Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 720 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 450 / 3e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 431 / 9e-131 transmembrane receptors;ATP binding (.1.2) AT4G12010 399 / 5e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 389 / 2e-119 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 392 / 1e-118 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 392 / 7e-116 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G46450 380 / 6e-114 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 379 / 5e-113 TAO1 target of AVRB operation1 (.1) AT5G41540 367 / 6e-110 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001602 [exp] 1924 / 0 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 771 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 743 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 736 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 734 / 0 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G099700 [exp] 729 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 712 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 697 / 0 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.002G056100 [exp] 693 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 630 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10039850 [exp] 578 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 576 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 543 / 4e-174 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011741 [exp] 529 / 7e-169 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 494 / 2e-154 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 483 / 2e-152 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 469 / 2e-145 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10033825 [exp] 423 / 2e-132 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10030839 [exp] 419 / 2e-127 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G001600.1 pacid=42773545 polypeptide=Potri.019G001600.1.p locus=Potri.019G001600 ID=Potri.019G001600.1.v4.1 annot-version=v4.1 ATGACATCATCATTTTCATCTGGGTCTTCGTCTTCGTCTTCATCTTCAAAACCATGGATTTATGATGTATTTTTGAGTTTTAGAGGCGAAGACACACGCA AAAATTTCACCGATCATCTCTACTTTGCTTTAAAAGATGCTGGAATCAACACATTTAGAGACGACAATGAGCTTCGAAGTGGTGAAGATATTTCGACGGA GCTATTACAAGCGATCCAAAAGTCTAGAATTTCAGTCATTCTTTTCTCAAGAAATTATGCAAATTCAAGATGGTGTCTTGAGGGATTAGTGAAGATCATG GAGTGTTGGAGAAGTTGGAGGCAACTTGTTTTTCCTATATTCTATGATGTTGATCCATCTGATGTAAGGAAACAAACTGGAAGTTTTGCAGAGGCCTTTT