Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 590 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G17680 458 / 5e-141 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27170 436 / 2e-132 transmembrane receptors;ATP binding (.1.2) AT5G41750 420 / 8e-129 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 416 / 3e-124 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G49140 405 / 4e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41540 404 / 4e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G64070 401 / 1e-122 RLM1 RESISTANCE TO LEPTOSPHAERIA MACULANS 1, Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 404 / 5e-122 TAO1 target of AVRB operation1 (.1) AT5G41550 397 / 2e-120 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T005501 [exp] 1893 / 0 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 1868 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G004599 [exp] 1036 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G007884 [exp] 895 / 0 AT5G36930 654 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 843 / 0 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 832 / 0 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 827 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002066 [exp] 825 / 0 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 824 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 559 / 4e-180 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 555 / 1e-178 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 545 / 3e-174 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 538 / 2e-170 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 524 / 1e-166 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 486 / 1e-153 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 478 / 3e-148 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 456 / 1e-140 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 410 / 5e-124 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10035674 [exp] 410 / 2e-122 AT5G36930 410 / 1e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G003942.1 pacid=42774668 polypeptide=Potri.019G003942.1.p locus=Potri.019G003942 ID=Potri.019G003942.1.v4.1 annot-version=v4.1 ATGGCTTCCACGGACTCTGAGTCTCCGTTCTCTTCTTCGTCTTCATCCTCTGGACATAGATGGAACTATGATGTTTTCCTAAGTTTTAGAGGAGAAGATA CGCGCAAAAATTTTACAGATCATCTCTATACCGCCTTAGGGAACGCCGGAATTCATACTTTTAGGGATGATAATGAACTTCCCAGAGGAGAAGAAATCTC TCCACAGCTTCTCAAGGCAATTGAAGGATCAAGGATTTCTATAGTGGTCTTCTCCAAACACTACGCTTCCTCTAGATGGTGTCTTGACGAACTGGTAAAG ATTATTGAGTGCAGGCAAAAGATTGGCCAGGTTGTTCTTCCTATATTCTATGATACGGAGCCTTCAGATGTCCGAAAACAGACCGGGAGTTATGCAAAAG