Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 639 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 459 / 2e-140 transmembrane receptors;ATP binding (.1.2) AT5G17680 454 / 4e-139 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 439 / 5e-132 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 417 / 6e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 409 / 2e-123 TAO1 target of AVRB operation1 (.1) AT5G46260 405 / 5e-122 disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 402 / 2e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 399 / 2e-121 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46270 402 / 4e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005501 [exp] 1946 / 0 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 1905 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 1078 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 959 / 0 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 900 / 0 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 884 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 884 / 0 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 883 / 0 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 882 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 585 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011104 [exp] 574 / 0 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10039850 [exp] 572 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 568 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 565 / 3e-180 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 512 / 2e-160 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 499 / 5e-158 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 466 / 2e-143 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10019708 [exp] 436 / 2e-130 AT5G17680 495 / 1e-150 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 419 / 6e-127 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G003285.1 pacid=42774306 polypeptide=Potri.019G003285.1.p locus=Potri.019G003285 ID=Potri.019G003285.1.v4.1 annot-version=v4.1 ATGGCTTCCACGGACTCTGAGTCTCCGTTCTCTTCTTCGTCTTCATCCTCTGGACATAGATGGAACTATGATGTTTTTCTAAGTTTTAGAGGAGAAGATA CCCGCAAGAACTTTACAGATCATCTCTATACCGCCTTAATCCAGGCCGGAATTCATACTTTTAGGGATGATAATGAACTTCCTAGAGGAGAAGAAATCTC TCCACAACTTCTCAAGGCAATCGAAGGATCAAGGATTTCTATAGTGGTCTTCTCCAAACACTACGCTTCCTCTAGATGGTGTCTTGACGAACTTGTAAAG ATTCTTGAGTGCAGGCAAAACATTGACCAGGTTGTTCTTCCTATATTCTATGATACGGAGCCTTCAGATGTCCGAAAACAGACCGGGAGTTATGCAAAAG CTTTTGATGAACATGAAGAACGCTTCAAGGAAGAAATGGAGAAGGTCAACAAGTGGAGAGGAGCTCTTGCAGAAGCGGGAAATCTATCTGGATGGGGTTT