Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25060 73 / 1e-16 AtENODL14 early nodulin-like protein 14 (.1) AT3G20570 70 / 2e-15 AtENODL9 early nodulin-like protein 9 (.1) AT4G31840 66 / 3e-14 AtENODL15 early nodulin-like protein 15 (.1) AT5G20230 66 / 5e-14 SAG14, ATBCB SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) AT1G48940 61 / 3e-12 AtENODL6 early nodulin-like protein 6 (.1) AT2G32300 62 / 4e-12 UCC1 uclacyanin 1 (.1) AT3G18590 61 / 4e-12 AtENODL5 early nodulin-like protein 5 (.1) AT5G14345 56 / 2e-10 AtENODL21 early nodulin-like protein 21 (.1) AT2G31050 56 / 4e-10 Cupredoxin superfamily protein (.1) AT5G07475 55 / 5e-10 Cupredoxin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G128900 [exp] 212 / 7e-72 AT2G25060 78 / 1e-18 early nodulin-like protein 14 (.1) Potri.018G129000 [exp] 202 / 3e-67 AT3G20570 76 / 7e-17 early nodulin-like protein 9 (.1) Potri.006G067200 [exp] 81 / 2e-20 AT5G20230 61 / 3e-12 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.018G129200 [exp] 80 / 7e-19 AT2G32300 94 / 9e-23 uclacyanin 1 (.1) Potri.006G067400 [exp] 77 / 1e-18 AT5G20230 112 / 2e-31 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.018G129400 [exp] 74 / 3e-17 AT5G20230 114 / 6e-32 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.006G067300 [exp] 75 / 6e-17 AT5G20230 97 / 2e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.001G192100 [exp] 73 / 2e-16 AT5G20230 100 / 2e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Potri.002G101300 [exp] 67 / 1e-14 AT1G72230 131 / 6e-39 Cupredoxin superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006657 [exp] 84 / 8e-20 AT1G45063 106 / 1e-26 copper ion binding;electron carriers (.1.2) Lus10038098 [exp] 84 / 1e-19 AT1G45063 107 / 1e-27 copper ion binding;electron carriers (.1.2) Lus10008720 [exp] 74 / 5e-17 AT1G72230 140 / 2e-42 Cupredoxin superfamily protein (.1) Lus10035911 [exp] 74 / 5e-17 AT5G20230 95 / 3e-24 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10020944 [exp] 74 / 6e-17 AT1G72230 141 / 1e-42 Cupredoxin superfamily protein (.1) Lus10025752 [exp] 72 / 6e-16 AT5G20230 101 / 1e-26 SENESCENCE ASSOCIATED GENE 14, BLUE COPPER BINDING PROTEIN, blue-copper-binding protein (.1) Lus10002614 [exp] 68 / 3e-15 AT2G32300 100 / 1e-26 uclacyanin 1 (.1) Lus10011158 [exp] 69 / 5e-15 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10043063 [exp] 69 / 7e-15 AT3G20570 153 / 4e-47 early nodulin-like protein 9 (.1) Lus10019405 [exp] 70 / 8e-15 AT1G45063 107 / 3e-27 copper ion binding;electron carriers (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF02298 [poplar] [flax] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Potri.018G128800.2 pacid=42801154 polypeptide=Potri.018G128800.2.p locus=Potri.018G128800 ID=Potri.018G128800.2.v4.1 annot-version=v4.1 ATGGGCAAAGTAGCATGTCTCGGGTTTAGGGCTAATACTTACACAGTTGGAGGTGATTTGGGATGGATTATTCCTCCGAACAGCTCTTACTATGAGGAAT GGACCAGCCAGAGCACATTTCAGATAGGAGACTCCTTCGTATTCAACTGGACAACCGGAACACATACCGCAACTGAAGTAAGTACCAAGGAGGAGTACGA TAATTGCACAAAGATGGGATTAATATTGAAAGATGCAGGAGTTAAAGTCACTTTCAAAGATAATGACACGCACTACTTCCTCTGCTCTGAAGGAACACAC TGTGAGCAAGGCCAGAAGATGATAATCAAAATTGGAGATGGCATACCACCAAGTTTTGCAGCTCCATCTCTTACCGCGGCCGCCGCCTTATCTGCTCTTT TCTTCTCCACCTTAGCCATCTTCTTCTTAAACTAA
AA sequence Show only first row Show all	>Potri.018G128800.2 pacid=42801154 polypeptide=Potri.018G128800.2.p locus=Potri.018G128800 ID=Potri.018G128800.2.v4.1 annot-version=v4.1 MGKVACLGFRANTYTVGGDLGWIIPPNSSYYEEWTSQSTFQIGDSFVFNWTTGTHTATEVSTKEEYDNCTKMGLILKDAGVKVTFKDNDTHYFLCSEGTH CEQGQKMIIKIGDGIPPSFAAPSLTAAAALSALFFSTLAIFFLN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25060		AtENODL14	early nodulin-like protein 14 ...		Potri.018G128800 [exp]	0	1
AT2G25060		AtENODL14	early nodulin-like protein 14 ...		Potri.018G128900 [exp]	1.00	0.9652
AT2G29420		GST25, ATGSTU7	GLUTATHIONE S-TRANSFERASE 25, ...		Potri.012G052200 [exp]	3.46	0.9581
					Potri.005G167150 [exp]	8.00	0.9359
					Potri.018G128750 [exp]	9.21	0.9515
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.003G202200 [exp]	10.95	0.9517
AT4G21020			Late embryogenesis abundant pr...		Potri.011G054200 [exp]	12.00	0.8354	Pt-PM32.2
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.018G129000 [exp]	13.63	0.8570
AT1G78090		ATTPPB	Arabidopsis thaliana trehalose...		Potri.015G020300 [exp]	14.14	0.9178
AT4G03540			Uncharacterised protein family...		Potri.004G043300 [exp]	14.14	0.9472
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.010G085300 [exp]	14.49	0.9499

Compare expression of checked genes

Potri.018G128800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.