CTTTTGATGAACATGAAGAACGCTTCAAGGAAGAAATGGAGAAGGTCAACAAGTGGAGAGGAGCTCTTGCACAGGCTGGAAATCTATCTGGATTTGGTTT AAACAATGAGGCAAATGGATATGAAGCGGAATTCATCAAAAGGATTGTCAGTGATGTAGCTTGTAAACTGGGAAACAAAACCTTGCACGTAGCCAAGCAC CCAGTAGGTATTTATTCCAGAGTTCAGTGTATTATTTCTTTGCTAAAAGGTGCAAAACCTGATGTTGGCATCGTGGGAATACATGGGATAGCTGGAATAG GCAAGACAACAATAGCAAAAGCTGTGTTTAACAAACTTTATTTTGGATTTGAGGGAAGCAGTTTTCTTTCGGACGTCAAGGAAATATCAGATAAGCCGAA TGGTCTGGTTGAATTACAAGAGCGCCTTCTTCATGATATTCTGAAACCAAGAGTTTGGAAGGTCAGTAATGTTTATGAAGGCATGAATTTGATCAAAGAA CGACTTCATCGTAAGAAAATTCTTGTTGTTTTTGACGATGTGGACAAAAGGGAACAACTGGAGGCATTGATGGGAGAGAGATGTTGGTTTGGTGCCGGAA GTATAATAATTGTTGTAACTAAGAATAAGCATCTTCTAACAGAAGTGGGGGTAGATGGAATGTATCATGCTAAAGAATTGGATCGAGATCAGTCTCTTGA GCTTTTCAGTTTGCATGCTTTTAGGGAAACCCATCCAGCAAAGGATTACGAGGAGCTTTCAGAAAAGGTAGTTGACTACTGCAAAGGACTTCCTTTGGCT CTACAAATTTTGGGTTCTCATTTATCCATAAGAGACAAAGCTGGATGGGAAATCGATATTGCCCATTGGCGAAATATTCCGCATGATGATATTCAAGGAA AGCTTAGAGTAAGTTTTGATGCACTGAATGTGGATACAAGCGAGATATTCCTTGATATTGCGTGCTATTTTGTTGGTGGAGACAAAGAATATGTAGCAGA TATAGTAGGTGCTCGTTACGATTGCCATCCAGAAGTAGCTTTCAGAACTCTCATTGGAAGGTCTCTCATAACAATCGACACTTGGAATAGCTTATGGATG CATGATACATTACGAAAGATGGGAAGGGAGATTATTCGTCAAAGGTCGCGTAATCATCCTGGAAATTGCAGCAGAATTGTACTTCCCAAAGACGCATACA ATGTACTCTCCAAGGAACTGGGAACAGATGCTGTGGAGGGTCTGGCACTAGATGTGCAAGAATCTTATAGCACAAAATCGTTTACAAAAATGAGACGTTT AAAATTACTCCAAATCAATAGAGCAAATCTTGTGGGAAGCTACAGTCTTCTCCCCAAAGAGTTGATATGGCTTTGTTGGTCTGGATGCCCTTTGAAATCT TTGCCGTCTGATTTTCACTTAAACGACCTTGTTATACTTGATATGCAAGAAAGTAACGTACGAAAACTTTGGAAGGGGACTAAGATTCTTAACAAGCTGA AAATCCTCAATCTCAGCTTTTCCAAGTACCTTGCTAAAACGCCGAACTTCCGAGGACTCTCTAGTTTGGAGAGACTAATACTTACAAAATGCCCGAGTTT GGTTGAGGTACATCAATCTATTGGAAATTTGAAGAGCCTTGTTTTGTTGAGCTTGGATTACTGTCGCAGCCTAAAGACTCTTCCAGAAAGCATGGGTAAC TTAAAATCTCTTCAAACTCTGAACTTGTTTACAAACGGTACTGCGATTAAGCAACTTCCTGCTTCAGCTAGATTTTTGAAGAAGCTGACAAAGTTATCAT TTGGTGGATACAACAAAGTTTTCTACTCAACTGATCTACCATCTAAATCTTGGTTTTCAAGATTTTCATCGTGGCTTTCTCCACAAAGCTGTTCGAGCTC CATAGATATGCTACCAGCTTCTTTCATTAGTTTCAGCTCATTGAAAGAACTAAATCTAAGTTATTCTGGTTTGTCTGAAGCTACAAGTTCCATTGATCTT GGGAGTTTGTGCTTTCTTGAAAATTTGAATTTGTCTGGACATGAATTCTTCAATCTGCCTTCTAGCATTAGCCGCCTTTCTAAGCTTCAATTTTTGACGG TTGAGAGATGCTCGAATCTTCTATCAATCTCAGAGCTTCCATCAAGTGTCCTGTTCTTGTCTATCAATGACTGCACATCCATTGAAAGAGTAAGCGCACC TCTTCAACACGAAAGACTACCATTACTGGATGTAAAAGGGTGCGGAAATTTAATAGAGATTCAGGGCATTGAATGTGCGGGCAATAACTGGTCCATTTTG AACTTAAATGACTGCAACAATTTATCTGAAAACTATAAGATGAGTTTTATTCAGGGATTGTGCAGAGGTAAACATTATGACATTTGCCTTGCTGGTGGAG AGATACCAGAATGGTTCAGCCATCGTGGAGAAGGGTCATCATTATCATTTCGTTTACCCTCAGTTTCAGTTGCAGATGGTAATAAACTCCAAGCACTGCT TCTTTGGGTTGTCTCGGCGTCTTCAGCACTAAAGACTACCAATGAAGCCACTGATCAAGAAACATCATTTCTTCAGTTTGATATGTGTGTTGCTACATTC AAAAATAAGAGCAATGGTATTGAATTGTTTGAGACGATGGCGGCAGTTACGTTTGACAGAAATTCCACTAAGCATTCTTGGATACAGCGTATATCGTTGA TCGGGTCAGAGGAATCGCTGCAAGGTGTAGAGGAATTGGAAGTGAATGTCAAAATAAGCTTCTATGATGTTCCAATATGTCGGGTAGAAAAATGTGGGGC ACATTTGATAATGGAAAAGAATAAAGCAGATTCAGATCAGGAGATTGATATTGATGCTCTAGGCTCTGATGATCAGCTGTTGGAAAGTAGTTTGACAAGA GAGTTGCAGAAATGGAAAATCACCTGTTGCAGTAAATTTGGATAG
