Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 587 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 581 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G12010 550 / 4e-175 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 481 / 9e-152 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 478 / 3e-149 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 466 / 5e-147 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27170 473 / 6e-145 transmembrane receptors;ATP binding (.1.2) AT5G46450 457 / 4e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G08450 458 / 1e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G22690 451 / 3e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G307300 [exp] 1674 / 0 AT5G17680 597 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 737 / 0 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.013G098550 [exp] 724 / 0 AT5G17680 593 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G001602 [exp] 717 / 0 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G097300 [exp] 714 / 0 AT5G17680 598 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069200 [exp] 707 / 0 AT5G17680 590 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G105201 [exp] 702 / 0 AT4G12010 549 / 4e-174 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.019G001600 [exp] 701 / 0 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G104901 [exp] 697 / 0 AT5G17680 536 / 2e-167 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011104 [exp] 613 / 0 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 599 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10029722 [exp] 598 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10018616 [exp] 590 / 0 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 575 / 0 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005171 [exp] 562 / 3e-180 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10041060 [exp] 563 / 1e-179 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 522 / 1e-164 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10019708 [exp] 491 / 5e-150 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10011741 [exp] 473 / 2e-146 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G002500.2 pacid=42774580 polypeptide=Potri.019G002500.2.p locus=Potri.019G002500 ID=Potri.019G002500.2.v4.1 annot-version=v4.1 ATGGCTTCTTCCTCTAACAGCACAAATTGTTGGAAGTACAGTGTCTTCTTGAGTTTCAGGGGCCAAGAGACCCGCAATACTTTTACTGCCCATCTATATC ATGCTCTGTGCAACAAAGGAATTAATGCTTTCATTGATGACAAGCTTGAGAGGGGAGAACACATTACTTCTCAACTCAACCAAATTATTGAAGACTCGAG AATCTCCCTTGTCATATTCTCTGAAAACTATGCAAGGTCTATTTATTGTCTGGATGAGCTGGTGAAGATACTTGAATGTAAAGAATCAAAGGGGCAAGTT GTTTTGCCTGTGTTTTATAATGTGGATCCTTCAGATGTGGAAGAACAAAAGGGTAGTTTTGGAGAATCCCTGGATTTCCATGAAACTTATTTGGGGATTA ATGCAGAGCAGCTCAAGCAATGGAGAGAAGCTCTAACAAAAGCAGCTCAATTGTCAGGGTGGCATTTAGACAGGGGGAATGAGGCTGTTTTTATTCGGAA