Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 425 / 1e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 348 / 1e-100 transmembrane receptors;ATP binding (.1.2) AT1G27180 327 / 5e-93 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G40910 319 / 6e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G48770 313 / 1e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 310 / 5e-89 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G69550 309 / 3e-87 disease resistance protein (TIR-NBS-LRR class) (.1) AT4G19510 298 / 6e-85 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G41540 296 / 3e-84 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 292 / 4e-83 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T009323 [exp] 1892 / 0 AT5G36930 449 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 552 / 4e-178 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 546 / 1e-175 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 546 / 2e-175 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 537 / 2e-174 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 541 / 8e-174 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 540 / 4e-173 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 536 / 1e-172 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 537 / 4e-172 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 437 / 5e-134 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10039850 [exp] 416 / 1e-125 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 414 / 2e-124 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 388 / 5e-116 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10041060 [exp] 353 / 5e-103 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011104 [exp] 345 / 2e-100 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 342 / 2e-99 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029722 [exp] 337 / 3e-98 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 322 / 5e-92 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 313 / 3e-89 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.019G001971.1 pacid=42773460 polypeptide=Potri.019G001971.1.p locus=Potri.019G001971 ID=Potri.019G001971.1.v4.1 annot-version=v4.1 ATGGCTTCCAAGCTCTTTTCGGCTGGCTCCTTCTCATCCTCTTCCTTGTCAACCGAATGTACCTATCATGTCTTTCTGAGCTTTAGAGGAGCAGATACTC GCAAAACCTTTTTAGGTCATCTTTATAATGCCTTAGTCCAAGCAGGAATCCATACCTTTAAAGACGATGAAGAACTTCCTCCTGGAGAAGAAATCTCCCA GCAACTCAAGAAGGCAATTCAAGAATCAAAAATTTCGATAGTGGTCTTCTCCAGAGACTATGCTTCATCTAGATGGTGTCTCAATGAACTCGTTGAGATT CTTGAGTGCAGAAACACAAAGGGCAGAACTGTTTTTCCTATATTCTGTGGTGTTGATCCTTCACATGTTCGTAAACAAGAAGGGAGTTTCAAAAAAGCTT