AA sequence Show only first row Show all	>Potri.019G003942.1 pacid=42774668 polypeptide=Potri.019G003942.1.p locus=Potri.019G003942 ID=Potri.019G003942.1.v4.1 annot-version=v4.1 MASTDSESPFSSSSSSSGHRWNYDVFLSFRGEDTRKNFTDHLYTALGNAGIHTFRDDNELPRGEEISPQLLKAIEGSRISIVVFSKHYASSRWCLDELVK IIECRQKIGQVVLPIFYDTEPSDVRKQTGSYAKAFDEHEERFKEEMEKVNKWRGALAQAGNLSGFGLNNEANGYEAEFIKRIVSDVACKLGNKTLHVAKH PVGIYSRVQCIISLLKGAKPDVGIVGIHGIAGIGKTTIAKAVFNKLYFGFEGSSFLSDVKEISDKPNGLVELQERLLHDILKPRVWKVSNVYEGMNLIKE RLHRKKILVVFDDVDKREQLEALMGERCWFGAGSIIIVVTKNKHLLTEVGVDGMYHAKELDRDQSLELFSLHAFRETHPAKDYEELSEKVVDYCKGLPLA LQILGSHLSIRDKAGWEIDIAHWRNIPHDDIQGKLRVSFDALNVDTSEIFLDIACYFVGGDKEYVADIVGARYDCHPEVAFRTLIGRSLITIDTWNSLWM HDTLRKMGREIIRQRSRNHPGNCSRIVLPKDAYNVLSKELGTDAVEGLALDVQESYSTKSFTKMRRLKLLQINRANLVGSYSLLPKELIWLCWSGCPLKS LPSDFHLNDLVILDMQESNVRKLWKGTKILNKLKILNLSFSKYLAKTPNFRGLSSLERLILTKCPSLVEVHQSIGNLKSLVLLSLDYCRSLKTLPESMGN LKSLQTLNLFTNGTAIKQLPASARFLKKLTKLSFGGYNKVFYSTDLPSKSWFSRFSSWLSPQSCSSSIDMLPASFISFSSLKELNLSYSGLSEATSSIDL GSLCFLENLNLSGHEFFNLPSSISRLSKLQFLTVERCSNLLSISELPSSVLFLSINDCTSIERVSAPLQHERLPLLDVKGCGNLIEIQGIECAGNNWSIL NLNDCNNLSENYKMSFIQGLCRGKHYDICLAGGEIPEWFSHRGEGSSLSFRLPSVSVADGNKLQALLLWVVSASSALKTTNEATDQETSFLQFDMCVATF KNKSNGIELFETMAAVTFDRNSTKHSWIQRISLIGSEESLQGVEELEVNVKISFYDVPICRVEKCGAHLIMEKNKADSDQEIDIDALGSDDQLLESSLTR ELQKWKITCCSKFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G003942 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.019G001314 [exp]	1.00	0.9391
					Potri.003G184501 [exp]	2.00	0.8532
AT3G44480		COG1, RPP10, RP...	recognition of peronospora par...		Potri.019G095866 [exp]	2.44	0.9002
AT4G00770			unknown protein		Potri.014G077400 [exp]	4.00	0.8242
AT3G22640		PAP85	cupin family protein (.1)		Potri.005G212333 [exp]	5.56	0.7366
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028901 [exp]	7.21	0.8007
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	7.93	0.8115
AT4G11170			Disease resistance protein (TI...		Potri.019G095932 [exp]	8.66	0.8389
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G097300 [exp]	16.73	0.8031
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.001G037000 [exp]	17.43	0.7874

Compare expression of checked genes

Potri.019G003942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.