Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 380 / 4e-114 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 343 / 5e-99 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 215 / 8e-58 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G07040 208 / 3e-55 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT1G50180 206 / 8e-55 NB-ARC domain-containing disease resistance protein (.1) AT3G46730 200 / 7e-53 NB-ARC domain-containing disease resistance protein (.1) AT1G58400 197 / 1e-51 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58848 196 / 7e-51 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 196 / 7e-51 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G46530 191 / 9e-50 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G135800 [exp] 2230 / 0 AT3G14470 403 / 3e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170400 [exp] 1587 / 0 AT3G14470 401 / 3e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 1560 / 0 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.004G169800 [exp] 1555 / 0 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 1533 / 0 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 1526 / 0 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170700 [exp] 1485 / 0 AT3G14470 409 / 3e-124 NB-ARC domain-containing disease resistance protein (.1) Potri.013G041800 [exp] 1387 / 0 AT3G14470 325 / 2e-94 NB-ARC domain-containing disease resistance protein (.1) Potri.003G015500 [exp] 1379 / 0 AT3G14470 402 / 1e-122 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 478 / 7e-150 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 448 / 4e-138 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 439 / 1e-133 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 425 / 2e-128 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 407 / 2e-121 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 402 / 4e-120 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 390 / 4e-116 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 391 / 5e-116 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 393 / 1e-115 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 376 / 2e-111 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.018G135700.2 pacid=42801393 polypeptide=Potri.018G135700.2.p locus=Potri.018G135700 ID=Potri.018G135700.2.v4.1 annot-version=v4.1 ATGGCAGCAGAACTTCTTCTTACGTTTGCCGTGGAGGAGTCTTTGCGAAGGATGATTTCCATAGCTGCTGAAGGGATCGGACTTGCTTGGGGACTGAATG GACAGCTGCAAAACCTCGTAGATTCTTTGACCATGATTCGAGCTGTGTTGCGAGATGCAGCAACAAGGCCAGCGCCAGAAGATGGTGTGAAGCGTTGGCT GGATAAGCTTCAAGATGGAGCTCATGATGCTGAAGATGTTCTAGACGAGTTTGATTATGAACAGAAGGGAAAGGTATGTGATTTTGTTTCACTCCACAAC