Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 777 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 513 / 1e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 489 / 7e-152 transmembrane receptors;ATP binding (.1.2) AT5G18360 448 / 4e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 446 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 454 / 9e-138 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 447 / 1e-137 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 436 / 6e-134 TAO1 target of AVRB operation1 (.1) AT5G46450 431 / 1e-132 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 425 / 4e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001600 [exp] 1957 / 0 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 829 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 815 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 806 / 0 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 796 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 779 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G099700 [exp] 773 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 754 / 0 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 744 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039850 [exp] 647 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 640 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 638 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10005171 [exp] 598 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011104 [exp] 585 / 0 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 552 / 1e-178 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 538 / 8e-171 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 517 / 2e-163 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 489 / 3e-153 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10033825 [exp] 455 / 4e-144 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G001602.1 pacid=42773598 polypeptide=Potri.019G001602.1.p locus=Potri.019G001602 ID=Potri.019G001602.1.v4.1 annot-version=v4.1 ATGACATCTGCGTCTTCATCTTCACATTCATCTTCAAAACCGTGGATTTATGACGTGTTTTTGAGTTTTAGAGGCGAGGACACGCGCAAAAATTTCACCG ATCATCTCTACTTTGCCTTCAAAGATGCTGGAATCAACACATTTAGAGACGACAATGAGCTCCGAAGGGGTGAAGATATTTCGACGGAGCTATTACAAGC GATCCAAAAGTCTAGGATTTCAGTCATTGTGTTCTCAGAAAATTATGCAAATTCAAGATGGTGTCTTGAGGAACTAGTGAAGATCATGGAGTGTAGGAGA AGTTGTAGGCAACTTGTTTTTCCTATATTCTATGATGTTGATCCATCTGATGTAAGGAAACAAACTGGAAGTTTTGCCAAGGCCTTTGCTGGACATGAAG AAAGGTTTGTGCTCCAGACAGACAAGGGCAAGGTGGCGACATGGAGGATGGCTTTGACTGAAGCTGCAAATTTGTCTGGATGGGATTTGAGGAATGTTGC