Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51120 286 / 9e-95 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G50680 281 / 3e-93 AP2_ERF AP2/B3 transcription factor family protein (.1) AT1G13260 201 / 9e-62 AP2_ERF EDF4, RAV1 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) AT3G25730 194 / 4e-59 AP2_ERF EDF3 ethylene response DNA binding factor 3 (.1) AT1G68840 189 / 5e-57 AP2_ERF EDF2, RAV2, RAP2.8, TEM2, AtRAV2 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) AT1G25560 186 / 1e-55 AP2_ERF EDF1, TEM1 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) AT1G01030 120 / 6e-31 B3 NGA3 NGATHA3, AP2/B3-like transcriptional factor family protein (.1) AT4G01500 118 / 2e-30 B3 NGA4 NGATHA4, AP2/B3-like transcriptional factor family protein (.1) AT2G46870 117 / 2e-30 B3 NGA1 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) AT3G61970 114 / 2e-29 B3 NGA2 NGATHA2, AP2/B3-like transcriptional factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186301 [exp] 566 / 0 AT1G51120 287 / 3e-95 AP2/B3 transcription factor family protein (.1) Potri.003G212800 [exp] 299 / 9e-100 AT1G51120 312 / 7e-105 AP2/B3 transcription factor family protein (.1) Potri.008G117100 [exp] 194 / 5e-59 AT1G25560 422 / 6e-148 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.010G129200 [exp] 192 / 5e-58 AT1G25560 441 / 1e-154 TEMPRANILLO 1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, AP2/B3 transcription factor family protein (.1) Potri.006G208100 [exp] 120 / 6e-31 AT2G36080 228 / 3e-73 AP2/B3-like transcriptional factor family protein (.1.2) Potri.016G074500 [exp] 120 / 9e-31 AT2G36080 219 / 9e-70 AP2/B3-like transcriptional factor family protein (.1.2) Potri.011G149700 [exp] 120 / 2e-30 AT2G46870 218 / 2e-67 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.002G181600 [exp] 119 / 3e-30 AT2G46870 264 / 6e-86 NGATHA1, AP2/B3-like transcriptional factor family protein (.1) Potri.014G107200 [exp] 118 / 5e-30 AT2G46870 241 / 6e-77 NGATHA1, AP2/B3-like transcriptional factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036282 [exp] 336 / 8e-115 AT1G50680 268 / 2e-88 AP2/B3 transcription factor family protein (.1) Lus10021707 [exp] 186 / 7e-56 AT1G13260 369 / 1e-127 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10041487 [exp] 186 / 1e-55 AT1G13260 416 / 8e-146 ETHYLENE RESPONSE DNA BINDING FACTOR 4, related to ABI3/VP1 1 (.1) Lus10021848 [exp] 145 / 1e-41 AT1G50680 109 / 2e-28 AP2/B3 transcription factor family protein (.1) Lus10026212 [exp] 144 / 2e-41 AT1G51120 150 / 4e-44 AP2/B3 transcription factor family protein (.1) Lus10034276 [exp] 118 / 2e-31 AT1G68840 233 / 4e-76 TEMPRANILLO 2, RELATED TO AP2 8, ETHYLENE RESPONSE DNA BINDING FACTOR 2, related to ABI3/VP1 2 (.1.2) Lus10021326 [exp] 117 / 3e-30 AT5G06250 202 / 2e-63 AP2/B3-like transcriptional factor family protein (.1.2) Lus10004226 [exp] 108 / 1e-26 AT5G06250 183 / 4e-55 AP2/B3-like transcriptional factor family protein (.1.2) Lus10025226 [exp] 66 / 2e-11 AT4G32010 808 / 0.0 