Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 653 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 494 / 4e-153 transmembrane receptors;ATP binding (.1.2) AT5G17680 474 / 2e-146 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G27180 455 / 2e-137 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 414 / 7e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 410 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G41540 409 / 1e-124 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G11170 407 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 400 / 1e-122 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 399 / 2e-121 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G004599 [exp] 1009 / 0 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003285 [exp] 1008 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 1005 / 0 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 965 / 0 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 934 / 0 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 920 / 0 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 919 / 0 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.012G135700 [exp] 919 / 0 AT5G36930 640 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002400 [exp] 906 / 0 AT5G36930 658 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 627 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 603 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 546 / 6e-174 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 546 / 1e-172 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 528 / 3e-167 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 494 / 6e-156 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 484 / 3e-150 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10001375 [exp] 470 / 1e-143 AT5G36930 464 / 3e-141 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10003749 [exp] 462 / 1e-141 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 441 / 8e-135 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.019G007884.1 pacid=42774696 polypeptide=Potri.019G007884.1.p locus=Potri.019G007884 ID=Potri.019G007884.1.v4.1 annot-version=v4.1 ATGTCATTGCTTCCTGAAAATCACCAATCAAGCCTTGAGCCATTTTCATCAGAAGGTAGAACTGGGCAGCAATTTCAATTGTCATTGCTTCCTGAAAATC ACCAATCAAGCCTTGAGCCATTTTCATCAGGTCCCATGTCCACCTTATCCAGAGCCTCTCCTTCTTCTTCCTCTAGACATGGAGGGACTTACGATGTCTT TCTAAGCTTTAGAGGAGAAGATACTCGAAAACAATTTATAGATCATCTCTACGTTGCCTTGGCCCATGCTGGAATCCATACTTTTCGGGATGACGATGAA CTCTCTCGAGGAGAAGAGATCTCCCCAGCACTCTCTTATGCAATTCGAGAATCAAAGATATCCTTGGTGGTCTTCTCCAAGAACTATGCTTCCTCTAGAT GGTGTCTTGATGAACTTGTAACGATTCTTGAGAGAAGAAAGATGGGTCAGATTGTTGTTCCCGTGTTCTATGATATTGATCCTTCAGATGTTAGAAAACA