Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13040 176 / 5e-50 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT2G01060 154 / 1e-43 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G13640 142 / 4e-39 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 142 / 1e-38 GARP Homeodomain-like superfamily protein (.1.2) AT3G04450 132 / 4e-34 GARP Homeodomain-like superfamily protein (.1.2) AT5G06800 127 / 9e-33 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G28610 128 / 1e-32 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT5G29000 127 / 1e-32 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT1G69580 125 / 4e-32 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 119 / 8e-30 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G000700 [exp] 198 / 2e-58 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 194 / 2e-56 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 154 / 3e-43 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 149 / 5e-41 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G314800 [exp] 141 / 2e-38 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.017G054800 [exp] 139 / 1e-37 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.013G048000 [exp] 137 / 1e-35 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.019G020900 [exp] 131 / 9e-34 AT5G29000 306 / 4e-101 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.006G101000 [exp] 127 / 1e-33 AT2G01060 179 / 2e-55 myb-like HTH transcriptional regulator family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028102 [exp] 190 / 5e-57 AT3G13040 155 / 6e-44 myb-like HTH transcriptional regulator family protein (.1.2) Lus10040569 [exp] 191 / 2e-56 AT3G13040 157 / 7e-44 myb-like HTH transcriptional regulator family protein (.1.2) Lus10040583 [exp] 191 / 4e-56 AT3G13040 155 / 9e-43 myb-like HTH transcriptional regulator family protein (.1.2) Lus10035705 [exp] 177 / 6e-50 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 170 / 2e-47 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 145 / 7e-40 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10016676 [exp] 139 / 2e-37 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10007132 [exp] 139 / 4e-37 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10008197 [exp] 132 / 7e-34 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10038734 [exp] 127 / 2e-33 AT2G01060 324 / 1e-111 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.018G151400.1 pacid=42800610 polypeptide=Potri.018G151400.1.p locus=Potri.018G151400 ID=Potri.018G151400.1.v4.1 annot-version=v4.1 ATGAAATTCTATAGTACTGTCAAGTCCTTTAATAGAAGGAAAGGGGCGATGCAAACCCATCCTTCTTCGTTGAATACTGAGTCAGTAGGCTTATATTGTT TAAATAAAAATCTCCAATATTCTGCTGTCCTGCCTGATTGCGTACAACCAAAACCACCCAATTCCCTCCCACAGGCATCCTTGTTCCTAACACGGACATT AAACGCGAGCCCTATCTTGAATGATGCTGTTTCTTATGGCTCCATTGGTCAACCTCGCAAAGGCACCATGTTCTCCGCCAGTTTACAACCATCACCTTTG ACAATTGCTGAGAGTGATCTCCAGCTTCCCACCTCACCTTTCCTTCAACGTCCTCTACCTGTCGATCATATCACTCCCCCTTCAGACTCTTTATTTCTTG GAGGACAAGATGTAATTACTGAGCCTGAAAACGAAAATTTGATGGGTGTCCTGGACGAGTGCTCTGGTGGGAGCTTTACAGGTTTGCACTGCACTAAGGA GAGTTTGACATCCACTGAGAAGCTTGTACTTCAATATTTGTCCAAGGAGCTTGAAATTCCCGTCGATGACGTCTCCCAAAATTCCACCCTCAATGAAGCA CAGCGAGTTTCATCGATCCCTGTCACTGAGTTGAATCATAAAGCAAACTATCGTTCGTCAGCTGCACAAATGGATGACAGCATTAACCGACTTCCTGAAG CTGCAACTTCACAAAAGCAAAGAATAAGATGGACGACTGAGCTTCATGACCTTTTTGTAGATGCAGTTAAATCCCTCGGAGGCCCTGATGTTGCAACTCC AAAAAGTATATTGGGTATTATGAATGTTAAGGGCTTAAGTATCTATCATGTCAAGAGCCATTTGCAGAAGTACCGCCTAGCTAAAAAATTTCCGGAGACA AATCATGACAAGAGCACTTCCACCGTGGTAGAGAATAAAGCAGCTTCATCGAACAGTAACAATGATGCACTTGTCATTGAGTCCAATAGAGACGTGCAAG TAACAGAGGCTTTGCGCACACAAATTGAAATTCAAAAGCTGCTGCATGAGCAGCTTAAGGCACAGAAAGAGCTTCAGATACGCATTGAGCAGAATGAAAA GTTCTTGCGGGAGTTAATGGAACAGAAAGCGATTTCGATCTATGAGCCATCATCATTTGCTGTCCCTGCCTCAGAACCCAAACTGCTGCCTCACTCTCCA TCTGCTGATGTTTCCTCACCAGGGCAAGCTGCAGTGAATAGTGATTGCTATTTATTCCAACCATCAAATCACAAAGACTCTGACGCTGTGGAATCTGAGA AGGCAAAATGTCCTAAACGGGATCGAGGACAAAAGGAACATCCGATCCTACACTAA
AA sequence Show only first row Show all	>Potri.018G151400.1 pacid=42800610 polypeptide=Potri.018G151400.1.p locus=Potri.018G151400 ID=Potri.018G151400.1.v4.1 annot-version=v4.1 MKFYSTVKSFNRRKGAMQTHPSSLNTESVGLYCLNKNLQYSAVLPDCVQPKPPNSLPQASLFLTRTLNASPILNDAVSYGSIGQPRKGTMFSASLQPSPL TIAESDLQLPTSPFLQRPLPVDHITPPSDSLFLGGQDVITEPENENLMGVLDECSGGSFTGLHCTKESLTSTEKLVLQYLSKELEIPVDDVSQNSTLNEA QRVSSIPVTELNHKANYRSSAAQMDDSINRLPEAATSQKQRIRWTTELHDLFVDAVKSLGGPDVATPKSILGIMNVKGLSIYHVKSHLQKYRLAKKFPET NHDKSTSTVVENKAASSNSNNDALVIESNRDVQVTEALRTQIEIQKLLHEQLKAQKELQIRIEQNEKFLRELMEQKAISIYEPSSFAVPASEPKLLPHSP SADVSSPGQAAVNSDCYLFQPSNHKDSDAVESEKAKCPKRDRGQKEHPILH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13040	GARP		myb-like HTH transcriptional r...		Potri.018G151400 [exp]	0	1
					Potri.012G124700 [exp]	4.12	0.9513
AT5G19760			Mitochondrial substrate carrie...		Potri.001G004366 [exp]	7.14	0.9721
					Potri.012G026150 [exp]	9.74	0.9664
AT2G06925		ATSPLA2-ALPHA, ...	PHOSPHOLIPASE A2-ALPHA, Phosph...		Potri.012G049101 [exp]	12.40	0.9588
					Potri.010G139766 [exp]	14.14	0.9635
					Potri.010G219950 [exp]	17.60	0.9609
AT3G08900		RGP3	reversibly glycosylated polype...		Potri.015G060300 [exp]	17.66	0.9249	RGP3.3
					Potri.019G068802 [exp]	18.57	0.8519
AT3G19230			Leucine-rich repeat (LRR) fami...		Potri.010G213101 [exp]	19.00	0.9500
AT4G10260			pfkB-like carbohydrate kinase ...		Potri.019G063600 [exp]	19.44	0.9563

Compare expression of checked genes

Potri.018G151400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.