Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27190 266 / 3e-73 NB-ARC domain-containing disease resistance protein (.1) AT4G27220 255 / 5e-70 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 230 / 5e-62 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 221 / 6e-59 RFL1 RPS5-like 1 (.1) AT4G26090 215 / 4e-57 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12280 214 / 1e-56 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 211 / 7e-56 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12290 209 / 3e-55 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G43740 208 / 7e-55 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G43730 207 / 7e-55 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G011169 [exp] 1480 / 0 AT4G27220 301 / 5e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G011826 [exp] 1469 / 0 AT4G27220 314 / 2e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.019G013140 [exp] 1092 / 0 AT4G27220 294 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.019G020500 [exp] 1068 / 0 AT4G27220 326 / 2e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G009198 [exp] 1020 / 0 AT4G27220 295 / 2e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145566 [exp] 1011 / 0 AT4G27220 348 / 7e-105 NB-ARC domain-containing disease resistance protein (.1) Potri.019G020102 [exp] 1008 / 0 AT4G27220 297 / 6e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.T045200 [exp] 1001 / 0 AT4G27220 348 / 1e-104 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 984 / 0 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039509 [exp] 132 / 2e-30 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 123 / 1e-27 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 117 / 5e-26 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 116 / 8e-26 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 116 / 9e-26 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 110 / 6e-25 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 111 / 3e-24 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 110 / 1e-23 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 110 / 1e-23 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 109 / 1e-23 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.018G145532.1 pacid=42800318 polypeptide=Potri.018G145532.1.p locus=Potri.018G145532 ID=Potri.018G145532.1.v4.1 annot-version=v4.1 ATGACGTGCAAGTTTTGTGGGCATTGTTTTACCCAAGGTACTTCCAGTAGGAGGATCAAATTGCATTTGGCTGGAGTGAGAGGGCGTGGTGTTAAAATTT GTAAAAATGTTCCACAAGAAGTTCGAGACGCAGCTTGTGAAGCAGTTAATGATAGCCCTCCAGAAAAGAAACTTGAAACTGCTGCAGGCTCAAGCACAAA CGAGGTCGCTAATGCAATTTCAGCTTCAACGCAAGAACAGAACATTGAAGTGACATATGTAGAGATGGCACTACAAGGAGGACCTTTTTTCACTAGAGAA