GACTGGGAGTTACGCTGATGCTTTTGCTAGACATGGAGAACGCTTCAATGGAGAAACTGATAGGGTCATTAAGTGGAGAGGAGCTCTAACGGAGGCTGCA AATCTATCTGGGTGGTCTCTTAAAGATATTGCAAACGGGTATGAATCGGAACTTATCAGACGTATTGTGGGAGATATTCTTGTTAAATTGAGTCACAATT ACTTCCATTTTCCCAATCAAACAGTAGGTATTGATTCCCGGGTGGAGGACATTATCAAATCGCTTACTGTTGTTACGGAGGATGTTAGAATTGTGGGATT ACATGGGATGTCAGGATGTGGCAAGACAACTTTAGCAAAAGCTGTATTCAATAAACTCTATCATGGATTTGGGAAACGGTGTTTTCTTTTCAACGTCAAA GAAATGTCACAACAGCCTAATGGTCGGGTTCGATTACAGGAGGAGTTTCTTCGACGTGTTTTCAAATTAGGTGAATTCAAGCAGATTGATGATGTTGATA AAGGAATGAATATGATTAAGGAAAGACTTTGGGACCAAAGGGTTCTTGCCGTTCTTGATGACGTGGATCAACCAGAACAACTACATGAATTGGTGGAAGT GCGAAGTTGGTTTGGTCCTGGTAGTATAGTTATCATTACAACTGGAAACGAACATTTGCTAACTCAACTTGAAGTGAATGTAAAATATCGTGTTGCAAAA TTGAGTCACGCTGAATCTCTTGAGCTTTTCAGTCGGCATGCCTTTAGGGACACCCAACCAATAGAAGATTATGCGATGCTTTCGAATGATGTGTTGAGCT ACTGTGGAGGACATCCTTTGGCTCTTGAACTTTTGGGTTCTTTTTTGTTTAAAAGAGAGAAGCCCGAGTGGGAAAGTCTCATTGACAGTTTAAAAAAAAT CACACCCGATCAAATACAGCAAAAGCTCAGAATAAGTTTCGAGGCATTGGGTGGTGGTCCAGTAAAGAGCATATTCCTCGACATTGCATGCTTTTTTGTT GGTAGAGACAAGGAATATGTAAAAACGATACTAGATGCCCGTTATGGTTTCAACACAGAAATTGCTATTAAGAATCTCATCGAAAGGTCTTTCATTACAA TTGATTCAAAAAAGGAGATAAACTTGAATAATCTATTACGAGATATGGGAAGAGAGATAAACCGTGAAATGTCACCTGACCATCCTGGAAATCGCAGCAG AATCTGCTTTCATGATGATGCATTGGATGTCCTCTATAATAAAAAGGGAACAAAATCTGTTCAGGGTCTTGCTCTAGATGTTCGATTTTCAAAATCAGAA ACATTGAGCTCAGAATCATTTATGAAGATGAGATGCTTAAAATTACTCCAAATCAATGGAGTATATGTCACTGGATGCTTCCAACATCTTTCCAAAGAGT TGTTATGGCTCTGCTGGCATGAGTGTCCTTTGAGATCTTTACCATCCGATTTTCATCTACAAGACATAGTTATCCTTGATTTTCAGAACAGTAACATCGA AGAACTATGGAAGGAGATCAAGTTCCTCAACAAGTTGAAAATCCTTGATCTCAGCTATTCCAAATTCCTTTCTAGAACTCCAAACTTGCATAGTCCAAGT CTAGAGAAACTAATACTTGAGGGTTGCTCAAGTTTAGTTGAGCTTCATCAATCTATTGGACGTTCAAAGGGGCTTGTTTACTTAAACTTGAGGGGATGTT GCAGACTCAAGAATCTTCCAGAAAGCATCTGTGAGTTGGAATTTCTTGAAACCCTCAATATTACTATGTGCTCTCAACTTGAGAAATTGCCTAAGCACAT TGGTAATATGGAATGCTTAAGGGGGTTGCTGGCAGATGGAACTTCAATTAAGCAACTCCCCCTTTCTATTGTCTTTTTTAAGAAACTCGAGAAGCTATCA CTATGTGGACGCAATTATGACAAACTAGATTCACCATCTGGACCCTGGCATTTACCATTTTCTTCATGGTTTTCACCAAGAAACACAGACTCCAAAACTC TGCTGCCAGTTTCTTTCGGTTGCTTGATGTCATTGAGAGAACTAGATATCAGTTACCATGGCTTGTCTGAAGGTTCCATTTCTGTTGCTTTTGAGAGTTT GTCAGCTCTCAGAAGGTTGGATTTATCAGGAAACAAATTCCTTTATATGCCTTTTGGCATTGGCGGTATTCCGAAGCTAGAGATATTGTTAGTTGTAAAC TGCAAAAATCTCCAATCAATCGCGGAGCTTCCCTCAAGTTTATTGCTCTTGGATGCAACTAATTGCACATCAATGGAAAGCCTAGCAGTTCCATCAAACA AATGTGCATTGAAATTACGTGGGTGCCAAAAACTGAGAGAGATTCATGGCATAGAAGGTGGGAGTGACTGCACATCCGTTGTTCACATGGAATGTTGCAA CAATTTATCAAATAATTTCAAGAGGAGTCTTGTTCAGGCATTGTGCAAGGGTAAGCGTGATGAAATCTTCTTCCCTGCTGATGAGATCCCAGAATGGTTC AGCCATCATGGAGATGGATCTTCATTATCATTTCTTCTGCCAGCACTTTCATTTGGTGATGAACTCCTAGCGATGATTGTTTGGGTTGTCTTCGCAGTTG ATGAAAGAAGATTTCTCAATCTATATCCTTCTGCTATTATAAGAAATAAGAGCAATGGTAAAAAATTGGTGGAAAGGTCAATGCACATTGGATTTATTTC GAGTAGCCATTCTTGGGTAAGCCATGCACCATTTGTTGTCCTTCCATGTGCAATGGAAGGTGGGGGGGAATTAGAACTCAATGTGGAAGTAGAGGAGGAT GCCATAGTAGAGAAGTGTGGGGTACATCTGGTTGTAAAAAGGGCAGATTTGAGGGACGGTCAAGGAACGTTCCACGAGAACTTGGAAGCTGCTATAGTTG AAAAACCGGATGAAGTGGCCACTGTGAAAAGAGGTCAGGATTACAATCATGATGAACGAAGCTTGAAAAGGCTGAAGCCACTTTGTAGGACTTCTTCCAG CAATTGGGTTGTTACATCTGAAGAAATTATATAG