ACACAATGAGGCAAATGGATATGAAGCGGAATTCATCAAAAGGATTGTCAGTGATGTAGCTTGTAAACTGGGAAACAAAACCTTGCACGTAGCCAAGCAC CCAGTAGGTATTTATTCCAGAGTTCAGGGTATTATTTCTTTGCTAAAAGGTGCAAAACCGGATGTTGGCATCGTGGGAATACATGGGATAGCTGGAATAG GAAAGACAACAATAGCAAAAGCTGTGTTTAACAAACTTTATTTTGGATTTGAGGGAAGCAGTTTTCTTTCGGACGTCAAGGAAATATCAGATAAGCCGAA TGGTCTGGTTGAATTACAAGAGCGCCTTCTTCATGATATTCTGAAACCAAGAGTTTGGAAGGTCAGTAATGTTTATGAAGGCATGAATTTGATCAAAGAA CGACTTCATCGTAAGAAAATTCTTGTTGTTTTTGACGATGTGGACAAAAGGGAACAACTGGAGGCATTGATGGGAGAGAGATGCTGGTTTGGTGCCGGAA GTATAATAATTGTTGTAACTAAGAATAAGCATCTGCTAACAGAAGTGGGGGTAGATGGAATGTATCATGCTAAAGAATTGGATCGAGATCAGTCTCTTGA GCTTTTCAGTTTGCATGCTTTTAGGGAAACCCATCCAGCAAAGGATTATGAGGAGCTTTCAGGAAAGGTAGTTGACTACTGCAAAGGACTTCCTTTGGCT CTACAAATTTTGGGTTCTCATTTATCTATAAGAGACAAAGCTGGATGGGAAATCGATATTGCCCATTGGCGAAATATTCCGCATGATGATATTCAAGGAA AGCTTAGAGTAAGTTTTGATGCACTGAATGTGGATACAAGTGAGATATTCCTTGATATTGCGTGCTATTTTGTTGGTGGAGACAAAGAATATGTAGCAGA TATAGTAGGTGCTCGTTACGATTGCCATCCAGAAGTAGCTTTCAGAACTCTCATTGGAAGGTCTCTCATAACAATCGACACTTGGAATAGCTTATGGATG CATGATACATTACGAAAGATGGGAAGGGAGATTATTCGTCAAAGGTCGCGTAATCATCCTGGAAATTGCAGCAGAATTGTACTTCCCAAAGACGCATACA ATGTACTCTCCAAGGAACTGGGAACAGATGCTGTGGAGGGTCTGGCACTAGATGTGCAAGAATCTTTTAGCACAAAATCGTTTACAAAAATGAGACGTTT AAAATTACTCCAAATCAAAGGAGCAAATCTTGTGGGAAGCTACAGTCTTCTCCCCAAAGAGTTGATATGGCTTTGTTGGTTTGGATGCCCTTTGAAATCT TTGCCGTCTGATTTTCACTTAAACGACCTTGTTATACTTGATATGCAAGAAAGTAACGTACGAAAACTTTGGAAGGGGACTAAGATTCTTAACAAGCTGA AAATCCTCAATCTCAGCTATTCCAAGTACCTTGATGAAACGCCGAACTTTCGAGAACTCTCTTGTTTGGAGAGACTAATACTTACTGGATGCACGAGTTT GGTTAAGGTACATCAATCTATTGGAAATTTGAAGAGCCTTGTTTTGTTGAACTTGCATTACTGTGACAGCCTAAAGACTCTTCCAGAAAGCATGGGTAAC TTAAAATCTCTTCAAACTCTGAACGTTACTCAGTGCAGACAACTTGAGAAATTGCCAGAGAGTTTGGGTGACATAGAATCCTTAACAGAATTGTTTACAA AGGGTACTGCGATTAAGCAACTTCCTACTTCAGCTAGATATTTGAAGAAGCTGACAAAGTTATCATTTGGTGGATACAACAAAGTTTTCTACTCACCTGA TCTACCTTCTAAATCTCGGTTTTCAAGATTTTCTTTGTGGCTTTCACCACGAAACTGTTCTAGCTCCAACGCTATGCTACCAGCTTTTTTCAATAGTTTC AGCTCATTGAAAGAACTAAATCTAAGTTATGCTGGTTTGTCTGAAGCTACAAGTTCCATTGATCTTGGGAGTTTGTCCTTTCTTGAAGATTTGGATTTGT CTGGAAACAAATTCTTCAATCTGCCTTCTGGCATTAGCCTCCTTCCTAAGCTTCAATGTTTGAGGGTTGAGAAATGTTCGAATCTGCTATCAATCCCAGA GCTTCCATCAAGTGTCCTATTCTTGTCTATCAATGACTGCACATCCATTGAAAGAGTAAGTGCACCACTTCAGCACGAAAGACTACCATTACTGAATGTA AAAGGGTGCCGAAATTTAATAGAGATTCAGGGCATGGAATGCGCGGGCAATAACTGGTCCATTTTGAACTTAAATGGCTGCAGCAATTTATCTGAAAACT ATAAGATGAGTCTTATTCAGGGATTATGCAAAGGTAAACATTATGACATTTGCCTTGCTGGTGGTGAGATACCAGAATGGTTCAGCCATCGTGGAGAAGG ATCTGCATTATCATTTATTTTACCCTCAGTGTCAGTTCCAGTTCCAGATGGTAATAAACTCCAAGCGCTCCTTTTTTGGGTTGTCTCGGCCTCCACCAAT GAAGCCACTCTAGCAACATCACTTCCTCGGTTTGATAAGTGTGTTGCTACTTTCAAAAATAAGAGTAATGGTATTGAATTGTTTGAGACGATGGCGGCAG TTACGTTTGACAGAACTATCACGAAGCAGTCTTGGATACAGCGTATACCGTTGATTGGGTTAGAGGAATCGCTGCAAGGTGTAGAGGAATTGGAAGTGAA TGTCAAAATAAGCGTATATGATGTTCGAAAATTACAGCGTATACCGTTGATCGGGTCAGAGGAATCGCTGCAAGGTGTAGAGGAATTGGAACTGAATGTC AAAATAAGCTTCTATGATGTTCGAAAATGTTGGGTAGAAAAATGCGGGGTACATTTGATAATGGAAAAGAATAAAGCAGATTCAGATCAGGAGATTGATA TTCATGCTCCAGGCTCTGATGATCAGCCGTTGGAAAGTAGTTTGATAAGAGAGTTGCAAAAATGGAAAATCACCAGTTGCAGTAAATTTGGATAG
