Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25180 349 / 2e-111 GARP ARR12 response regulator 12 (.1) AT5G58080 348 / 9e-111 GARP ARR18 response regulator 18 (.1) AT4G31920 318 / 3e-100 GARP ARR10 response regulator 10 (.1) AT4G16110 312 / 1e-96 GARP ARR2 response regulator 2 (.1) AT3G16857 301 / 4e-92 GARP ARR1 response regulator 1 (.1.2) AT1G67710 260 / 2e-78 GARP ARR11 response regulator 11 (.1) AT2G01760 252 / 4e-77 GARP ARR14 response regulator 14 (.1) AT5G49240 173 / 1e-48 GARP APRR4 pseudo-response regulator 4 (.1) AT3G62670 130 / 4e-33 GARP ARR20, MEE41 maternal effect embryo arrest 41, response regulator 20 (.1) AT5G07210 112 / 9e-26 GARP ARR21 response regulator 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G188000 [exp] 1074 / 0 AT2G25180 386 / 8e-126 response regulator 12 (.1) Potri.006G262100 [exp] 508 / 7e-172 AT2G25180 381 / 6e-124 response regulator 12 (.1) Potri.018G021300 [exp] 462 / 3e-154 AT2G25180 364 / 2e-117 response regulator 12 (.1) Potri.008G213500 [exp] 320 / 2e-99 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.010G001000 [exp] 320 / 2e-99 AT4G16110 602 / 0.0 response regulator 2 (.1) Potri.008G135500 [exp] 298 / 3e-91 AT4G16110 370 / 3e-119 response regulator 2 (.1) Potri.010G105600 [exp] 291 / 1e-88 AT4G16110 376 / 2e-121 response regulator 2 (.1) Potri.010G053100 [exp] 266 / 2e-80 AT1G67710 380 / 2e-126 response regulator 11 (.1) Potri.008G181000 [exp] 252 / 9e-75 AT1G67710 383 / 5e-127 response regulator 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041020 [exp] 394 / 4e-128 AT2G25180 412 / 3e-136 response regulator 12 (.1) Lus10005340 [exp] 394 / 6e-128 AT2G25180 414 / 3e-137 response regulator 12 (.1) Lus10037719 [exp] 320 / 9e-99 AT3G16857 613 / 0.0 response regulator 1 (.1.2) Lus10016846 [exp] 312 / 4e-96 AT3G16857 603 / 0.0 response regulator 1 (.1.2) Lus10019058 [exp] 297 / 5e-92 AT2G25180 290 / 1e-90 response regulator 12 (.1) Lus10036303 [exp] 293 / 4e-90 AT2G25180 294 / 4e-92 response regulator 12 (.1) Lus10006446 [exp] 270 / 3e-83 AT1G67710 377 / 9e-127 response regulator 11 (.1) Lus10011389 [exp] 269 / 3e-83 AT1G67710 385 / 1e-130 response regulator 11 (.1) Lus10025044 [exp] 181 / 1e-49 AT4G31920 220 / 6e-65 response regulator 10 (.1) Lus10027416 [exp] 141 / 4e-35 AT4G16110 169 / 4e-45 response regulator 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G111300.4 pacid=42801164 polypeptide=Potri.018G111300.4.p locus=Potri.018G111300 ID=Potri.018G111300.4.v4.1 annot-version=v4.1 ATGACCGTAGAGGACCAAAGGGGTTGTAATTCAGTTAATGAAAAAATGTTTCCTGTTGGTATGCGTGTTCTAGCTGTTGATGATGACCCAATTTGCCTCA AAGTTTTGGAGAATTTGCTTCGTAAATGCCAGTACGAAGTTACAACTACCAATCAAGCAGTCACTGCTCTGGAAATGTTGAGAGAAAACAGAAACAAGTA TGACTTGGTTATCAGTGACGTTAACATGCCAGACATGGATGGCTTTAAGCTCCTTGAACTCGTGGGGCTCGAAATGGATCTACCGGTTATCATGTTATCA TCTCATGGTGATAAAGAGTTTGTGTTTAAGGGGATTACACATGGTGCTGTTGACTATTTGCTTAAACCTGTTCGATTGGAGGAGCTCAAAAACATATGGC AACATGTAATCAGGAGAAAAAAATGGTATCCCCAGGACCAGAACGGGTCACCAGATCAAGATAAGGGTGGTGATGGAGCTGGGGAGGGGGAACAAGTGAC ATCAACGGGTAGTGCTGATCAAAATGGAAAAGTAAACAGGAAACGCAAGGACCAAGACGAAGAGGAGGAAGGTGAGGGTGAAGATGGAAATGATAATGAA GAATCTGGGAATCAGAAGAAGCCTCGAGTTGTTTGGTCGGTGGAGCTGCATCAAAAGTTTGTCTCTGCTGTCAATCAACTCGGTCTTGACAAGGCTGTTC