AA sequence Show only first row Show all	>Potri.019G007884.1 pacid=42774696 polypeptide=Potri.019G007884.1.p locus=Potri.019G007884 ID=Potri.019G007884.1.v4.1 annot-version=v4.1 MSLLPENHQSSLEPFSSEGRTGQQFQLSLLPENHQSSLEPFSSGPMSTLSRASPSSSSRHGGTYDVFLSFRGEDTRKQFIDHLYVALAHAGIHTFRDDDE LSRGEEISPALSYAIRESKISLVVFSKNYASSRWCLDELVTILERRKMGQIVVPVFYDIDPSDVRKQTGSYADAFARHGERFNGETDRVIKWRGALTEAA NLSGWSLKDIANGYESELIRRIVGDILVKLSHNYFHFPNQTVGIDSRVEDIIKSLTVVTEDVRIVGLHGMSGCGKTTLAKAVFNKLYHGFGKRCFLFNVK EMSQQPNGRVRLQEEFLRRVFKLGEFKQIDDVDKGMNMIKERLWDQRVLAVLDDVDQPEQLHELVEVRSWFGPGSIVIITTGNEHLLTQLEVNVKYRVAK LSHAESLELFSRHAFRDTQPIEDYAMLSNDVLSYCGGHPLALELLGSFLFKREKPEWESLIDSLKKITPDQIQQKLRISFEALGGGPVKSIFLDIACFFV GRDKEYVKTILDARYGFNTEIAIKNLIERSFITIDSKKEINLNNLLRDMGREINREMSPDHPGNRSRICFHDDALDVLYNKKGTKSVQGLALDVRFSKSE TLSSESFMKMRCLKLLQINGVYVTGCFQHLSKELLWLCWHECPLRSLPSDFHLQDIVILDFQNSNIEELWKEIKFLNKLKILDLSYSKFLSRTPNLHSPS LEKLILEGCSSLVELHQSIGRSKGLVYLNLRGCCRLKNLPESICELEFLETLNITMCSQLEKLPKHIGNMECLRGLLADGTSIKQLPLSIVFFKKLEKLS LCGRNYDKLDSPSGPWHLPFSSWFSPRNTDSKTLLPVSFGCLMSLRELDISYHGLSEGSISVAFESLSALRRLDLSGNKFLYMPFGIGGIPKLEILLVVN CKNLQSIAELPSSLLLLDATNCTSMESLAVPSNKCALKLRGCQKLREIHGIEGGSDCTSVVHMECCNNLSNNFKRSLVQALCKGKRDEIFFPADEIPEWF SHHGDGSSLSFLLPALSFGDELLAMIVWVVFAVDERRFLNLYPSAIIRNKSNGKKLVERSMHIGFISSSHSWVSHAPFVVLPCAMEGGGELELNVEVEED AIVEKCGVHLVVKRADLRDGQGTFHENLEAAIVEKPDEVATVKRGQDYNHDERSLKRLKPLCRTSSSNWVVTSEEII

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G007884 [exp]	0	1
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.014G136466 [exp]	3.00	0.9087
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.003G081200 [exp]	6.78	0.9154
AT4G02380		SAG21, ATLEA5	Arabidopsis thaliana late embr...		Potri.002G203500 [exp]	7.48	0.8781
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Potri.010G187900 [exp]	7.48	0.9011
AT2G27480			Calcium-binding EF-hand family...		Potri.009G163600 [exp]	10.24	0.8590
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Potri.016G137400 [exp]	10.24	0.9001
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Potri.003G092200 [exp]	13.41	0.8779	ATMYC2.1
AT1G47710			Serine protease inhibitor (SER...		Potri.014G036000 [exp]	13.71	0.8466
AT5G36930			Disease resistance protein (TI...		Potri.006G270000 [exp]	14.14	0.8700
AT1G15060			Uncharacterised conserved prot...		Potri.010G119700 [exp]	14.38	0.8718

Compare expression of checked genes

Potri.019G007884 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.