AA sequence Show only first row Show all	>Potri.019G003285.1 pacid=42774306 polypeptide=Potri.019G003285.1.p locus=Potri.019G003285 ID=Potri.019G003285.1.v4.1 annot-version=v4.1 MASTDSESPFSSSSSSSGHRWNYDVFLSFRGEDTRKNFTDHLYTALIQAGIHTFRDDNELPRGEEISPQLLKAIEGSRISIVVFSKHYASSRWCLDELVK ILECRQNIDQVVLPIFYDTEPSDVRKQTGSYAKAFDEHEERFKEEMEKVNKWRGALAEAGNLSGWGLHNEANGYEAEFIKRIVSDVACKLGNKTLHVAKH PVGIYSRVQGIISLLKGAKPDVGIVGIHGIAGIGKTTIAKAVFNKLYFGFEGSSFLSDVKEISDKPNGLVELQERLLHDILKPRVWKVSNVYEGMNLIKE RLHRKKILVVFDDVDKREQLEALMGERCWFGAGSIIIVVTKNKHLLTEVGVDGMYHAKELDRDQSLELFSLHAFRETHPAKDYEELSGKVVDYCKGLPLA LQILGSHLSIRDKAGWEIDIAHWRNIPHDDIQGKLRVSFDALNVDTSEIFLDIACYFVGGDKEYVADIVGARYDCHPEVAFRTLIGRSLITIDTWNSLWM HDTLRKMGREIIRQRSRNHPGNCSRIVLPKDAYNVLSKELGTDAVEGLALDVQESFSTKSFTKMRRLKLLQIKGANLVGSYSLLPKELIWLCWFGCPLKS LPSDFHLNDLVILDMQESNVRKLWKGTKILNKLKILNLSYSKYLDETPNFRELSCLERLILTGCTSLVKVHQSIGNLKSLVLLNLHYCDSLKTLPESMGN LKSLQTLNVTQCRQLEKLPESLGDIESLTELFTKGTAIKQLPTSARYLKKLTKLSFGGYNKVFYSPDLPSKSRFSRFSLWLSPRNCSSSNAMLPAFFNSF SSLKELNLSYAGLSEATSSIDLGSLSFLEDLDLSGNKFFNLPSGISLLPKLQCLRVEKCSNLLSIPELPSSVLFLSINDCTSIERVSAPLQHERLPLLNV KGCRNLIEIQGMECAGNNWSILNLNGCSNLSENYKMSLIQGLCKGKHYDICLAGGEIPEWFSHRGEGSALSFILPSVSVPVPDGNKLQALLFWVVSASTN EATLATSLPRFDKCVATFKNKSNGIELFETMAAVTFDRTITKQSWIQRIPLIGLEESLQGVEELEVNVKISVYDVRKLQRIPLIGSEESLQGVEELELNV KISFYDVRKCWVEKCGVHLIMEKNKADSDQEIDIHAPGSDDQPLESSLIRELQKWKITSCSKFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G003285 [exp]	0	1
AT3G07600			Heavy metal transport/detoxifi...		Potri.009G048400 [exp]	2.44	0.9764
					Potri.002G021100 [exp]	4.00	0.9678
					Potri.003G071050 [exp]	5.29	0.9760
AT3G07600			Heavy metal transport/detoxifi...		Potri.009G048300 [exp]	8.48	0.9522
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.019G120600 [exp]	9.48	0.9596
AT1G03220			Eukaryotic aspartyl protease f...		Potri.013G070300 [exp]	13.26	0.9530
AT1G11050			Protein kinase superfamily pro...		Potri.005G181800 [exp]	13.30	0.9684
AT1G43040			SAUR-like auxin-responsive pro...		Potri.002G000600 [exp]	17.32	0.9630
AT3G26230		CYP71B24	"cytochrome P450, family 71, s...		Potri.011G131001 [exp]	20.73	0.9589
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.002G128900 [exp]	21.33	0.9622

Compare expression of checked genes

Potri.019G003285 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.