GGATGGGCATGAAGCAAAATTTATAAAGAAAATTGTTCGGGAGATTTCGAGAGAACTGAGTAGCACATACTTGTTCGTAGCCTTCTATCCAGTTGGGATA AATCCTCGTGTGCAACAATTGAACTTTTTGTTAAATGCTGGATCAAGCGAGGTCTGCATTGTAGGAATATATGGAATGGGAGGCATAGGGAAAACAACCA TTGCCAAGGCCATGTATAATGAGTTGTTTCATAGTTTTGATGGGAAATGTTTTCTTGCCAATGTCAGAGAAATTTCACAGCAGCCAGATGGTCATGTCAA ACTGCAAGAACAACTTCTTTTTGATATCCTGAAGACAGACAAGATTAAGATTGGCAATGTTGACAAAGGAATGAATATGATAAAGGAAAGACTTCACAGT AGAAAAGTTCTTCTCATACTCGATGATATAGATAAATTAGATCAGTTACAAGCGATAGCGGGGAGTCGAGATTGGTTTGGTTCAGGAAGCAGAATCATTG TAACAACAAGAGATAAGCATGTTCTAACAGTTCTTGGAGCTGATCGAGTATACATGGCCAGAGAAATGAATGACATTGAAGCTTTGGAGCTCTTTAGTTG GCATGCCTTTCGAACAAGCCATCCCGTCGAAGATTATAAGGAGTTGTCAGAACAAATTGTTGACTACTGTGGAAGATTGCCGCTAGCACTTGAAGTAATA GGCTCTTTTCTATTTGGTAGAAGTATAGTTGAATGGAAAAGTGCATTGGAAAAACTGAGAAGAATTCCTGATGATCAAATTCAGAAAAAGCTCCAAATAA GTTTTGATGGCCTGAATGATGACACACAGAAAGATATATTCCTCGATATATCCTGTTACTTTATTGGGATGTACAAGGAATATGTGTTACCAATATTAAA TGGTTGTGATTTTTTCGCAGACATTGGACTTAGTGTCCTCACTCAGAGGTGCCTTGTATCTGTTAATGAAAAGAACAAGCTAATAATGCATGATTTGCTT AGAGATATGGGGAGAGAAATTGTTCGTGCGCAATCACCGAACAATCCAGGAAGGCGGAGTAGATTATGGATTCCTGAAGAAGTTGGTGACATATTGAGAA GAAACATGGGAACTGAAGCAATCCAAGGGATGGCCATAAACTTGCTGAAAGTGAATGACATGAAAGTGGATGTAAATGTGTTTTGCAATCTGCAAAACCT AAGGCTGCTCCAGCTCAATCATGTAAAGCTTGCTGGAGGCTGTGAATATCTTTTGAGAAAATTAACCTGGCTCTGCTGGCATGGATTTCCACTCTCGTTC ATACCTGATGGCCTCTATGGGGAAAACCTCGTTGCTATAGATATGCGACACAGCAACCTAAGACAGGTTAAGAATTCTAAGTTCCTTTGGAAGTTGAAGT TTCTTAATCTCAGTCATTCTCATTACCTATCTCGGACTCCCGACTTTTCCAGACTTCCACATCTGGAGAAGTTAAAACTCAAAGACTGCAGAAGTTTGGT TGAAGTTCATAATTCTATTGGATACCTTGATAGACTTGTTTTGGTAAATTTAAAAGATTGCAAGCAACTTAGGAGGCTCCCGAGTAGCTTCTGGAAGTTG AAGTCTATCGAGATTCTTTACCTCTCAGGCTGCTCAAAATTTGATGAATTGCCCGAGGACTTGGGAGATTTGGAATCCTTGACAATTCTCCATGCAGATG ACACTGCCATAAGACAGGTACCAAGTACCATTGTCAGATTGAAGAAACTCCAAGATTTATCACTTTGTGGCTGTAAAGGTTCAACTTCCGCAACATTGCC TTCACGTTTGATGTCATGGTTTCTGCCAAGAAAAATTCCCAATCCAACCAACCTGTTGCCACCTTCCTTTCATGGCTTAGACAGACTCACATCATTATCG CTCAGGGGTTGCAATTTATCTGATGATGCGCTTCCAAAAGATCTTGGGACCTTACCCTCACTAACTAATCTGGAATTGGATCGTAACAGTTTTCAAAGTC TACCAGCTGGCTTGAGTAGTCTTTTGAGGCTTACAAGTCTAAGATTGGACGATAACACCAGGCTACAAACAATTCCAGCTTTACCTAGAAATTTGGATAC CTTGCGCGCTTCGAACTGCACATCATTGGAAAGATTACCAGACATATCAGTAGCTTCACGTATGCGTTTGCTGTATATTGCTAATTGCCCCAAACTGACT GAGGCTCCAGGATTGGATAAATCAAGGTCCATTTCACACATTGACATGGAAGGGTGCTACGATATCTCAAATACTTTAAGAAATAGCATGCACATGGGAT GTTTTTCTGGTTTGGTACTTCCTGGAAATGAGATTCCTGCCTTGTTCAACTATAAGAATGAGGGTGCTTCAATATTGTTTAAACTACCTGAATTCGACGG CAGGAACTTGAATGGCATGAACGTGTGCATTGTTTGCTCATCTCATTTAGAGAAAGAAGGAACTAAACAAATTAGAATCAAATTGACTAATTATACTAAG GGTTTTACCAAGAAGTTTCGTGCTGTAGCAGTTAACTTGGTAAAATCCTGCGAAGATCACCTTTGGCAAGGCCATATATCAAACAATTTTTTCAAACTTG GTAGTGAAGATGAAGTGGAGCTTATTGTAGACTGTATGAACACAATGACTGTGAAGAAGACCGGAGTATACCTAGTATATGAGCAAGATCAGGCAAGGCT TAAAGCTAAGAGAGGTCTTGATAGTGATGATGAGGCAGGATCAAGCTGTGATAACCTACTTCTAGCAAAAAGATTGAGAATGGAGACTAGTCCGCAGAAC ATTGAGGAAAACATGGATGTGGCATAG
