Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 301 / 1e-85 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 266 / 1e-73 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 240 / 2e-65 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 226 / 1e-60 RFL1 RPS5-like 1 (.1) AT5G63020 225 / 2e-60 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12280 220 / 5e-59 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G26090 217 / 6e-58 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT5G43730 214 / 5e-57 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12290 213 / 9e-57 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G51480 209 / 3e-55 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G011826 [exp] 1998 / 0 AT4G27220 314 / 2e-90 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145532 [exp] 1467 / 0 AT4G27190 266 / 2e-73 NB-ARC domain-containing disease resistance protein (.1) Potri.T012000 [exp] 1370 / 0 AT4G27220 314 / 1e-89 NB-ARC domain-containing disease resistance protein (.1) Potri.019G009198 [exp] 1321 / 0 AT4G27220 295 / 2e-83 NB-ARC domain-containing disease resistance protein (.1) Potri.019G020500 [exp] 1146 / 0 AT4G27220 326 / 2e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G020102 [exp] 1085 / 0 AT4G27220 297 / 6e-85 NB-ARC domain-containing disease resistance protein (.1) Potri.019G013140 [exp] 1033 / 0 AT4G27220 294 / 1e-84 NB-ARC domain-containing disease resistance protein (.1) Potri.T023966 [exp] 976 / 0 AT4G27220 307 / 2e-89 NB-ARC domain-containing disease resistance protein (.1) Potri.018G136500 [exp] 968 / 0 AT4G27220 358 / 8e-108 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 137 / 3e-32 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 125 / 1e-28 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 117 / 6e-26 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 111 / 2e-24 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 108 / 2e-23 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 108 / 2e-23 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 105 / 2e-22 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10002945 [exp] 100 / 9e-21 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 98 / 2e-20 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 98 / 3e-20 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G011169.1 pacid=42773800 polypeptide=Potri.019G011169.1.p locus=Potri.019G011169 ID=Potri.019G011169.1.v4.1 annot-version=v4.1 ATGAGTCGACCAAATGATCCTTTTTGGGAATATGCTGAAAAGATGGATGATGGTAGCATGACGTGTACGTTTTGTGGGCATTGTTTTTCCCAAGGTACTT CCGTTACGAGGATCAAATTGCATTTGGCAGGAGTGAAACGGCGTGGTGTTAAAATTTGTAAAAATGTTCCAGAAGAAGTTCGAGATGCAGCTTGTGATGC AGTTAATAATAGCCCTCCAGAAAAGAAACTTAAATCTGTTGCGGGCTCAAGCAGTAACGAGGTCGCTAATGCAATTTCAGCTTCAACGCAAGAACAGAAC AATGAAGTGACCCATGTAGAGATGGCACAACAAGGAGGACCTTTTTTCACTGGAGAACTTGCATGGGCAAATGATTTGATTGGAGAGGCTGAACTTGTGC AGCTGGAGAGAGGTAGTTCTCATGAGAGGCCATCAATTAATCAAACAGATGAGCCTCGAGGAGATTCATCCCGACCAACAGATGATCAACTCTGTTCTCC ATCAGTAAACAATGATGCCAATATGAACGATGTGCAGAACATGGTTGCAGTCAGGATAGAACCAGTACCGGTTCAAGTGTTGGAACAAAGCAATGCAGAA