TTAAGGCATATGAAAATAAAGAAGAAAAGGAGAAGATCAACAAGTGGAAAAACGCTCTTAAGGATGCTGCCAACCTCTCCGGGAAAGATATCTATAGTAC CGCAAATGGGGATGAATCAGTACTTATCAAAAAGATCGTCAAAGATGTGTTGAACAAATTGGATATCAAAAACTTAAATATACCAAAATACCTAGTAGGT ATTGATTCTTGTGTCGATGATATCATCAAGTCTCTTAATGCTTCAGATGATGTTAGCATGGTAGGCATACGTGGGATGCTAGGAATGGGGAAGACAACCA TAGCTAAAGTTGTGTACCAAAAACTCTTTCAGAAATTCGATGGAAGTTGTTTTCTCTTTGATGTCAATGAAAAATCAAAAGGTCCTGACAGCAAGGTTGA GTTACAAAAACAACTTATACGTGAAACTTTGGGAGTAAATATTTTGAAGAGAAAGAAAATTAGTGATGTTGATTCAGGAATTTCTTTGATTAAAGATTTA CTTGGTAACAAAAAAATTCTTCTAGTTCTTGATGGCATGGACCAACCGCAACAATTAGAAACTTTTGGCGATCGAAGTGTGTTCGCTAAGGGTAGTAAAA TAATCATCACCACTACAAATGAAAAATTGCTTGCTCAACTTAAAGTTGACAAAAAGCATTCGGTTGAAGAATGGGATGAAGAGATGTGCCTTGACCTTTT CAATTTCCATGCTTTTGAGGGAAAAACTCCGGAAGAAGAATTGGCGGAGCTTTCAAAAGTAGTGGTTGAGCAAAGTGGAAAACTTCCTTCAGTTCTCGTA GTTTTGGGGAATCGCTTTTCTCAAATAAGTGAACGTGATGAATGGGAAAAGGAAATTTATGAATTGCGTAAACTTCCTGATCCAATCCATTCCAAGCTTA AAGGAAGTTATGACTCACTAGAAGATGATTTGAAGAGCATATTTCTTGATATTGCGTGTTTTTTTGTTGGAGAAGATGCAGATTTTGTAGCTTCAATACT TGGAGGTCGTTATGGTTATTGCAATAATCTTAGAAGCCGAATCCAATCTCTGGAAGAAAGATCTCTCATAACAATTCATTTCGACGATACCATAATGATG AATGATCTGGTACAGAAAATGGGAAGGGAGATTGTTCGTCAAACTTCACATAAATATCCTGGAAAACACAGCAGAATCTGGGATCACGAGGATGCATTGG ATGTGCTCATCAACCACATGGGCACAGAATCTGTGGAGGGTCTCACCCTTGATGAATTTGATGAGGACATCATGCAAACTGGAACAGAAGATGAGGAGGG TCTGGGAACAGAGGATGAGGAGGGTCTGGGAACAGAGGATGAGGAGGGTCGCACCCTTGATGTGCAAGCATCAAAATTCTTAACTCTGAGGACAGAATAC TTTAAAGAGATGAGATTTTTACAATTACTTCGGATTGATGCCGTGCATCTTACTGGGTCCTTCAAAAATTTTCCCAAAGGGTTGATATGGCTTTCTTGGA AAGGATTTACTTTAAATTCTTTACCACTGGATTTTCATCTAGACAACCTCATTGTTCTTGAACTGCAATACAGTTATAACATCAAAGAATTGAAGGTTCT GAACAAGCTAAAAACCCTCAACCTCAGCTATTCCAAGTTTACTAAAACACCAAACTTGCTAGGACTCCCATGTTTAGAGGAATTAATACTTGAAGATTGT GAGAGATTAGTTGAAGTGCATGAATCTATTTGCCTATTGAAGAGACTTGTTTCCTTGAATTTGAACCAATGTTCGAGACTTAAATCGCTTCCTTCTGGCA TTAGTGGGCTTTCGAAGCTGGAGAGTTTGCTGGTTGAGGACTGCACAGATCTTCGATCAATCTCAGAGCTTCCCTCGAGTTTAGAGACATTGGATGCGGA CGGCTGTGAAAAATTAACAGAGATTCAGGGCATTGAAGATGTTTCTGACTGTAACTTTTCTTTATTGGGCAGCAACAGTTTGTCAAAAAAATTTAAGAAG AGTCTTGCTGAGGCATTGTGCAAGCGTTATGAGTATTCGATTTGCTTGGATGGTGGTTCTTTACCAGAATGGTTCATCAGCAATCCTGAAGAAGGTTATT CGTTATCATTTCAGGCACCCCCATCTGCAGATTCGGATGGTGAAGTCCGACTGGTTATTTGGGTTGTCTGTGCTTGCGAGATTGAATCCGCAGAGTGTGA GCTTGGTATCAAAATCTCAACAGACGATGGTTTTCGGTTGCTTAAAGATTCCATATCTCCTAAGAGTGATAACTGTTCGTGGATAAAATATATAGTGTTG GAAGGTATAGAAGCTGGAGATCAATTGGAACTGTCTATGGAAATAATAGAGGGTGACAATTTTGTACAAGTAAAAGAGCTTGGGTTCTATCTGATTGAAG AGAAGCCAAATGTTGAAGAGGGCAATGGGGAAAGCCGAGAAACTGCACCCAAGGGAAAACCAAATGTTGATGAGCCGAATGACAGGCGAACAATAGCATA TTCCGCTATTGATGATAAAGAGGAGGACAGTGACGTCCAGGAAACATTCCTGAAAAAGCTGTTTGTTGAGGAAAGCGATGACAGCGAAGCTACATCCTCT ATTGATGATGAAGAGGAGAATGGAAGTGACGGCCAAGAAACAGCCAAAGAAAAGCCAAATGTTAAGAGGCGGGATTACAGGCAAAGAATGGCATCCTCTA TTGATGATGTAGAGGAAGATGGCAACGACGGCCGAGAAACAGCCCACGGAAAACCAGATGTTGAAGAGGAGGATGAAGATCGCAAAGGCAGTGTCAATCA AGGAACAACATTGCATATTTATAATGAGCGGTGGAATAATTATTTAAGAAAGGAGTTGCCAAAATGGGATATCTTGGAATTTGCTGTATGCAGCGAATAC ACAGCATCCTTGAATGATGATGAAGACTGGGATGATGATGACAGCGACAGCGAAAGCGAGGGAAGGTCATCAGTAATTAACTTCTGA