VP1/ABI3-LIKE 2, HSI2-like 1 (.1) Lus10029431 [exp] 59 / 5e-11 AT2G36080 69 / 3e-16 AP2/B3-like transcriptional factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain CL0405 [poplar] [flax] DNA_b-psBarrel PF02362 [poplar] [flax] B3 B3 DNA binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G109201.2 pacid=42801786 polypeptide=Potri.018G109201.2.p locus=Potri.018G109201 ID=Potri.018G109201.2.v4.1 annot-version=v4.1 ATGGAAGATGAAACTGTGAGCTTGATTTCAAATGGAGAAACATCTGTAGTTGAAGAATTTTCAGATTCAAATAGCAGCACTCATCCATTTCCAGCAAGCA AGCGTGCAAGGTCTGGCAGTAATATTAGCGCTTCAAAATTCAAAGGGGTTGTGCCACTGCCAAATGGTCACTGGGGTTGTCAAATATATGCCAACCACCA ACGGATTTGGCTTGGAACCTTTAAATCTGAAAAGGAGGCAGCTATGGCTTATGATAGTGCAGCAATAAAACTCCGGAGTGGCGATTCCCGGAGAAATTTC CCCCTAACTGATGTAACTGTTGAAGAGCCAAAATTTCGAAGTTATTTCAGTACTGAAGTCGTGCTTAATATGATAAAGGATGGTACCTACCAATGCAAGT TTGCTAATTTTACAAGGACATGCTCTCAAAGTGTTGAGACTGAACTTAGCCTTAAGCTTATGATGCCACAGAGCAATCAAGGCCTAACATGTAAGCAACT GTTTCAAAAGGAGCTAACACCAAGTGATGTTGGTAAACTAAATAGGATTGTCATCCCTAAGAAATACGCTATCAAGTACTTCCCACATATTTCTGAAAGT GCTGAAGAAGTTGACGGTGTGATGCTTGCTTTCTATGACAAGTCTATGAAGTTGTGGAAATTTCGGTATTGTTATTGGAAGAGCAGTCAGAGTTATGTCT TCACGAGGGGTTGGAACCGATTCGTGAAGGAGAAAAAGTTGAAGGCAAATGACACTATTTCTTTCAGTTTATGTGAGAGAGGAGAAACTGTAGATTCTGC TGCTCAAACATTCAATATGATTGATGTAAACAACCGTGAAAACAGCAGTAGCATCTCTGAGTTGTCCAGCCAAAGCATTGCGTCTAAAGTAGAGCTGCAG CTTAACCCAGGCCCTCTCATCGCCCGTGATAGTACTGTCAAGAAGAAAGAGAGAATGAGGGGCGCAAACAAGCGAACGCAAAATGCTGAGAAAGTGGGCT TTAAACTGTTTGGCATACAAATTATCTGA
AA sequence Show only first row Show all	>Potri.018G109201.2 pacid=42801786 polypeptide=Potri.018G109201.2.p locus=Potri.018G109201 ID=Potri.018G109201.2.v4.1 annot-version=v4.1 MEDETVSLISNGETSVVEEFSDSNSSTHPFPASKRARSGSNISASKFKGVVPLPNGHWGCQIYANHQRIWLGTFKSEKEAAMAYDSAAIKLRSGDSRRNF PLTDVTVEEPKFRSYFSTEVVLNMIKDGTYQCKFANFTRTCSQSVETELSLKLMMPQSNQGLTCKQLFQKELTPSDVGKLNRIVIPKKYAIKYFPHISES AEEVDGVMLAFYDKSMKLWKFRYCYWKSSQSYVFTRGWNRFVKEKKLKANDTISFSLCERGETVDSAAQTFNMIDVNNRENSSSISELSSQSIASKVELQ LNPGPLIARDSTVKKKERMRGANKRTQNAEKVGFKLFGIQII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51120	AP2_ERF		AP2/B3 transcription factor fa...		Potri.018G109201 [exp]	0	1
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	3.60	0.8502
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	4.00	0.8367
AT2G29200		APUM1	pumilio 1 (.1)		Potri.010G201100 [exp]	8.66	0.8324
AT3G14470			NB-ARC domain-containing disea...		Potri.004G197900 [exp]	11.22	0.7896
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Potri.001G420400 [exp]	14.00	0.7727
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.006G205800 [exp]	15.49	0.7993
AT2G47310			flowering time control protein...		Potri.002G192900 [exp]	16.52	0.8036	FCA.3
AT4G34280			transducin family protein / WD...		Potri.007G051500 [exp]	18.00	0.7685
AT4G29940	HD	PRHA	pathogenesis related homeodoma...		Potri.006G075500 [exp]	20.34	0.8179
AT4G31430			unknown protein		Potri.018G006200 [exp]	20.44	0.7967

Compare expression of checked genes

Potri.018G109201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.