GTTGACAGTTTGGCAGGGCATGCTGGAAGGATACAAGTGGGAGTTCATGGCATGGAACAAGGTGCGGAGGAAGAGAGAATTTGTCCGAACTCAGCGGCAA ATGGCATGGAAAACACTGGTGATGGATCTAGTCAGCATTCCAGGAGACTCATGATTGATGCACATGATAATACAGGGGAAGAAGCTACACAAAGAATAGA TCTAGTGCAACGATTAGAAGGGGAAACTTGGGGTCAGATGAATGCAATCTCTGCTTTTTTAATGGGGGAGGAGGACGTGGAGAACAATCGTGGAAGATTA GTGCAGCCTGGAGCAGCTTGCTCTTCTGGAGGGGCTGCATGCAACACAAATAAGATTAAAGGAGATGCACTGCCAACGAGAAAAATGGTGGGTCAAGCAT TCGAAGAACATAAGAAGACTATCTCATCTTTGTTGATGCGCAATGAAGTTTCAAGTATTGGTATCTATGGGATGGGCGGAGTGGGAAAGACCACATTGGG GACACATATACATAATCAGCTTCTAGAAAGACCAGAGACTCCTGTTTACTGGATTACTGTTTCACATAATACCAGCATTCCTAGATTGCAGACAAGTCTC GCAGGACGAATTGGTTTAGATCTTTCCAAGGTAGATGAGGAGCTGCATAGAGCGGTAGCGTTGAAAAAAGAATTAATGAAGAAACAGAAATGGATTCTGA TTTTAGATGATTTGTGGAAGGCTTTTGACCTGCAAAAGCTGGGAGTTCCTGACCAAGTTGAGGAGGGATGCAAGCTGATTCTTACATCTCGATCAGCAAA GGTTTGTCAACAGATGAAAACCCAACACACGATAAAAGTGCAGCCTATTTCGGAGAAAGAAGCTTGGACTTTGTTTATTGAGAGACTTGGACATGACATA GCATTTTCTTCAGAAGTGGAAGGAATTGCTTTGAATGTTGTAAGGGAATGTGCTGGTTTGCCATTGGGAATTATTACAATAGCAGCAAGCATGAGAGGAG TGGATGAGCCACATGAGTGGAGGAATACATTGAAGAAATTGAAAGAATCAAAATATAAGGAAATGGAAGATGAGGTATTCCGATTATTGAGGTTTAGTTA TGATCAGCTAAATGATTTAGCATTACAACAATGTCTCTTGTACTGTGCATTGTATCCTGAAGATCATAGGATTGAAAGGGAGGAGCTGATAGGTTATTTG ATCGACGAGGAAATAATTGAAGGAATGAGGAGCAGGCAAGCAGCATTTGACGAGGGCCGCACGATGCTTGATAAACTTGAAAAAGTCTGTTTATTGGAAA GAGCTTGTTATGGTGATCATAGTACAACTGTCAAGATGCATGACTTGATTAGGGACATGGCCCACCAAATACTCCAAACAAACTCTCCAGTCATGGTTGG GGGATATAATGATAAATTACCAGATGTGGATATGTGGAAAGAGAATCTAGTGAGAGTCTCTCTGAAGCATTGTTATTTCGAGGAAATTCCTTCTAGTCAT TCACCAAGATGTCCCAATCTTTCAACTCTATTGCTGTGTGATAATCCTTATTTGCAATTTATTGCAGATTCTTTTTTCACACAATTGCATGGGCTCAAGG TTCTTGATCTGTCTCGTACAGAAATCATAGAATTGCCTGATTCTGTCTCTGAACTGGTGAGTCTCACTGCATTATTGCTCAAACAATGTGAATATTTAAT ACATGTACCATCATTAGAAAAGCTCACAGCACTGAGGAGGCTAGATCTCTCTGGTACTTGGGAACTTGAAAAGATACCTCAAGACATGCAATGTCTATCT AACCTGAGGTATCTGAGGATGGATGGATGTGGTGTAAAGGAGTTTCCTACTGGGATATTACCAAAACTCTTTCACCTACAACTCTTCATGTTAGAGGGGA AGACTAATTATGACTACGTTCAAGTAACAGTTAAGGGAAAGGAAGTAGGATGCTTGAGGGAGTTGGAAAATTTGGTATGCAATTTTGAAGGTCAATCTGA CTTTGTGGAGTATCTCAATTCTCGGGATAAGACCCGATCACTAAGTACATACGATATTTTTGTAGGACCACTGGATGAAGATTTTTATAGTGAAATGAAG CGTGGTTATGGCAAAAGTAAAACAGTTTGGTTGAGTAGTTTGTGTAACAATGGAGATGGAAATTTTCAAGTAATGTTCCCAAATGACATTCAAAAACTGA TTATTTTTAATTGTTCATGTGATGTTTCCTCTTTAATAGAGCATTCAATTAAACTGGAGGTCATCCACATTAAGGATTGCAATAGCATGGAGAGCTTGAT TTCATCTTCTTTGTTCTGCCCTTCTCCAACATCATTGCCATCTTATAATGGTGTATTTTCTACTCTTAAAGAGTTTAATTGTTATGGATGTAGTAGTATG AAGAAGTTGTTCCCTCTTGTCTTGCTGCCAAACCTCGTAAACCTAGTAAATATTACAGTTATAGATTGTGCAAAAATGGAGGAGATAATAGGTGGAAGAA GATCAGATGAAGAAAACAGCAGCAACAACACCGAATTCAAGCTCCCAAAGTTAAGATCTCTGGCATTGAGTTGGTTACCAAAACTGAAAAGAATTTGTAG TGCAAAACTGATTTGCGATTCTCTCCAACAAATTGAAGTAAGTTACTGCAATAGCATGGAGAGCTTGGTTCCATCTTCTTGGATTTCCCTCGTAAACCTA GAAAAGATTACAGTTAGAGGATGTCAGAAGATGGAGGAGATAATAGGTGGAAGAAGATCAGATGAAGAAAGCAGCAGCAACAACACCGAATTCAAACTCC CAAAGTTAAGATCTCTGGCATTGGAAGATTTACCAGAACTGAAAAGCATTTGTAGTGCAAAGCTGACGTGCGATTCTCTCCAACAAATTGAAGTATGGAA TTGCAACAGCATGGAGAGCTTGGTTCCATCTTCTTGGATTTCCCTCGTAAACCTAGAAAAGATTACAGTTAGAGGAGGTGAGAAAATGGAGGAGATAATA