086500 [exp] 345 / 2e-116 AT3G28960 411 / 4e-142 Transmembrane amino acid transporter family protein (.1) Potri.010G169000 [exp] 343 / 7e-116 AT3G28960 381 / 2e-130 Transmembrane amino acid transporter family protein (.1) Potri.017G083500 [exp] 332 / 4e-111 AT5G15240 448 / 4e-156 Transmembrane amino acid transporter family protein (.1.2) Potri.017G083700 [exp] 323 / 8e-108 AT3G28960 456 / 2e-159 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 264 / 5e-83 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G226000 [exp] 260 / 1e-81 AT2G39130 708 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.016G100300 [exp] 238 / 2e-73 AT5G02180 587 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.006G038700 [exp] 191 / 2e-56 AT2G41190 459 / 9e-159 Transmembrane amino acid transporter family protein (.1) Potri.002G233200 [exp] 161 / 8e-45 AT5G16740 416 / 5e-143 Transmembrane amino acid transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012824 [exp] 346 / 1e-116 AT5G15240 425 / 3e-147 Transmembrane amino acid transporter family protein (.1.2) Lus10030469 [exp] 334 / 1e-111 AT5G15240 405 / 4e-139 Transmembrane amino acid transporter family protein (.1.2) Lus10005239 [exp] 326 / 2e-108 AT5G15240 509 / 4e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10030683 [exp] 323 / 2e-107 AT5G15240 510 / 2e-180 Transmembrane amino acid transporter family protein (.1.2) Lus10039190 [exp] 259 / 3e-81 AT2G39130 652 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010855 [exp] 236 / 3e-71 AT5G02170 501 / 2e-171 Transmembrane amino acid transporter family protein (.1.2) Lus10023029 [exp] 221 / 8e-69 AT3G28960 280 / 6e-92 Transmembrane amino acid transporter family protein (.1) Lus10003817 [exp] 214 / 2e-63 AT2G41190 615 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10010457 [exp] 216 / 4e-62 AT5G04140 2772 / 0.0 FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE 1, FERREDOXIN-DEPENDENT GLUTAMATE SYNTHASE, glutamate synthase 1 (.1.2) Lus10024374 [exp] 198 / 3e-58 AT5G02180 446 / 4e-152 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF03222 [poplar] [flax] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Potri.018G099700.1 pacid=42801377 polypeptide=Potri.018G099700.1.p locus=Potri.018G099700 ID=Potri.018G099700.1.v4.1 annot-version=v4.1 ATGGAAAATAAACAAGTAAGCTTCCTAAAGACTTGCATTAATGGCATCAACGCTCTTTCAGGAATTGGCATTCTATCCATTCCGTATGCCCTTTCAGCAG GAGGCTGGTTAAGCTTGATCCTGCTGATCTTGATTGCGGCTGCAGCCTGCTTTACTGGACTTCTGATGCGCAGATGCATGGATAGAAATCCTAATGTTAC AAGTTATTCTGACATTGCCAGTCATGCATTTGGACGCAGAGGAAAATTAGTAGCGTCTTTCTTCACCTCTTTAGAGCTTTATTTTGTCGCCACTGGTTTT TTAATAATGGAAGGGGACAGCTTGCATAAGCTTTCTCCGAACTTTGCATTAAAGCTGGGAAGCCTTTCTATAGATGGCAGGCATTCTTTTGTTATTCTTT CAGGTATTTTGATCTTGCCTACTATGTGGCTAAGTAACCTCGGTGTTATGTCCTATGTTTCGGCCTGCGGGGTGCTGTCTTCTCTGGTTGTAGTTGTTTG TGTTTTGTGTGTTGGTGTGACTAAAGGGGTTGGATTTCATGGCAAAGGATCACTGATAAATTTACAAGGGGTGCCTACTGCACTCAGTTTGTACGCTTTT TGCTATGGTGCTCATGCATTGTTCCCTAGCATATACAATTCAATGAGAAAGAAAAACCAGTTTTCCAAGGTCATGTTTGTAAGTTTTGTCATATGTACTA TCACCAACTTATCTATGGCCGTATTGGGCTATCTTATATATGGTCAGAATGTGCAATCTCAAGTTACATTAAATCTACCTACGCAAAAGCTCAGCTCCAA GATAGCAATATACAGCATATTGGCAGGTCCAATTGCCAAGTATGCATTAACAATAACACCGATTGCCACTGCAATTGAAAGTGTTTTGCCAGACAGGTAT CAAGATAGTAAGTCGATAGGTATTCTTGTCAGAATGTCTTTGTTAATTAGCACAGTAGTTATGGCCATGGTATTTCCATCTTTTCAGTCCTTGACATCTC TAAGTGGAGCGGCTCTCATCGTTATTGTTTCATTCTTCCTCCCATGTGCATGTTACTTGAAGATTTTTAAAGTATATCAGAAATGGGGAATTGAGCTAGC AGGTATCTTGACAATAATGCTAATGTCAGTTGTTGTTGGTGCTGTGGGCACATATTCATCTATTGCTCAGACTGTGAAGCATAATTAA
AA sequence Show only first row Show all	>Potri.018G099700.1 pacid=42801377 polypeptide=Potri.018G099700.1.p locus=Potri.018G099700 ID=Potri.018G099700.1.v4.1 annot-version=v4.1 MENKQVSFLKTCINGINALSGIGILSIPYALSAGGWLSLILLILIAAAACFTGLLMRRCMDRNPNVTSYSDIASHAFGRRGKLVASFFTSLELYFVATGF LIMEGDSLHKLSPNFALKLGSLSIDGRHSFVILSGILILPTMWLSNLGVMSYVSACGVLSSLVVVVCVLCVGVTKGVGFHGKGSLINLQGVPTALSLYAF CYGAHALFPSIYNSMRKKNQFSKVMFVSFVICTITNLSMAVLGYLIYGQNVQSQVTLNLPTQKLSSKIAIYSILAGPIAKYALTITPIATAIESVLPDRY QDSKSIGILVRMSLLISTVVMAMVFPSFQSLTSLSGAALIVIVSFFLPCACYLKIFKVYQKWGIELAGILTIMLMSVVVGAVGTYSSIAQTVKHN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28960			Transmembrane amino acid trans...		Potri.018G099700 [exp]	0	1
AT1G72490			unknown protein		Potri.001G166700 [exp]	6.32	0.7553
AT1G15120			Ubiquinol-cytochrome C reducta...		Potri.002G069301 [exp]	7.87	0.6547
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.015G101600 [exp]	9.05	0.6300
					Potri.014G100650 [exp]	9.79	0.7441
AT2G46570		LAC6	laccase 6 (.1)		Potri.014G100600 [exp]	16.30	0.7482
AT5G24810			ABC1 family protein (.1.2)		Potri.018G003600 [exp]	18.49	0.7136
					Potri.012G028432 [exp]	19.74	0.7355
AT5G66390			Peroxidase superfamily protein...		Potri.007G019300 [exp]	20.17	0.7341
AT1G69630			F-box/RNI-like superfamily pro...		Potri.013G146800 [exp]	21.81	0.7166
AT5G53550		ATYSL3, YSL3	YELLOW STRIPE like 3 (.1.2)		Potri.012G027800 [exp]	22.18	0.7335

Compare expression of checked genes

Potri.018G099700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.