CTTGCATGGGCAAATGATTTGAGAGGTAGCTCTCATGATTCATCCCGACCAGCAGATGATCAACTCTGTTCATCAGTAAACAATGATGTCAATATGAAAG ATGTGCAGAACAAGGTTGGAGTCAAGACAGAACCAGTACTGTTTCAAGTGGTGGAACAAAGCAATGCAGAACCTGTCAGTTTGGCAGGGCATGCTGGAAG TATACAAGTAGGAGTTCATGGCATGGAACAAGGTGCGGAGGAAGAGAGAATTTGCCCGAACTTAGCGGCAAATGGCATGGAAAACCCTTGTGATGGATCT AGTCAGCATTCCAGGAGACTCATAATTGATGCACAAGATAATACAAACTCTGCTTTTTTAATTAAGGAGGAGGATGTGGAGAACAATCTTGGAAGATTAG TGCAGCCCGGCGCAGGAGCTAGCTCTTCTGGAGGGGTTGCATGCAAAACAAATAAGATTAAAGGAGATGCATTACTAACGAGAAAAATGGTGGGTCAAGC ATTCAACGACCACAAGGAGACTATCCAATCTTTGTTGGAGCACAATGAAGTTTCAAGCATTGGCATCTATGGGATGGGCGGAGTGGGAAAGACCACATTG GTGACACACATTTATAATCAGCTTCTAGAAAGACGAGACACTCATGTTTACTGGATTACTGGTTCACAGGATACCAGCATTAATAGATTGCAGACAAGTC TCGCAAGACGTATTGGTTTAGATCTTTCCAGTGAAGATGAGGAGCTGCATAGAGCGGTCGCGTTGAAAAAAGAATTAATGAAGAAACAGAAATGGGTTCT GATTTTAGATGATTTGTGGAAGGCTTTTGACCTACAAAAGCTAGGAGTTCCTGACCAAGTTGAGGGATGCAAGCTGATTCTCACAACTCGATCAGAAAAG GTTTGTCAACAGATGAAAACCCAACACACGATCAAAGTGCAGCCTATTTCGGAGGAGGAGGCTTGGACCTTGTTTATTGAGAGACTTGGAGATGACATAG CACTTTCTTCAGAAGTGAAACGAATTGCTGTGGATATTGTAAGGGAATGTGCTGGTTTGCCATTGGGAATTATTACAATGGCAAGAAGCATGAGGGGAGT GGATGATCCATATGAGTGGACGGATACATTGAAGAAATTGAAAGAATCAAAATGTAGGGAAATGGAAGATGAGGTATTCCAGTTATTGAGGTTTAGTTAT GATCAGTTAAATGATTTAGCATTACAACAATGTCTCTTGTATTGTGCATTGTATCCTGAAGATCATGAGATTGAAAGGGAAGAGCTGATAGGTTATTTGA TCGATGAGGAAATAATTGAAGAAATGAGGAGCAGGCAAGCAGCATTTGACGAGGGACACATGATGCTTGATAAACTTGAAAAAGTCTGTTTATTGGAAAG AGTTGGTTATCGTAGATATGTCAAGATGCATGTTTTGATTAGGGGCATGGCCCACCAAATACTCCAAACGAACTCTCCAGTCATGGTTGGGGATTTTCGT GGAGGATTACCAGATGTGGATATGTGGAAAGAGAATCTAGTGAGAGTCTCTCTGAAGCATTGTTATTTCAAGGAAATTCTTTCTAGTCATTCACCAAGAT GTCCCAATCTTTCAACTTTATTGCTATGTGATAATGAAGGGTTGCAATTTATTACAGGTTCTTTTTTCACGCAATTGCATGGGCTCAAGGTTCTTGACCT GTCTCATACAAACATCACAAAATTGCCTAATTCTGTCTCTGAACTGGTGAGTCTCACTGCATTGTTGCTCAAAGAATGCAGAAATTTAAGGCATGTACCA TCATTAGAAAAGCTCAGAGCACTGAAGAGGTTAGATCTCTCTGGTACTCGGTCACTTGAAATGATGCCTCAAGGCATGCAATGTCTATCCAACCTGAGGT ATCTGAGGATGAATGGATGTGGTGAAAAGGAGTTTCCTCCTGGGATATTACCAAATCTTTCTCAACTGAAAGTCTTTATATTAGAGGAGATTGATTATGA CTACTTTCCAGTAACAGTTGAAGGAAAGGAAGTAGGATGCTTGTGGGAGTTGGAAAATTTGGAATGCTATTTTAAGGGTCAATCTGACTTTGTGGAGTAT CTCAATTCTCGGAATAAGATCCAATCACTAAGAAAATACCATATTTTCGTAGGATCACGGGATAAAGGTTGTGATCGTGAAATAGATGATGGTGAAATGA AGCTTGATTATGGCATAAGTAAAACAGTTTCGTTGGGTAATTTGCGTAACCAAGGAGATGGAGATTTTCAAGTCATGTTCCCAAAAGACATTCAACAACT GGTTATTTATGATTGTTCATGTGATGTTTCCTCTCTAATAGAGCATTCAACAGAACTGGAGGTCATCCACATTGAGGATTGCAGTAGCATGGAGAGCTTG ATTTCATCTTCTTGGTTCTACCCTTCTCCAACACCATTGCCATCTTATAATGGTGTATTTTCTGGTCTTAAAGTGTTCAATTGCTCTGGATGTAGTCGTA TGAAGGAGTTGTTCCCTCTTGTCTTGCTGCCAAACCTCGTAAACCTAGAAAAGATTACAGTTAGAGATTGTGAGAAGATGAAGGAGATAATAGGTGGAAC