CTGGACATGAAGAAAGGTTTGTGCTCCAGACAGACAAGGGCAAGGTGGCGACATGGAGGATGGCTTTGACTGAAGCTGCAAATTTGTCTGGATGGGATTT GAGGAATGTTGCGGATGGGCATGAAGCAAAATTTATAAAGAAAATTGTTGGGGAGATTTCCAGGGAACTGAGCAGCACATACTTGTTCATAGCCTTCTAT CCAGTCGGGATAAACTCTCGTGTGCAACAATTGAACTTTTTATTAAATGCTGGATCAAACGAGGTCTGCATTGTAGGAATATGTGGAATGGGAGGCATAG GGAAAACAACCATTGCCAAGGCCATGTATTATGAGTTGTTTCATAGTTTTGATGGGAAATGTTTTCTTGCCAATGTTCGAGAAATTTCACAGCAGCCAAA TGGTCATGTCAAACTGCAAGAACAACTTCTTTTTGATATCCTGAAGACAGACAAGATTAAGATTGGCAATGTTGACAGAGGAATGAATATGATAAAGGAA AGACTTCACAGTAGAAAAGTCCTTCTCATACTGGATGATGTAGATAAATTAGATCAGTTACAAGCGATAGCGGGGAGTCGAGATTGGTTTGGTTCAGGAA GCAGAATCATTGTAACAACAAGAGATAAGCATGTTCTAACAGTTCTTGGAGCTGATCGAGTATACATGGCTAGAGAAATGAATGACATCGAAGCTTTGGA GCTCTTTAGTTGGCATGCCTTCCGAACAAGCCATCCCGTCGAAGATTATAAGGAGTTGTCAGAACAAATTGTTGACTACTGTGGAAGATTGCCACTAGCA CTTGAAGTAATAGGCTCTTTTCTATTTGGTAGAAGTATAGTTGAATGGAAAAGTGCATTGGAAAAACTGAGAAGAATTCCTGATGATCAAATTCAGAAAA AGCTCCAAATAAGTTTTGATGGCCTGAATGATGACACACAGAAAGATTTATTCCTCGATATATCATGTTTCTTTGTTGGGATGGACAAGGAATATGTGTT ACCAATATTAAATGGTTGTGATTTTTTTGCAGACATTGGACTTGGTGTCCTCACTCAGAGGTGCCTTGTATCTGTTAATGAAAAGAACAAGCTAATAATG CATGATTTGCTTCGAGATTTGGGGAGAGAAATTGTTCGTGCGCAATCACCGAACAATCCGGGAAGGCGGAGTAGATTATGGATTCGTGAAGAAGTTGCTG ACATTTTGAGAAGAAACATGGCAACTGAAGCAACCCAAGGGATGGCCATAAACTTGCTGAAAGGGAATGACATGAAAGTGGATTTAAATGTGTTTTGCAA TCTGCAAAACCTAAGGCTGCTCCAGCTCAATCATGTAAAGCTTGCTGGAGGCTGTGAATATCTTTTGAGAAAATTAACCTGGCTCTGCTGGCATGGATTT CCACTCTCGTTCATACCTGATGGCCTCTATGGGGAAAACCTTGTTGCTATAGATATGCGACACAGCAACCTAAGACAGGTTAAGAATTCTAAGTTCCTTT TGAAGTTGAAGTTTCTTAATCTCAGTCATTCTCATTACCTATATCGGACTCCCGACTTTTCCAGACTTCCACATCTGGAGAAGTTAAAACTCAAAGACTG CAGAAGTTTGGTTGAAGTTCATCATTCTATTGGATACCTTGATAGACTTGTTTTGGTAAATTTAAAAGATTGCAAGCAACTTAGGAGGCTCCCGAGTAGC TTCTGGAAGTCGAAGTCTATCGAGATTCTTTACCTCTCAGGCTGCTCAAAATTTGATGAATTGCCCGAGGACTTGGGAGATTTGGAATCCTTGACAATTC TCAATGCAGAAGACACTGCCATAAGACAAGTACCAAGTACCATAGTCAGATTGAAGAACCTCAAAGATTTATCACTTTGTGGTTGTAAAGGTTCAACTTC TGCAACATTTCCTTCACGTTTGAGGTCATGGTTTCTTCCAAGAAAAATTCCCAATCCAACCAACCTGTTGCCACCTTCCTTTCATGTCACATCATTGTCG CTCAGGGATTGCAATTTATCTGATGATGCGCTTCCTAGAGATCTTGGGAGCTTACCCTCACTAACCAATCTGGAATTGGACCGTAACAGTTTTCAAAGTC TACCAGCTGGCTTGTGTAGTCTTTTGAGACTTAAAAGTCTAACGTTGGACGATAACACAAGTCTACAAACAATTCCAGCTTTACCTAGAAATTTGGATGT ATTGCGCGCTTCGAACTGCACATCATTGGAAAGATTACCAGACATATCAGTAGCTTCACTTATGCGTTTGCTGTATATTGCTAATTGCCCCAAACTGATT GAGGCTCCAGGATTGGATAAATCAAGGTCCATTTCACACATTGACATGGAAGGGTGCTACGATATCTCAAATACTTTAAAAAATAGCTTGCACAAGGGAT GTATTTCTGGTATGGTACTTCCTGGAAATGAGATTCCTGCCTTGTTCAACTATAAGAATGAGGGTGCTTCAATATTGTTTAAACTACCTGAATTCGACGG CAGGAACTTGAATGGCATGAACGTGTGCATTGTTTGCTCATCTCATTTAGAGAAAGAAGAAACTAAACACATTAGAATCAAATTGACTAATTATACTAAG GGTTTTACCAAGAATTTTCGTGCTGTAGCAATTAACTTGGTAAAATCCTGCGAAGATCACCTTTGGCAAGGCCATATATCAAACAATTTTTTCAAACTTG GTAGTGAAGATGAAGTGGAACTTATTGTAGACTGTATGAACACAATGACTGTGAAGAAGACTGGAGTGTACTTGGTATATGAGCAAGATGAGGCAAGGCT TAAAGCTAAGAGAGGTCTTGATAGTGATGATGAGGCAGGATCAAGCTGTGATACTTCTAGCAAAAAGATTGAGAATTGA