GGTGGAAGAAGATCAGATGAAGAAAGCAGCAGCACCGAATTCAAACTCCCAAAGTTAAGATCTCTGGCATTGTTTAATTTACCAGAACTGAAAAGCATTT GTAGTGCAAAGCTGACGTGCGATTCTCTCCAACAAATTGAAGTATGGAATTGCAACAGCATGGAGATCTTGGTTCCATCTTCTTGGATTTCCCTTGTAAA CCTAGAAAAGATTACAGTTAGTGCATGTAAGAAGATGAAGGAGATAATAGGTGGAACAAGATCAGATGAAGAAAGTAGCAGTAACAACACCGAATTCAAA CTCCCAAAGTTAAGATCTCTGGCATTGAGTTGGTTACCAGAACTGAAAAGAATTTGTAGTGCAAAACTGATTTGCGATTCTCTCAGAATGATTGAAGTTT ATAAATGTCAGAAGCTGAAGAGGATGCCATTGTGGAAGAAGGATTATACATCCAAGAGAATGGTGGGAGTCAGTAGTGGTGTGGGAGCATCCTAA
AA sequence Show only first row Show all	>Potri.019G011169.1 pacid=42773800 polypeptide=Potri.019G011169.1.p locus=Potri.019G011169 ID=Potri.019G011169.1.v4.1 annot-version=v4.1 MSRPNDPFWEYAEKMDDGSMTCTFCGHCFSQGTSVTRIKLHLAGVKRRGVKICKNVPEEVRDAACDAVNNSPPEKKLKSVAGSSSNEVANAISASTQEQN NEVTHVEMAQQGGPFFTGELAWANDLIGEAELVQLERGSSHERPSINQTDEPRGDSSRPTDDQLCSPSVNNDANMNDVQNMVAVRIEPVPVQVLEQSNAE VDSLAGHAGRIQVGVHGMEQGAEEERICPNSAANGMENTGDGSSQHSRRLMIDAHDNTGEEATQRIDLVQRLEGETWGQMNAISAFLMGEEDVENNRGRL VQPGAACSSGGAACNTNKIKGDALPTRKMVGQAFEEHKKTISSLLMRNEVSSIGIYGMGGVGKTTLGTHIHNQLLERPETPVYWITVSHNTSIPRLQTSL AGRIGLDLSKVDEELHRAVALKKELMKKQKWILILDDLWKAFDLQKLGVPDQVEEGCKLILTSRSAKVCQQMKTQHTIKVQPISEKEAWTLFIERLGHDI AFSSEVEGIALNVVRECAGLPLGIITIAASMRGVDEPHEWRNTLKKLKESKYKEMEDEVFRLLRFSYDQLNDLALQQCLLYCALYPEDHRIEREELIGYL IDEEIIEGMRSRQAAFDEGRTMLDKLEKVCLLERACYGDHSTTVKMHDLIRDMAHQILQTNSPVMVGGYNDKLPDVDMWKENLVRVSLKHCYFEEIPSSH SPRCPNLSTLLLCDNPYLQFIADSFFTQLHGLKVLDLSRTEIIELPDSVSELVSLTALLLKQCEYLIHVPSLEKLTALRRLDLSGTWELEKIPQDMQCLS NLRYLRMDGCGVKEFPTGILPKLFHLQLFMLEGKTNYDYVQVTVKGKEVGCLRELENLVCNFEGQSDFVEYLNSRDKTRSLSTYDIFVGPLDEDFYSEMK RGYGKSKTVWLSSLCNNGDGNFQVMFPNDIQKLIIFNCSCDVSSLIEHSIKLEVIHIKDCNSMESLISSSLFCPSPTSLPSYNGVFSTLKEFNCYGCSSM KKLFPLVLLPNLVNLVNITVIDCAKMEEIIGGRRSDEENSSNNTEFKLPKLRSLALSWLPKLKRICSAKLICDSLQQIEVSYCNSMESLVPSSWISLVNL EKITVRGCQKMEEIIGGRRSDEESSSNNTEFKLPKLRSLALEDLPELKSICSAKLTCDSLQQIEVWNCNSMESLVPSSWISLVNLEKITVRGGEKMEEII GGRRSDEESSSTEFKLPKLRSLALFNLPELKSICSAKLTCDSLQQIEVWNCNSMEILVPSSWISLVNLEKITVSACKKMKEIIGGTRSDEESSSNNTEFK LPKLRSLALSWLPELKRICSAKLICDSLRMIEVYKCQKLKRMPLWKKDYTSKRMVGVSSGVGAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G011169 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.014G003832 [exp]	4.58	0.8638
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.018G022900 [exp]	4.69	0.8722
AT1G11330			S-locus lectin protein kinase ...		Potri.011G037800 [exp]	6.00	0.9030
AT4G20860			FAD-binding Berberine family p...		Potri.019G063400 [exp]	8.48	0.8545
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145562 [exp]	8.48	0.8333
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Potri.008G082700 [exp]	10.77	0.8238
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123200 [exp]	16.43	0.8233
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	19.97	0.8540
AT5G10530			Concanavalin A-like lectin pro...		Potri.001G284200 [exp]	22.89	0.8604
AT1G56130			Leucine-rich repeat transmembr...		Potri.018G026800 [exp]	28.70	0.8538

Compare expression of checked genes

Potri.019G011169 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.