Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08250 163 / 6e-45 GRAS GRAS family transcription factor (.1) AT5G41920 131 / 8e-34 GRAS GRAS family transcription factor (.1) AT3G03450 127 / 8e-32 GRAS RGL2 RGA-like 2 (.1) AT5G17490 124 / 1e-30 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT1G55580 121 / 5e-30 GRAS SCL18, LAS SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) AT1G66350 121 / 8e-30 GRAS RGL1 RGA-like 1 (.1) AT3G54220 122 / 1e-29 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT2G01570 112 / 2e-26 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT1G14920 106 / 1e-24 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G21450 105 / 3e-24 GRAS SCL1 SCARECROW-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G190300 [exp] 340 / 4e-113 AT4G08250 138 / 7e-36 GRAS family transcription factor (.1) Potri.005G175300 [exp] 192 / 1e-55 AT4G08250 467 / 2e-161 GRAS family transcription factor (.1) Potri.002G086100 [exp] 192 / 2e-55 AT4G08250 468 / 6e-162 GRAS family transcription factor (.1) Potri.006G114200 [exp] 125 / 1e-30 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.015G008300 [exp] 121 / 4e-30 AT1G55580 398 / 3e-136 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Potri.017G125200 [exp] 122 / 8e-30 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G326000 [exp] 121 / 3e-29 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.008G131700 [exp] 119 / 1e-28 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.004G089800 [exp] 119 / 1e-28 AT2G01570 709 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020857 [exp] 324 / 2e-106 AT4G08250 164 / 3e-45 GRAS family transcription factor (.1) Lus10033517 [exp] 320 / 4e-105 AT4G08250 162 / 2e-44 GRAS family transcription factor (.1) Lus10008316 [exp] 186 / 8e-53 AT4G08250 444 / 5e-152 GRAS family transcription factor (.1) Lus10028056 [exp] 177 / 7e-51 AT4G08250 416 / 5e-143 GRAS family transcription factor (.1) Lus10012554 [exp] 126 / 5e-31 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10041540 [exp] 126 / 5e-31 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10027123 [exp] 122 / 3e-30 AT1G55580 298 / 5e-97 SCARECROW-LIKE 18, Lateral Suppressor, GRAS family transcription factor (.1) Lus10016496 [exp] 122 / 9e-30 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10040734 [exp] 122 / 1e-29 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10033583 [exp] 121 / 2e-29 AT2G01570 681 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.019G007100.2 pacid=42773414 polypeptide=Potri.019G007100.2.p locus=Potri.019G007100 ID=Potri.019G007100.2.v4.1 annot-version=v4.1 ATGGAATTTGAACAGCTCCATCACTCTATCAAACCAGGCTCCACTCAAAGTATCCATGAATTTAGCCTTGAATCTGTTTTTTCCTTGCAAACAGAAGATT