AA sequence Show only first row Show all	>Potri.019G001600.1 pacid=42773545 polypeptide=Potri.019G001600.1.p locus=Potri.019G001600 ID=Potri.019G001600.1.v4.1 annot-version=v4.1 MTSSFSSGSSSSSSSSKPWIYDVFLSFRGEDTRKNFTDHLYFALKDAGINTFRDDNELRSGEDISTELLQAIQKSRISVILFSRNYANSRWCLEGLVKIM ECWRSWRQLVFPIFYDVDPSDVRKQTGSFAEAFSGHEERFVLQTDKGKVATWRMALTEAANLSGWDLRNVADGHEAKFIKKIVGEISRELSSTYLFIAFY PVGINSRVQQLNFLLNAGSNEVCIVGICGMGGIGKTTIAKAMYYELFHSFDGKCFLANVREISQQPNGHVKLQEQLLFDILKTDKIKIGNVDRGMNMIKE RLHSRKVLLILDDVDKLDQLQAIAGSRDWFGSGSRIIVTTRDKHVLTVLGADRVYMAREMNDIEALELFSWHAFRTSHPVEDYKELSEQIVDYCGRLPLA LEVIGSFLFGRSIVEWKSALEKLRRIPDDQIQKKLQISFDGLNDDTQKDLFLDISCFFVGMDKEYVLPILNGCDFFADIGLGVLTQRCLVSVNEKNKLIM HDLLRDLGREIVRAQSPNNPGRRSRLWIREEVADILRRNMATEATQGMAINLLKGNDMKVDLNVFCNLQNLRLLQLNHVKLAGGCEYLLRKLTWLCWHGF PLSFIPDGLYGENLVAIDMRHSNLRQVKNSKFLLKLKFLNLSHSHYLYRTPDFSRLPHLEKLKLKDCRSLVEVHHSIGYLDRLVLVNLKDCKQLRRLPSS FWKSKSIEILYLSGCSKFDELPEDLGDLESLTILNAEDTAIRQVPSTIVRLKNLKDLSLCGCKGSTSATFPSRLRSWFLPRKIPNPTNLLPPSFHVTSLS LRDCNLSDDALPRDLGSLPSLTNLELDRNSFQSLPAGLCSLLRLKSLTLDDNTSLQTIPALPRNLDVLRASNCTSLERLPDISVASLMRLLYIANCPKLI EAPGLDKSRSISHIDMEGCYDISNTLKNSLHKGCISGMVLPGNEIPALFNYKNEGASILFKLPEFDGRNLNGMNVCIVCSSHLEKEETKHIRIKLTNYTK GFTKNFRAVAINLVKSCEDHLWQGHISNNFFKLGSEDEVELIVDCMNTMTVKKTGVYLVYEQDEARLKAKRGLDSDDEAGSSCDTSSKKIEN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G001600 [exp]	0	1
AT3G50160			Plant protein of unknown funct...		Potri.001G333000 [exp]	1.00	0.8749
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.009G071700 [exp]	3.16	0.8322
AT3G54440			glycoside hydrolase family 2 p...		Potri.001G027400 [exp]	3.46	0.8472
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.005G077500 [exp]	3.46	0.8395
AT3G47570			Leucine-rich repeat protein ki...		Potri.016G114400 [exp]	6.24	0.8161
					Potri.017G019932 [exp]	12.48	0.8311
AT5G58003		CPL4	C-terminal domain phosphatase-...		Potri.018G108300 [exp]	13.41	0.8209
AT3G09010			Protein kinase superfamily pro...		Potri.011G049600 [exp]	17.14	0.7549
AT1G63500			Protein kinase protein with te...		Potri.003G126700 [exp]	17.20	0.8224
AT4G16700		PSD1	phosphatidylserine decarboxyla...		Potri.003G078300 [exp]	18.43	0.7576

Compare expression of checked genes

Potri.019G001600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.