AAGATCAGATGAAAAAGGGGTTATGGGTGAAGAAAGCAACAACAACAGCTTTGGACTCAAATTGCCAAAGTTAAGAGAACTGACATTGAGGGGATTACCA GAACTGAAAAGCATTTCTAGTGCAAAACTGATTTGCGATTCCCTGGAATTAATTGAAGTATTGTATTGTGAGAAGCTGAAGAGGATGCCAATATGTCTTC CGTTGCTTGAAAATGGCCAGCCATCTCCTCCCCCTTCTCTTAGAAGAATTGAGATATGTCCAGAAGAATGGTGGGAGTCAGTAGTGGAGTGGGAGCATCC TAACACTACATATGTCCTTCGTCCCTTTGTAAAGGTTCAGGAGACGATATTGCCCCTTGATTTGGATATTGAATTTCGGGGCCGAAAAAGAAAGGGGATG GAAATGGTTATACAGAATGATCCATTTTGGGAATATGTTGAGAAGCTGGATGGTGGAAGTTTCAAGTGTACATTTTGTGCCTATAAATTTGCTACTGCTA CTTCTGTTTCGAGGATCAAATGGCATTTGGCAGGGCGTGGTGTTAAATTATGTGACAAAGTTCCTGAAGAAGTTCAAGATGCAGCCCGTGCAGCAATTGA TGGTCCTCCAGAAAAGAAACAAAAAGTTATAGCAGGTTCAAGCAATAACGATGGCAATAATGCAATTACAACTTCTGCACAAGAACAAAACTATGAAGGG AGACATGTAGAAATGGCACAACAAGGAGAAGCTTTTTCCCCTACAGCGCTCAAAGTTTGTTTGGATAGCATCGTTGATAAAGAGATTGAGTTTAGGCATG ATGCATCTGAGACTATACCGATAACCGAACAAGTGCAGAATCTGAAGAGAGGTAGCTCTCTTGAGAGGCCATCAATTAATCAAGCTGACGGGCCTCGAGG AGATTCATCCCCACCAAAGGATCTATCGTGTCTTGGCCTTGGAAGTTATCATGATCAACTCTGTTCTCCATCAGTAAAAAACGATGTCATGATGGATGAT GTGCAGAACATAGTTAGGGAGAAAACAGAGCCAGTAGCTAGTATGTTAGAGCAAAGCAATACAATACTTAATAAATTGGCAGGTGATGATGGAAGGATAC AGGTGGGAGTTCAGGGCAAGGAACAAGGTGCAGAGGAAGAGTTGATTTGTTCGCATCCAGAAGCGGAAAGTAGCATGGAATACACCTGTGAAGGATTTAT TCAGCAAATTGACAGAAATGTCTCCCCAGAACGAGCTAGATTAATGGAGAACAGTAGTGGAAGATTAGTGCAAACCGGCACAAGTGCTAGCTCTACAAAG CTAGTGGGTCAAGCATTTGAACAGAATATGAAGGTGATAAGGTCTTGGTTAATGGATGATGAAGTCTCAACTATTGGCATTTACGGAATGGGGGGAGTTG GTAAAACAACAATGCTGCAACAAATCTGTAATGAGCTTCTAGGAAGACCAGGCATTTCTCAAGATGTTTGCTCGGTGACTATATCTCAAGACTTTAATAT TAAAACATTGCAAAATCTCATTGCTAAACGTCTTGATTTAGATATTTCAAGCGAAGACGATGATAAGAGTAAAGCTGTCAAATTGGCAAAAGAACTAGAG AAGAAACAAAAATGGATTCTCATTTTAGATGATTTGTGGAACTCTTTTGAGCCACAAGAAGTGGGGATTCCTATCTCATTGAAAGGATCCAAGCTCATTA TGACAACTCGATCAGAAATGGTTTGTCGGCAGATGAATAGCCAAAACAATATAAGAGTGGATCCTCTTTCTGATGAAGAATCTTGGACTTTGTTCATGGA GAAGCTTGGACAAGACAAACCACTTTCTCCAGAAGTGGAACGAATTGCTGTAGATGTTGCAACGGAATGTGCTGGTTTGCCATTGGGAATTGTTACATTA GCAGAAAGTTTGAAGGGAGTGAATGACCTATTTGAGTGGAGGATTACATTGAAGAGATTGAAAGAATCAAATTTTTGGCACATGGAAGATCAGATATTCC AGATATTAAGATTGAGTTATGATTGTTTAGATGATGCAGCACAACAATGCTTCGCATATTGTGCATTATTTGATGAATGTCATAAGATTGAAAGGGAGGA GTTGATAAAGTCGTTTATCGAGGAGGGGATAATTAAAGAAATGAACAATGGCCACTCAATTCTTGATAGACTAGAAGATGTCTGCTTATTGGAAAGAATT GATGGTGGTAGTGCTGTTAAGATGCATGACTTGCTCAGGGACATGGCCTTGCACATACTGGATGAGTACTCTCTAATCATGGGCTAA