CCATTGTTCTGAGTGCCATTCAAGATGATGCTTTATATGATGACTGCATGGAAAGGTTGCTGGAAATTGAGACAGAACTCATGGATTTTAGCTCCATGAC TCAAGATAATGTAATATGTCTTGAAAGTTCTGATGACGTACTGTTTGAATTGGGTCATGATATGATCCAAGAAACAACAGGGGATGTAAGCCTATTGAAG GAAGAAAATTCCCTCTTAAAGGGAATTCATGAGGAGCTATTGGATGATAGCAGCTTAACAGATCTTCTGTTGATGGGAGCTGAAGCTGTTGAAGCACAAA ATTGGACCCTCTCTTCCAACATAATAGCAAAGCTTCGGAATCTCTTATTGGATGGAGAAAATGGAGGTAGCTCATTCAATAGGCTGGCTTTGTTCTTCAC TCAAGGTCTGCATTACAAGAGCATTACTGCTCCTGAAATGTTGCTGCCTAGACCTGGTTATAGGCAACAATACAACATGTCTTCCTTTCAAGTTCTTCAA GAACTTTCTCCTTGTGTCAAGTTTGCACACTTCACAGCTAATCAAGCAATCCTTGAGTCCACACAAGGTGATCAAGAAATTCATATCATTGATTTTGACA TCATGGAGGGAATTCAATGGCCTCCTTTGATGGTTGACCTTACAATGAGAAAGGATGTTTCATTTAAAGTAACAGCCATCATTGGTGACCAGCAGGATGT GGCTGCTGTTCAACAAACAGGAAGAAGACTTAAAGAGTATGCAGATTCAATCAATTTGCCGTTCGTTTTCAAGCAGATGATGATGCTCAACGAAGAAGAT TTTGAAAGTATCGAAATGGGGCAAGCTCTTGTGGTCAATTGCATGATCCACCAGCTCCACATGCCTAATAGAAGTTTTTCTTCGATCAAGACTTTCTTGG GTGGTGTCAGCAGGTTATCACCCAAGCTAGTTGTTTTGGTTGAAGAAGAATTATTTAGTTTTTATAAATTTCCTTACATGTCTTATGAGTATTTGGGGGT GAAAATTGTAGATAGTGTGAGCCAATTCCCTTGTAAGAAGAAGGAGAGACTGTTGTGGGAAGAAGGGTTTGCGTCCTTGAAAGGGTTTAAGCCAGTCCCT TTGAGTTCATGTAATGTCTCTCAAGCCAATTTCTTGGTCAGCTTGTTCAGTGGAAGGTTCTGGGTACAACATGAGAAGTGTAGGTTGTCCCTGTGTTGGA AGTCTAGGCCTTTGACTACAGCTTCTATTTGGGTTCCAAAATCAGAAAAATAA
AA sequence Show only first row Show all	>Potri.019G007100.2 pacid=42773414 polypeptide=Potri.019G007100.2.p locus=Potri.019G007100 ID=Potri.019G007100.2.v4.1 annot-version=v4.1 MEFEQLHHSIKPGSTQSIHEFSLESVFSLQTEDSIVLSAIQDDALYDDCMERLLEIETELMDFSSMTQDNVICLESSDDVLFELGHDMIQETTGDVSLLK EENSLLKGIHEELLDDSSLTDLLLMGAEAVEAQNWTLSSNIIAKLRNLLLDGENGGSSFNRLALFFTQGLHYKSITAPEMLLPRPGYRQQYNMSSFQVLQ ELSPCVKFAHFTANQAILESTQGDQEIHIIDFDIMEGIQWPPLMVDLTMRKDVSFKVTAIIGDQQDVAAVQQTGRRLKEYADSINLPFVFKQMMMLNEED FESIEMGQALVVNCMIHQLHMPNRSFSSIKTFLGGVSRLSPKLVVLVEEELFSFYKFPYMSYEYLGVKIVDSVSQFPCKKKERLLWEEGFASLKGFKPVP LSSCNVSQANFLVSLFSGRFWVQHEKCRLSLCWKSRPLTTASIWVPKSEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G08250	GRAS		GRAS family transcription fact...		Potri.019G007100 [exp]	0	1
					Potri.015G120600 [exp]	2.00	0.9811
AT1G09560		GLP5	germin-like protein 5 (.1)		Potri.009G157100 [exp]	3.31	0.9812	Pt-GER2.21
AT1G16250			Galactose oxidase/kelch repeat...		Potri.011G046100 [exp]	5.47	0.9757
AT4G17810	C2H2ZnF	ZFP12	C2H2 and C2HC zinc fingers sup...		Potri.001G142900 [exp]	5.91	0.9716
					Potri.006G180650 [exp]	7.48	0.9700
					Potri.001G151150 [exp]	8.00	0.9727
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Potri.008G024400 [exp]	10.09	0.9373
					Potri.011G126051 [exp]	11.26	0.8761
AT3G07600			Heavy metal transport/detoxifi...		Potri.009G048100 [exp]	11.74	0.9513
					Potri.015G120500 [exp]	11.83	0.9460

Compare expression of checked genes

Potri.019G007100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.