CCTATTGTATTCCGTTGGAAAATGTGTCATAAAGTCAAGAGGATCCATGGAGCCTTAGATGAAATCCTGAAACTTGGCGGTGATCTTGGATTGGCAAATC GCCCTGAAGTTAGGCGAGATCCACCCCGGCAGACAGATTCCTTCCTTGACAGCTCAGCTGACACCTCAGCAGTTGTAGTAGGAAGGGAGGATGATGTCTC TAAAGTTGTGGAATGGCTGACCGAATCCCAACATGTCCTTTCGGTTGTTCCTATAGTGGGGATGGCTGGCCTCGGAAAGACTACTATAGCAAAGAATGTT TATAAAGAAGTCAAGGAAAGAAAGCTTTTTGATGAAACAATATGGGTTTGTGTTTCTAATCATTTTGATGAAGTGAAGATTTTACGAGAAATGTTGCAAA CGATGGATAAAACTACGGGGGCGTTGGAGAATATTGATGCAATTCTTCAAAACCTCAAGAAACAGCTGGAAAATAAAACATTTCTTCTTGTTCTCGATGA TGTGTGGAATCGTAATCGTAATAAATGGAATGGTTTGATGGATGGGTTGTTAAAAATTAAAAGCAAAAATGGGAATGCTGTTGTTGTTACAACCCGCATT AAGGAAGTAGCAAGCATGATGGAGACTTCTCCTGGGATTCAGCTTGAGCCAGAAAAACTATCAGATGATGAATGCTGGTCCATTATCAAGCAAAAAGTGA GTGGGGGTGGAGGAGCACCATTAGCTGCAGACTCGGAATCTATTGGAAAAGAGATTGCAAAGAATGTGGGGGGGCTTCCATTGCTTGCTAATGTTTTGGG AGGAACACTGCGGCAAAAGGAGACAAAGGAGTGGGAGTCAATTCTAAGCAATAGATTTTGGCATTCCACCGATGGAAATGAAGCTTTGGATATATTGAGA TTCAGTTTTGATCACCTGTCATCTCCATCACTGAAAAAATGTTTTGCATACTGTTCCATTTTTCCTAAAGATTTTGAAATTGAAAGGGAAGAGCTAATTC AACTTTGGATGGGTGAAGGTTTTCTTGGGCCATCAAATCAGAGGATGGAAGACATGGGCAACAAGTATTTCAATGACTTGCTTGCAAACTCCCTTTTTCA AGATGTTGAAAGGAATGAGTATGGGATGGTAACAAGTTGCAAGATGCATGATCTTGTGCATGATCTTGCATTACAGGTCTCAAAAGCAGAAACGTTAAAT CCAGAGCCGGGTTCGGCTGTTGATGGTGCATCTCATATTCTTCATCTCAATCTCATTTCTTGTGGGGATGTTGAGTCAACATTTCAAGCGCTTGATGCTA GAAAGTTGCGTACTGTTTTCTCAATGGTTGATGTATTGAATCAGTCTAGGAAATTCAAAAGCTTGAGAACTCTCAAATTGCAACGGTCTAATATCACAGA ATTACCAGATTCAATTTGCAAGCTGGGACATTTGAGATATCTTGATGTCTCACATACCAATATCAAAGCATTACCAGAATCCATCACCAATCTCTACCTT TTCGAAACATTAAGACTCACTGATTGTTTCTGGCTACAAAAGCTTCCCAAGAAAATGAGAAATTTAGTTAGCTTGAGACACCTTCATTTTAATGATAAAA ACCTAGTGCCGGCTGATGTGAGCTTCTTAACACGTCTACAAACGTTGCCAATCTTTGTTGTGGGTCCAGATCATAAAATTGAAGAGCTGAGATGTTTGAA TGAGCTAAGAGGAGAATTGGAGATATGGTGTCTTGAGCGAGTGAGAGACAGAGAAGATGCCGAGAAGGCAAAACTGCGTGAAAAAAGAATGAACAAATTG GTGTTTAAATGGAGTGATGAAGGTAACAGCAGTGTTAACATCGAGGATGTGCTGGATGCTCTACAGCCTCACCCAGACATAAGAAGCTTAACAATTGAGG GTTACTGGGGTGAAAAGTTCCCATCATGGATGTCTATGTTGCAGCTCAATAATTTGATGGTGCTGAGATTGAAAGATTGCAGCAACTGCAGACAACTCCC AATACTCGGATGTTTTTCTCGCCTTGAGATTCTAGAGATGAGTGGAATGCCTAATGTGAAATGTATAGGCAATGAGTTCTATAGTAGTAGTGGCAGCACA GAAGTACTGTTTCCAGCACTAAAAGAACTCAGCCTGTTGGGTATGGATGGTCTTGAAGAATGGATGGTACCGTGTGGAGAAGGTGATCAAGTATTTCCTT GTCTTGAAAAGTTGAGCATTGAGTGGTGTGGCAAGTTGAGAAGCATTCCAAGCGTACAACACTGCACAACTCTGGTGAAATTGGATATAGATGGCTGCCT TGAGTTGATCTCAATTCCTGGTGATTTTCAAGAATTGAAATATTCTTTGAAGATATTGTCGATGTATAATTTGAAATTGGAAGCTCTTCCGAGCGGACTA CAATGTTGCGCATCTCTAGAGGAATTGTACATATGGGATTGCAGGGAGCTTATCCATATCAGTGATTTACAAGAATTGTCTTCGCTTCGAAGATTAGAGA TTAGAGGTTGTGATAAGATCAGCAGTATTGAATGGCATGGTTTACGACAATTACCTTCTCTTGTTTATTTAGAAATCAGTGGGTGTCGGAGTTTGAGTCA TTTCCCAGACGATGATTGCTTAGGCGGCCTCACCCAACTGAAGGAATTGGCCATTGGTGGTTTCTCAGAGGAGCTGGAGGCTTTTCCTGCAGGAGTTTTA