AA sequence Show only first row Show all	>Potri.018G145532.1 pacid=42800318 polypeptide=Potri.018G145532.1.p locus=Potri.018G145532 ID=Potri.018G145532.1.v4.1 annot-version=v4.1 MTCKFCGHCFTQGTSSRRIKLHLAGVRGRGVKICKNVPQEVRDAACEAVNDSPPEKKLETAAGSSTNEVANAISASTQEQNIEVTYVEMALQGGPFFTRE LAWANDLRGSSHDSSRPADDQLCSSVNNDVNMKDVQNKVGVKTEPVLFQVVEQSNAEPVSLAGHAGSIQVGVHGMEQGAEEERICPNLAANGMENPCDGS SQHSRRLIIDAQDNTNSAFLIKEEDVENNLGRLVQPGAGASSSGGVACKTNKIKGDALLTRKMVGQAFNDHKETIQSLLEHNEVSSIGIYGMGGVGKTTL VTHIYNQLLERRDTHVYWITGSQDTSINRLQTSLARRIGLDLSSEDEELHRAVALKKELMKKQKWVLILDDLWKAFDLQKLGVPDQVEGCKLILTTRSEK VCQQMKTQHTIKVQPISEEEAWTLFIERLGDDIALSSEVKRIAVDIVRECAGLPLGIITMARSMRGVDDPYEWTDTLKKLKESKCREMEDEVFQLLRFSY DQLNDLALQQCLLYCALYPEDHEIEREELIGYLIDEEIIEEMRSRQAAFDEGHMMLDKLEKVCLLERVGYRRYVKMHVLIRGMAHQILQTNSPVMVGDFR GGLPDVDMWKENLVRVSLKHCYFKEILSSHSPRCPNLSTLLLCDNEGLQFITGSFFTQLHGLKVLDLSHTNITKLPNSVSELVSLTALLLKECRNLRHVP SLEKLRALKRLDLSGTRSLEMMPQGMQCLSNLRYLRMNGCGEKEFPPGILPNLSQLKVFILEEIDYDYFPVTVEGKEVGCLWELENLECYFKGQSDFVEY LNSRNKIQSLRKYHIFVGSRDKGCDREIDDGEMKLDYGISKTVSLGNLRNQGDGDFQVMFPKDIQQLVIYDCSCDVSSLIEHSTELEVIHIEDCSSMESL ISSSWFYPSPTPLPSYNGVFSGLKVFNCSGCSRMKELFPLVLLPNLVNLEKITVRDCEKMKEIIGGTRSDEKGVMGEESNNNSFGLKLPKLRELTLRGLP ELKSISSAKLICDSLELIEVLYCEKLKRMPICLPLLENGQPSPPPSLRRIEICPEEWWESVVEWEHPNTTYVLRPFVKVQETILPLDLDIEFRGRKRKGM EMVIQNDPFWEYVEKLDGGSFKCTFCAYKFATATSVSRIKWHLAGRGVKLCDKVPEEVQDAARAAIDGPPEKKQKVIAGSSNNDGNNAITTSAQEQNYEG RHVEMAQQGEAFSPTALKVCLDSIVDKEIEFRHDASETIPITEQVQNLKRGSSLERPSINQADGPRGDSSPPKDLSCLGLGSYHDQLCSPSVKNDVMMDD VQNIVREKTEPVASMLEQSNTILNKLAGDDGRIQVGVQGKEQGAEEELICSHPEAESSMEYTCEGFIQQIDRNVSPERARLMENSSGRLVQTGTSASSTK LVGQAFEQNMKVIRSWLMDDEVSTIGIYGMGGVGKTTMLQQICNELLGRPGISQDVCSVTISQDFNIKTLQNLIAKRLDLDISSEDDDKSKAVKLAKELE KKQKWILILDDLWNSFEPQEVGIPISLKGSKLIMTTRSEMVCRQMNSQNNIRVDPLSDEESWTLFMEKLGQDKPLSPEVERIAVDVATECAGLPLGIVTL AESLKGVNDLFEWRITLKRLKESNFWHMEDQIFQILRLSYDCLDDAAQQCFAYCALFDECHKIEREELIKSFIEEGIIKEMNNGHSILDRLEDVCLLERI DGGSAVKMHDLLRDMALHILDEYSLIMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27190			NB-ARC domain-containing disea...		Potri.018G145532 [exp]	0	1
AT1G03370			C2 calcium/lipid-binding and G...		Potri.006G003200 [exp]	1.73	0.9118
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.004G141700 [exp]	3.16	0.8798
AT5G58720			smr (Small MutS Related) domai...		Potri.009G046300 [exp]	8.71	0.8445
AT4G27190			NB-ARC domain-containing disea...		Potri.019G036875 [exp]	8.94	0.8554
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	9.16	0.8531
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145530 [exp]	9.32	0.8723
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	10.67	0.8549
AT1G19850	ARF	IAA24, ARF5, MP	MONOPTEROS, indole-3-acetic ac...		Potri.002G024700 [exp]	10.77	0.8269
AT1G69550			disease resistance protein (TI...		Potri.004G088500 [exp]	11.22	0.8547
AT1G53440			Leucine-rich repeat transmembr...		Potri.001G386300 [exp]	12.00	0.8474

Compare expression of checked genes

Potri.018G145532 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.