AA sequence Show only first row Show all	>Potri.019G001971.1 pacid=42773460 polypeptide=Potri.019G001971.1.p locus=Potri.019G001971 ID=Potri.019G001971.1.v4.1 annot-version=v4.1 MASKLFSAGSFSSSSLSTECTYHVFLSFRGADTRKTFLGHLYNALVQAGIHTFKDDEELPPGEEISQQLKKAIQESKISIVVFSRDYASSRWCLNELVEI LECRNTKGRTVFPIFCGVDPSHVRKQEGSFKKAFKAYENKEEKEKINKWKNALKDAANLSGKDIYSTANGDESVLIKKIVKDVLNKLDIKNLNIPKYLVG IDSCVDDIIKSLNASDDVSMVGIRGMLGMGKTTIAKVVYQKLFQKFDGSCFLFDVNEKSKGPDSKVELQKQLIRETLGVNILKRKKISDVDSGISLIKDL LGNKKILLVLDGMDQPQQLETFGDRSVFAKGSKIIITTTNEKLLAQLKVDKKHSVEEWDEEMCLDLFNFHAFEGKTPEEELAELSKVVVEQSGKLPSVLV VLGNRFSQISERDEWEKEIYELRKLPDPIHSKLKGSYDSLEDDLKSIFLDIACFFVGEDADFVASILGGRYGYCNNLRSRIQSLEERSLITIHFDDTIMM NDLVQKMGREIVRQTSHKYPGKHSRIWDHEDALDVLINHMGTESVEGLTLDEFDEDIMQTGTEDEEGLGTEDEEGLGTEDEEGRTLDVQASKFLTLRTEY FKEMRFLQLLRIDAVHLTGSFKNFPKGLIWLSWKGFTLNSLPLDFHLDNLIVLELQYSYNIKELKVLNKLKTLNLSYSKFTKTPNLLGLPCLEELILEDC ERLVEVHESICLLKRLVSLNLNQCSRLKSLPSGISGLSKLESLLVEDCTDLRSISELPSSLETLDADGCEKLTEIQGIEDVSDCNFSLLGSNSLSKKFKK SLAEALCKRYEYSICLDGGSLPEWFISNPEEGYSLSFQAPPSADSDGEVRLVIWVVCACEIESAECELGIKISTDDGFRLLKDSISPKSDNCSWIKYIVL EGIEAGDQLELSMEIIEGDNFVQVKELGFYLIEEKPNVEEGNGESRETAPKGKPNVDEPNDRRTIAYSAIDDKEEDSDVQETFLKKLFVEESDDSEATSS IDDEEENGSDGQETAKEKPNVKRRDYRQRMASSIDDVEEDGNDGRETAHGKPDVEEEDEDRKGSVNQGTTLHIYNERWNNYLRKELPKWDILEFAVCSEY TASLNDDEDWDDDDSDSESEGRSSVINF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G001971 [exp]	0	1
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Potri.003G132700 [exp]	3.74	0.9509
AT1G52540			Protein kinase superfamily pro...		Potri.012G132200 [exp]	7.74	0.9471
AT3G63520		ATNCED1, ATCCD1...	carotenoid cleavage dioxygenas...		Potri.018G042650 [exp]	11.18	0.9349
AT1G07160			Protein phosphatase 2C family ...		Potri.019G071600 [exp]	11.48	0.9356
AT2G45360			Protein of unknown function (D...		Potri.014G068900 [exp]	15.68	0.9301
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.001G270300 [exp]	18.46	0.9179
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.001G228200 [exp]	22.97	0.9285
AT5G15130	WRKY	ATWRKY72, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.017G079500 [exp]	26.83	0.9260	Pt-WRKY72.1
AT1G03055			unknown protein		Potri.002G046500 [exp]	29.39	0.9260
AT5G66420			unknown protein		Potri.005G120100 [exp]	29.51	0.9164

Compare expression of checked genes

Potri.019G001971 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.