AA sequence Show only first row Show all	>Potri.019G001602.1 pacid=42773598 polypeptide=Potri.019G001602.1.p locus=Potri.019G001602 ID=Potri.019G001602.1.v4.1 annot-version=v4.1 MTSASSSSHSSSKPWIYDVFLSFRGEDTRKNFTDHLYFAFKDAGINTFRDDNELRRGEDISTELLQAIQKSRISVIVFSENYANSRWCLEELVKIMECRR SCRQLVFPIFYDVDPSDVRKQTGSFAKAFAGHEERFVLQTDKGKVATWRMALTEAANLSGWDLRNVADGHEAKFIKKIVREISRELSSTYLFVAFYPVGI NPRVQQLNFLLNAGSSEVCIVGIYGMGGIGKTTIAKAMYNELFHSFDGKCFLANVREISQQPDGHVKLQEQLLFDILKTDKIKIGNVDKGMNMIKERLHS RKVLLILDDIDKLDQLQAIAGSRDWFGSGSRIIVTTRDKHVLTVLGADRVYMAREMNDIEALELFSWHAFRTSHPVEDYKELSEQIVDYCGRLPLALEVI GSFLFGRSIVEWKSALEKLRRIPDDQIQKKLQISFDGLNDDTQKDIFLDISCYFIGMYKEYVLPILNGCDFFADIGLSVLTQRCLVSVNEKNKLIMHDLL RDMGREIVRAQSPNNPGRRSRLWIPEEVGDILRRNMGTEAIQGMAINLLKVNDMKVDVNVFCNLQNLRLLQLNHVKLAGGCEYLLRKLTWLCWHGFPLSF IPDGLYGENLVAIDMRHSNLRQVKNSKFLWKLKFLNLSHSHYLSRTPDFSRLPHLEKLKLKDCRSLVEVHNSIGYLDRLVLVNLKDCKQLRRLPSSFWKL KSIEILYLSGCSKFDELPEDLGDLESLTILHADDTAIRQVPSTIVRLKKLQDLSLCGCKGSTSATLPSRLMSWFLPRKIPNPTNLLPPSFHGLDRLTSLS LRGCNLSDDALPKDLGTLPSLTNLELDRNSFQSLPAGLSSLLRLTSLRLDDNTRLQTIPALPRNLDTLRASNCTSLERLPDISVASRMRLLYIANCPKLT EAPGLDKSRSISHIDMEGCYDISNTLRNSMHMGCFSGLVLPGNEIPALFNYKNEGASILFKLPEFDGRNLNGMNVCIVCSSHLEKEGTKQIRIKLTNYTK GFTKKFRAVAVNLVKSCEDHLWQGHISNNFFKLGSEDEVELIVDCMNTMTVKKTGVYLVYEQDQARLKAKRGLDSDDEAGSSCDNLLLAKRLRMETSPQN IEENMDVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G001602 [exp]	0	1
AT1G78850			D-mannose binding lectin prote...		Potri.011G110000 [exp]	5.29	0.9712
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058500 [exp]	8.94	0.9454
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.008G079800 [exp]	9.64	0.9337	Pt-AS2.2
AT2G14820		MEL3, NPY2	NAKED PINS IN YUC MUTANTS 2, M...		Potri.009G089500 [exp]	10.67	0.9305
					Potri.017G019000 [exp]	12.68	0.9205
AT1G53440			Leucine-rich repeat transmembr...		Potri.016G012150 [exp]	13.78	0.9666
AT5G27550			P-loop containing nucleoside t...		Potri.005G030271 [exp]	14.28	0.9392
AT1G78940			Protein kinase protein with ad...		Potri.004G170901 [exp]	15.23	0.9404
					Potri.004G076300 [exp]	15.74	0.9047
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.007G140800 [exp]	16.94	0.9581

Compare expression of checked genes

Potri.019G001602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.