AACTCATTCCAACACCTCAACTTGAGTGGATCCCTTGAAAGACTGGAGATATGTGGATGGGATAAACTGAAGAGCATACCACATCAACTCCAACACCTCA CTGCCCTTGAGAGATTGGAAATATGTGATTTCAGGGGAGAGGGATTTGAGGAAGCTTTGCCAGATTGGTTGGCCAACCTTTCTTCTCTTCGATATCTTGG GATTGATAATTGTAAGAATCTTAAGTATCTGCCAACCTCAACAGCCATTCAACGCCTCTCCAAACTGAAGGGATTGCGGATTTTGGGGGGATGTCCACAT CTCTCAGAAAATTGTAGAAAGGAGAACGGCTCTGAGTGGCCCAAGATTTCTCATATCCCAACAATCGATATAGTATAG
AA sequence Show only first row Show all	>Potri.018G135700.2 pacid=42801393 polypeptide=Potri.018G135700.2.p locus=Potri.018G135700 ID=Potri.018G135700.2.v4.1 annot-version=v4.1 MAAELLLTFAVEESLRRMISIAAEGIGLAWGLNGQLQNLVDSLTMIRAVLRDAATRPAPEDGVKRWLDKLQDGAHDAEDVLDEFDYEQKGKVCDFVSLHN PIVFRWKMCHKVKRIHGALDEILKLGGDLGLANRPEVRRDPPRQTDSFLDSSADTSAVVVGREDDVSKVVEWLTESQHVLSVVPIVGMAGLGKTTIAKNV YKEVKERKLFDETIWVCVSNHFDEVKILREMLQTMDKTTGALENIDAILQNLKKQLENKTFLLVLDDVWNRNRNKWNGLMDGLLKIKSKNGNAVVVTTRI KEVASMMETSPGIQLEPEKLSDDECWSIIKQKVSGGGGAPLAADSESIGKEIAKNVGGLPLLANVLGGTLRQKETKEWESILSNRFWHSTDGNEALDILR FSFDHLSSPSLKKCFAYCSIFPKDFEIEREELIQLWMGEGFLGPSNQRMEDMGNKYFNDLLANSLFQDVERNEYGMVTSCKMHDLVHDLALQVSKAETLN PEPGSAVDGASHILHLNLISCGDVESTFQALDARKLRTVFSMVDVLNQSRKFKSLRTLKLQRSNITELPDSICKLGHLRYLDVSHTNIKALPESITNLYL FETLRLTDCFWLQKLPKKMRNLVSLRHLHFNDKNLVPADVSFLTRLQTLPIFVVGPDHKIEELRCLNELRGELEIWCLERVRDREDAEKAKLREKRMNKL VFKWSDEGNSSVNIEDVLDALQPHPDIRSLTIEGYWGEKFPSWMSMLQLNNLMVLRLKDCSNCRQLPILGCFSRLEILEMSGMPNVKCIGNEFYSSSGST EVLFPALKELSLLGMDGLEEWMVPCGEGDQVFPCLEKLSIEWCGKLRSIPSVQHCTTLVKLDIDGCLELISIPGDFQELKYSLKILSMYNLKLEALPSGL QCCASLEELYIWDCRELIHISDLQELSSLRRLEIRGCDKISSIEWHGLRQLPSLVYLEISGCRSLSHFPDDDCLGGLTQLKELAIGGFSEELEAFPAGVL NSFQHLNLSGSLERLEICGWDKLKSIPHQLQHLTALERLEICDFRGEGFEEALPDWLANLSSLRYLGIDNCKNLKYLPTSTAIQRLSKLKGLRILGGCPH LSENCRKENGSEWPKISHIPTIDIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135700 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135800 [exp]	1.41	0.9216
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.006G271400 [exp]	2.44	0.8691
AT4G27220			NB-ARC domain-containing disea...		Potri.019G009198 [exp]	6.63	0.7985
AT5G36930			Disease resistance protein (TI...		Potri.006G269900 [exp]	9.16	0.7867
					Potri.019G026101 [exp]	9.53	0.8155
AT5G06810			Mitochondrial transcription te...		Potri.016G048200 [exp]	10.24	0.8277
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123500 [exp]	10.72	0.7793
AT3G01610		CDC48C, EMB1354	embryo defective 1354, cell di...		Potri.013G151600 [exp]	12.36	0.7935	CDC48.4
AT5G36930			Disease resistance protein (TI...		Potri.006G282900 [exp]	14.96	0.8119
					Potri.007G113400 [exp]	15.16	0.8028

Compare expression of checked genes

Potri.018G135700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.