CAAAGAAAATACTTGACCTGATGAATGTTGATGGGCTTACAAGGGAAAATGTGGCAAGCCATTTGCAGAAATTCAGGCTTTACCTCAAAAGACTAAGTTG TGGGGCAAATCAGCAACCCAACATGGTTGCTGCATTTGGTGCTAAAGATTCATCTTACTTGAGAATGGGTTCGCTGGATGGATTTGGAGATTTTCGCTCT GTGCATGGACCGGGACAGCTTTCAACCACTTCTCTTTCATCATACCCACCCGGGAGTTTGCTTGGTAGATTGAACTCTCCTGGTGGTTTAACCTTGCAGG GAATAGCTTCTCCTGGGCTGCTCCAACCAGGTCATTCCCGATCCTTGAACAATCCTCTCAATACTCTTGGAAAGCTCCAGCCAGGTCTCTTACAAACAAA CCGAGGCAGCACAAATTTATTTCAAGGGATTTCATCAGCATTGGATCCCAAGCAATTTCAATTGAAGTCTATGAACCATTCTGGAGACTTTAATCACAAA GGTGATGCAACAAGTTTTACACTTGCAGGTTGCTTCCCGGATGTCAAAGTGACTATTGGTAGCTTGGGCAATACCATATCTAGTGCCGCAAACAACCCTC AGATGCTTCATGTGAACCCACAACAAAATCAGACTAGGAGATCGTTGGCAACTCAATCTTCTCTAAGCATGCCTTCATTGAATCAGGAGTCTTTTGATGT TGGTGTCCGTGGCTCTTCAAATTTTCTGGATCATAGTAGATGTGATGATAACTGGCAGGGTGTAGTTCAAATGTCCACATTTCCTTCAAACTCTTTGCCA TTGGGTGAGCCTTTCCGACATGATCCATTGCCTACAAGTACCCGGAGAGACAATATATCTTCCACCACCTCTCACATTGTTAATAATCCTCTTGATTTTT CTTCATCGGGTTCTCTCACAGCACCTTTAGAAGATTCCAGATTAGATATGCAAGGACAAGCAGACTTGGTTGGTAATATTTTTCATAATACAAATTACAC ATCAAAGAACAGATGGGGAGAAAATAGCCAAAACTTTAATCCTTGTCTAAATGGTTCGTTTGGTGCCATGAACTCCCTGGTTTCTGGCAATGGTTCCATG AATCCATTGAGCCAGAGTATGGACCAAAGGAAAAGGTTTGATGCATCTGTGCTTGGTCAATCAAACAGTGGGACTCTATCCATGTTTCAGCATCTTGAAG CTGGGAATTCTGCTTTGGACCCAACGGGTATGAGAATACCAAAAATGAGGTCAAATGAGGATTTTCTCTTGGAGCAAACAAAGTCTCCTAATGGTTTCGT TCAAAATAATTATGATTCTTTGGATGATATAGTGAATGCAATGATCAAACGGCAGGATCAAAATGATGGCGTCTTGATGGATGGAGAATTCGGGTTTGAA TCTTACTCACCTGGATCATGCATTTGA
AA sequence Show only first row Show all	>Potri.018G111300.4 pacid=42801164 polypeptide=Potri.018G111300.4.p locus=Potri.018G111300 ID=Potri.018G111300.4.v4.1 annot-version=v4.1 MTVEDQRGCNSVNEKMFPVGMRVLAVDDDPICLKVLENLLRKCQYEVTTTNQAVTALEMLRENRNKYDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLS SHGDKEFVFKGITHGAVDYLLKPVRLEELKNIWQHVIRRKKWYPQDQNGSPDQDKGGDGAGEGEQVTSTGSADQNGKVNRKRKDQDEEEEGEGEDGNDNE ESGNQKKPRVVWSVELHQKFVSAVNQLGLDKAVPKKILDLMNVDGLTRENVASHLQKFRLYLKRLSCGANQQPNMVAAFGAKDSSYLRMGSLDGFGDFRS VHGPGQLSTTSLSSYPPGSLLGRLNSPGGLTLQGIASPGLLQPGHSRSLNNPLNTLGKLQPGLLQTNRGSTNLFQGISSALDPKQFQLKSMNHSGDFNHK GDATSFTLAGCFPDVKVTIGSLGNTISSAANNPQMLHVNPQQNQTRRSLATQSSLSMPSLNQESFDVGVRGSSNFLDHSRCDDNWQGVVQMSTFPSNSLP LGEPFRHDPLPTSTRRDNISSTTSHIVNNPLDFSSSGSLTAPLEDSRLDMQGQADLVGNIFHNTNYTSKNRWGENSQNFNPCLNGSFGAMNSLVSGNGSM NPLSQSMDQRKRFDASVLGQSNSGTLSMFQHLEAGNSALDPTGMRIPKMRSNEDFLLEQTKSPNGFVQNNYDSLDDIVNAMIKRQDQNDGVLMDGEFGFE SYSPGSCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G111300 [exp]	0	1
AT5G64880			unknown protein		Potri.005G083900 [exp]	1.41	0.8808
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.019G085400 [exp]	10.72	0.7974
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.001G185900 [exp]	13.96	0.8157
AT1G15030			Protein of unknown function (D...		Potri.013G149400 [exp]	14.07	0.7886
AT3G14840			Leucine-rich repeat transmembr...		Potri.001G385200 [exp]	15.29	0.7958
AT5G52450			MATE efflux family protein (.1...		Potri.010G116700 [exp]	15.74	0.8217
					Potri.008G106450 [exp]	21.54	0.6987
AT2G41790			Insulinase (Peptidase family M...		Potri.006G050700 [exp]	23.91	0.7689
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	24.24	0.7823
AT1G34300			lectin protein kinase family p...		Potri.016G102700 [exp]	26.64	0.7861

Compare expression of checked genes

Potri.018G111300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.