Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32272 431 / 4e-152 Nucleotide/sugar transporter family protein (.1.2) AT4G31600 105 / 5e-26 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) AT2G13650 76 / 3e-15 GONST1 golgi nucleotide sugar transporter 1 (.1.2.3) AT1G07290 68 / 1e-12 GONST2 golgi nucleotide sugar transporter 2 (.1) AT1G06890 62 / 1e-10 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT2G28315 62 / 2e-10 Nucleotide/sugar transporter family protein (.1) AT1G77610 55 / 3e-08 EamA-like transporter family protein (.1) AT2G30460 54 / 4e-08 Nucleotide/sugar transporter family protein (.1.2) AT1G21870 54 / 6e-08 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G34020 52 / 3e-07 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G026600 [exp] 446 / 5e-158 AT4G32272 493 / 2e-176 Nucleotide/sugar transporter family protein (.1.2) Potri.006G255400 [exp] 442 / 2e-156 AT4G32272 438 / 1e-154 Nucleotide/sugar transporter family protein (.1.2) Potri.006G270700 [exp] 113 / 8e-29 AT4G31600 450 / 3e-160 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.018G009400 [exp] 110 / 1e-27 AT4G31600 447 / 3e-159 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Potri.005G062900 [exp] 89 / 1e-19 AT2G13650 534 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.007G106400 [exp] 80 / 1e-16 AT2G13650 513 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Potri.009G044000 [exp] 72 / 1e-13 AT1G07290 472 / 5e-167 golgi nucleotide sugar transporter 2 (.1) Potri.004G211900 [exp] 71 / 2e-13 AT2G28315 530 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.013G154800 [exp] 62 / 1e-10 AT1G06890 512 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038090 [exp] 461 / 7e-165 AT4G32272 410 / 1e-144 Nucleotide/sugar transporter family protein (.1.2) Lus10006645 [exp] 416 / 3e-146 AT4G32272 359 / 2e-123 Nucleotide/sugar transporter family protein (.1.2) Lus10020119 [exp] 113 / 1e-28 AT4G31600 530 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10026922 [exp] 109 / 2e-27 AT4G31600 517 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1), UDP-N-acetylglucosamine (UAA) transporter family (.2) Lus10024126 [exp] 86 / 3e-18 AT2G13650 535 / 0.0 golgi nucleotide sugar transporter 1 (.1.2.3) Lus10005865 [exp] 69 / 8e-13 AT1G07290 521 / 0.0 golgi nucleotide sugar transporter 2 (.1) Lus10001205 [exp] 62 / 3e-10 AT1G07290 465 / 4e-164 golgi nucleotide sugar transporter 2 (.1) Lus10042700 [exp] 61 / 4e-10 AT1G77610 602 / 0.0 EamA-like transporter family protein (.1) Lus10029663 [exp] 61 / 7e-10 AT1G77610 547 / 0.0 EamA-like transporter family protein (.1) Lus10021464 [exp] 60 / 1e-09 AT2G28315 527 / 0.0 Nucleotide/sugar transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF03151 [poplar] [flax] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Potri.018G127400.1 pacid=42801881 polypeptide=Potri.018G127400.1.p locus=Potri.018G127400 ID=Potri.018G127400.1.v4.1 annot-version=v4.1 ATGGATTCAGAGACCAACAAGAAGCTACCAGTTACTGATCCCTTAAAGAGCGAAGGGAAGGAGAAAAATGGCTCAGCCATGACTAAACAAGGAGCTTATG CTGCCATTTCTTACATGGCCAGTGCAGTTCTCTTGGTAATGTTCAACAAAGCAGCCCTTTCTTCTTACAGTTTCCCATATGCAAACGTCATCACACTCTT TCAGATGCTATGTTCATGCTTATTCCTTTATGTATTGAAATTCTGGAAGATCATATCTTTTACAACTAGTGAACCGCAGAACATGTCTAACAACCCAGCA AGACTTGTATCATTTAAGACATTGCTTCACTCCCTTCCCCTGGCGTTGTCATATCTGCTTTACATGCTGATCACAATGGAATCTGTACGTGCCATAAATG TCCCCATGTACACCACCCTTAGGAGGACTACCGTGGCTTTCACAATGATTGTGGAGTATCTTTTGACAGGACAGAAACATTCCTTGCGTGTTGTTGGCAG TGTTGGGATAATCATACTTGGTGCATTTGTTGCTGGAGCTCGAGATTTGTCATTCGATGCTTATGGCTATGCCGTTGTCTTTGTAGCAAACATTTGTACA GCAGTATATCTTGCTTCTATTGCTCGAATTGGTAAATCTAGTGGCCTTAATAGCTTTGGTCTTATGTGGTGCAATGGTATAATTTGTGGACCAATCTTGC TGTTCTGGACATCAATTAGAGGAGATTTGGAAGCAATGAGGAACTTTCCCTTTCTCTTCTCGCCAGGATTTCAGGTGGTGATGCTTCTTTCCTGTATCAT GGCTTTCCTAATTAATTATTTTGTGTTTATGAATACAACACTAAATTCAGCTTTGACACAGACTATCTGTGGTAATTTGAAGGATCTTTTCACCATTGGA TTTGGCTGGATACTATTTGGTGGGCTTCCATTTGACTTGATGAACGTTGTTGGCCAGTCCCTTGGTTTCTTTGGATCTTGCTTGTATGCCTACTGCAAAC TGAAAGGGCAATAA
AA sequence Show only first row Show all	>Potri.018G127400.1 pacid=42801881 polypeptide=Potri.018G127400.1.p locus=Potri.018G127400 ID=Potri.018G127400.1.v4.1 annot-version=v4.1 MDSETNKKLPVTDPLKSEGKEKNGSAMTKQGAYAAISYMASAVLLVMFNKAALSSYSFPYANVITLFQMLCSCLFLYVLKFWKIISFTTSEPQNMSNNPA RLVSFKTLLHSLPLALSYLLYMLITMESVRAINVPMYTTLRRTTVAFTMIVEYLLTGQKHSLRVVGSVGIIILGAFVAGARDLSFDAYGYAVVFVANICT AVYLASIARIGKSSGLNSFGLMWCNGIICGPILLFWTSIRGDLEAMRNFPFLFSPGFQVVMLLSCIMAFLINYFVFMNTTLNSALTQTICGNLKDLFTIG FGWILFGGLPFDLMNVVGQSLGFFGSCLYAYCKLKGQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32272			Nucleotide/sugar transporter f...		Potri.018G127400 [exp]	0	1
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Potri.016G035400 [exp]	8.12	0.7557
AT4G33160			F-box family protein (.1)		Potri.006G217500 [exp]	10.09	0.6456
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.008G145800 [exp]	13.85	0.7265
AT2G38890			unknown protein		Potri.008G044500 [exp]	15.96	0.7675
AT4G29100	bHLH	bHLH068	basic helix-loop-helix (bHLH) ...		Potri.003G051600 [exp]	17.23	0.6798
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.003G128000 [exp]	17.43	0.7405	Pt-GL3.2
AT3G60966			RING/U-box superfamily protein...		Potri.014G043200 [exp]	17.60	0.7374
AT3G15650			alpha/beta-Hydrolases superfam...		Potri.001G173700 [exp]	20.56	0.6261
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.018G112000 [exp]	26.72	0.7305
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.002G154100 [exp]	34.58	0.6817

Compare expression of checked genes

Potri.018G127400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.