AATTGTTGAAGAAGTATGGGCACAATTGAACCACACATCCTTACATGTTGCGGCATACCAAGTTGGATTGGATCAACGTATTGAAGAACTCATTCATATG CTAAATATAGGGTCAAGTAATGTGTGTATGGTAGGAATCTGTGGACTTGGTGGAAGTGGTAAGACAACTGTTGCCAAAGCTGTTTACAACCTAATTAATA ATCAATTTGAAGCTTGTTGCTTTCTTTCAAATGTTAGAGAATTCTCAAAGCGATATGGTCTTGTTCATTTGCAAGAGAAACTTCTTTTTGAGATTCTAGG GGATAAAACTTTAGTACTTGGAAGTGTTGATAGAGGAATTAATGTTATAAAGGATAGGCTTCGCCATAAAAAGGTGCTTATAGTCATTGATGATGTTGAT CATTTGGACCAACTCAAACAAATAGCTGGAGAGCGAGATTGGTTTGGCTTGGGAAGCAAAATTATCATAACAACTAGAGATGAACGTTTGCTAGTTTTTC ACGGGGTGGAACGCTTACTTAGGGTGAAGGAATTATGTTGTGATGATGCTCTTATGCTTTTCTGTTGGCATGCCTTCAGAAATTCTCATCCTCCTATAGA TTATTTGGAGATCTCAGATCAAGTAGTGAAATATTCCAAAGGCCTACCATTGGCTCTAGTTGTACTGGGTTCTTTTTTGTATGGAAGAAGCATACCTGAA TGGGAAAGCGAATTGGATAAACTAAGAAGGATTCCTAATAAACAAATTTACGAAGTACTCAAAATAAGCTTTGATGGACTGGAGCATCATGAGAGGGCTA TTTTTCTTGATATTGCCTGCTTCTTCAAAGGACAAGAAAAAGATTATGTCATAAAAATATTAGACGCGTGCGATTTCGACCCTGTTATTGGCATACAGGT TCTCATGGAGAAGTCTCTTGTATATATTGAAAACAATAAGCTGCAGATGCATGACTTGCTACAATGGATGGGCAGACAAGTTGTTCACCAAGAATCTCCC AACGTACCTGGAAGACGGAGCAGACTGTGGTTTCATGAGGATATTCTTCATGTGCTGACTGAAAATATGGGATCATATGAAGTTGAAGGCCTTATGCTGG ACTTGCCTGAAGCAGAAGAGGTACACTTGAGTGCTAAAGCTTTCAAAAAGATGAAAAGGCTCAGGATACTTATTGTCCACAATGCACAAGTTATTGGAGG TCCAGAAAATCTACCCAACGCATTAAGATGGCTTGAATGGCCTGGTTGCCCCTTGGAGTCGATGCCATCCACATTTCATGCAAGGAAACTTGTAGTTCTT AACATGCATCACAGTTGCATCAAACAGTTAGGGGAGGGATTCAAGAATTACACAACCTTAAAGTACATAGATTTCAGAGATTGTGAATTTTTGACAGAAA CACCTGACTTCTCAACCATCCCTAATCTTGAGAGGTTGAATCTTGAAGGTTGTACAAGTTTAGTTAAGATTCACAATTCGGTTGGATATCTTGCGAAACT TGTATTTTTGAGCGTTGAGTTCTGCTCCAACCTTAAGAGTATTTCAAGCCATTTCCGATTAAGATCCCTTCAGACTCTCCTTCTCACTGGTTGCTCAAAA CTTGAGAAATTCCCAGACATTGAGGACAAAATGGCTTGTATAGAGAGAGTTTCTTTGAATAGTACTGCTATAAAAGAGCTCCCTTTATCGATTGAAAATC TTGTTGGGCTTAAAGTCATGACTTTATCATTTTGCAGAAATCTATCGAGAATTCCAAGTAGCATTTATAAGTTGCAGCATCTTAAGCGTCTGCTTCTTGA TGGGTGCTCAGAACTTACCACGTTTCCAGAGAATATGCCGGAAGAAACACCGCCATTCTGCTCCAACATTTCCATGATAGCAAACAATGACATAATGTGG TTTCCCATGTTAACCTGTTTGGATCTACAAAATTGCAAGTTATCAGAAGTTGATTTCCTCATGAATCTTGTTTGCTTTTCCACGTTGAAGGATCTAGATC TATCAGGGAACAATTTTGTTAACCTTCCTACGTGCATCAACAGATTTACTAAATTGAGGCGCCTTGAATTGGCAAACTGCATATGGCTTGAAGGGATTCC GGAGCTCCCACGAAGTATTAAGCGTATTGGAGCCCGGAATTGCACATCATTGGAAAGTTATTCAGAATTAGTACGGGTATTTATGTTTAATACAGAAGAT AGATCAACAAAGCTTCATGATCTTGACTTTTCTAACTGCCATAAACTGGCAGATCAGAATCCATTACAGAGTTTTGCAGATACATCATCAAGATGCATAT CAGTGGACGAGCAGGGGTTCCGTGAGGACTTCAGAATTGAAGTTGTTCTTCCAGGAAATGAGATTCCAAGGTGGTTCAGCATTTACAGTGATGACGGGTA CATGTCATTCAAAGTGCCTTCGCCTACGTTCAGGAGAACAAAAGCCTTGGTTCTCTGTGCCATTTTAAGATTACAGTTTGCAGTGGATGTGAATATTTCC CGAGAAATTTTCATTAATGGTCGGAGCGTGATTTCCTTTTCTAGACAGTTCTTTTCTTTGAAGTCAGATCACATGTGGCTTTACTACATTCCATGTCGTA AGATTCGGAGCTTATATTCATTGCTGCAGGACGACTGGATTCACATTGAGGTTTCTTTCAGAATCCTTGGAGCACCAAGAAATGCAACCCTTAAAGGGTG TGGGGTTTATCTCATAAATGCAAGTCATCCAAGCTCTATTGTAGGCGATGAAGACGACGACACATGTCTGAGTGCTCGCAACGACGGAATCAACTTCTGT GGATCGGAGACTTGTACTTCACTATCACTTGATCTAATGAGAAGCTGCAGTGTCAGTGATGCTGGGGAATTCGAGAGGCACCCATGGCAGCCATCGCCTC AATGGAAACTCCCACCTACTCAACCAGGCTTGATTGTGATCCCACCTGGGAGCATTTACTCTCCAATAGCTCAGCTAATTCACCAGAACTCTTTTAGCCG ATCTAGGGATCCTATTAGCAAGAAAAGGGATCGGGAGCTCGGTGAAGATCATGATTCCTCTATTCCTGAAACAAGTACCAAAAGGTTCCAAAACTCTTCG TGCTTTCCACTAGGTAATAATAACGTTCCTCGGGGATCAAGCCAGCAATGA
AA sequence Show only first row Show all	>Potri.019G002500.2 pacid=42774580 polypeptide=Potri.019G002500.2.p locus=Potri.019G002500 ID=Potri.019G002500.2.v4.1 annot-version=v4.1 MASSSNSTNCWKYSVFLSFRGQETRNTFTAHLYHALCNKGINAFIDDKLERGEHITSQLNQIIEDSRISLVIFSENYARSIYCLDELVKILECKESKGQV VLPVFYNVDPSDVEEQKGSFGESLDFHETYLGINAEQLKQWREALTKAAQLSGWHLDRGNEAVFIRKIVEEVWAQLNHTSLHVAAYQVGLDQRIEELIHM LNIGSSNVCMVGICGLGGSGKTTVAKAVYNLINNQFEACCFLSNVREFSKRYGLVHLQEKLLFEILGDKTLVLGSVDRGINVIKDRLRHKKVLIVIDDVD HLDQLKQIAGERDWFGLGSKIIITTRDERLLVFHGVERLLRVKELCCDDALMLFCWHAFRNSHPPIDYLEISDQVVKYSKGLPLALVVLGSFLYGRSIPE WESELDKLRRIPNKQIYEVLKISFDGLEHHERAIFLDIACFFKGQEKDYVIKILDACDFDPVIGIQVLMEKSLVYIENNKLQMHDLLQWMGRQVVHQESP NVPGRRSRLWFHEDILHVLTENMGSYEVEGLMLDLPEAEEVHLSAKAFKKMKRLRILIVHNAQVIGGPENLPNALRWLEWPGCPLESMPSTFHARKLVVL NMHHSCIKQLGEGFKNYTTLKYIDFRDCEFLTETPDFSTIPNLERLNLEGCTSLVKIHNSVGYLAKLVFLSVEFCSNLKSISSHFRLRSLQTLLLTGCSK LEKFPDIEDKMACIERVSLNSTAIKELPLSIENLVGLKVMTLSFCRNLSRIPSSIYKLQHLKRLLLDGCSELTTFPENMPEETPPFCSNISMIANNDIMW FPMLTCLDLQNCKLSEVDFLMNLVCFSTLKDLDLSGNNFVNLPTCINRFTKLRRLELANCIWLEGIPELPRSIKRIGARNCTSLESYSELVRVFMFNTED RSTKLHDLDFSNCHKLADQNPLQSFADTSSRCISVDEQGFREDFRIEVVLPGNEIPRWFSIYSDDGYMSFKVPSPTFRRTKALVLCAILRLQFAVDVNIS REIFINGRSVISFSRQFFSLKSDHMWLYYIPCRKIRSLYSLLQDDWIHIEVSFRILGAPRNATLKGCGVYLINASHPSSIVGDEDDDTCLSARNDGINFC GSETCTSLSLDLMRSCSVSDAGEFERHPWQPSPQWKLPPTQPGLIVIPPGSIYSPIAQLIHQNSFSRSRDPISKKRDRELGEDHDSSIPETSTKRFQNSS CFPLGNNNVPRGSSQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G002500 [exp]	0	1
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.011G144500 [exp]	4.00	0.7806
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G087100 [exp]	7.87	0.8195
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136501 [exp]	10.24	0.7809
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G137000 [exp]	14.28	0.7554
AT4G34440		AtPERK5	proline-rich extensin-like rec...		Potri.004G153600 [exp]	15.81	0.7301
AT5G27550			P-loop containing nucleoside t...		Potri.005G031850 [exp]	17.43	0.7650
AT5G18960	FAR1_related	FRS12	FAR1-related sequence 12 (.1)		Potri.016G059150 [exp]	18.30	0.7742
AT4G30110		ATHMA2, HMA2	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G076900 [exp]	18.33	0.7270
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.006G262100 [exp]	18.73	0.7542
					Potri.012G106675 [exp]	20.66	0.7694

Compare expression of checked genes

Potri.019G002500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.