Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 323 / 1e-94 NB-ARC domain-containing disease resistance protein (.1) AT1G12280 282 / 2e-80 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G10780 280 / 2e-79 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43730 267 / 2e-75 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12210 268 / 3e-75 RFL1 RPS5-like 1 (.1) AT4G27190 264 / 1e-73 NB-ARC domain-containing disease resistance protein (.1) AT1G12220 261 / 4e-73 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12290 259 / 8e-73 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61190 259 / 1e-71 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 257 / 1e-71 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014346 [exp] 1877 / 0 AT4G27220 317 / 1e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 1723 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014304 [exp] 1690 / 0 AT4G27220 283 / 2e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014380 [exp] 1654 / 0 AT4G27220 302 / 5e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 1459 / 0 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014328 [exp] 1421 / 0 AT4G27220 283 / 2e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014312 [exp] 1406 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014340 [exp] 1406 / 0 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014322 [exp] 1295 / 0 AT4G27220 319 / 3e-92 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 142 / 6e-34 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 140 / 3e-33 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 133 / 4e-31 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 125 / 1e-28 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 124 / 2e-28 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 123 / 5e-28 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 122 / 1e-27 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 120 / 3e-27 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 119 / 5e-27 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 118 / 2e-26 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G014308.1 pacid=42773105 polypeptide=Potri.019G014308.1.p locus=Potri.019G014308 ID=Potri.019G014308.1.v4.1 annot-version=v4.1 ATGGGTAGATCAGATGATCCGTTCTGGAAGGAAGTTGAAGATATGAATGATGGAAGCATGAAATGTAAGTTTTGTGGGCATTTATTTGCGAATGGTACTT CCATTTCGAGGATCAAATGGCATTTTTCGGGAGAGAGAGGGCATGGTGTTGGCATTTGTGGTCAGGTGCCTAAAGAAGTTCAAGAAGCAGCCTTTCTAGC TATGCGTGGTGGCTACAAAAGACATAAAGGCATAGCAAGTTTAAGCAATGTTAATGATTATGCCATTTCCACCTGTCCACAAGAACAAGACAATGCAGTA CTTGGTAATTTGGCACAAGGTGTTGGGCCTGAGAGAATTCATTCGCGTTTAGAAGCGGCAAATGGCATGGAATACACTGGTGAAGGATCTTTTCAGCATG TTGACAGAAGTGTCTCTCCTTGGAGACTCAGAGTTGATGCTCATGAGAATAGAGGAGAAGCAACACCAGGAACAGATTTAGTGGATCAATTTGCTGATGG TACTTGGGTTCAGATACACTCTGCCCTTTCAAAGGAGCAGAAGCTGAATGAAATCTCTACCTATTTAATGCAGGAAGATGAGGATGTGGAGCGTCTGCAT GATGGATCTGAAACTATACCGAGAACAGAACAAGTGCAGCATCTGGAGAGAGGTAGCTCTTGTGAGAGGCCATCAATTAATCAAGCTGATGAGCCTCGAG GAGATTCATCCCAACCAACAGATCCATTGTGTCTTGACCATGGAAGATATTATAATCAACTCTGTGCACCTTCACTAAGCAAAGATGTCATTATGTATGA TGTGCAAAACATGGTTAGAGAGAGGACAGAACCAGTGGAGGAGGAGGGTGTGGAGAATAGTGGAAGATTAGTGCAACATGGCACAGGAGCTAGATCTTCT AGATGTCTTAAATACAACACAAGTGAGACTAGAGGAGTTCCATTACCTACTAGCTCTACAAAGCCAGTGGGTCGAGCATTTGAAGAGAATAAGAAGTTGA TATGGTCTTTGTTAGTGGATGATGAAGTCCCGACCATTGGCATTTATGGGATGGGGGGAGTTGGTAAAACAACAATACTGCAACATATCCATAATGAGCT TCTACAAAAACCAGATATTTGTGATCATGTTTGGTGGGTGACTGTGTCTCAAGATTTCAGCATTAATAGATTGCAGAATCTTATTGCTAAACGTTTTCGT CTAGACCTTTCAAGCGAAGATGATGATCTGTATAGAGCTGCCAAATTGTCAAAAGAACTAATGAAAAAACAAAAATGGATTCTCATTTTAGATGATTTGT GGAACAATTTTGAGCTTGATGAAGTGGGAATTCCTGTCCCGTTGAAAGGATGCAAACTGATTATGACAACTCGATCAGAAACGGTTTGTCATCGGATGGC TTGCCACCGCAAAATCAAGGTAAAGACAGTTTTTGAGGGAGAAGCTTGGACTTTGTTCATGGAGAAACTTGGACGTCGCATAGCATTTTCACCAGAAGTG GAAGCAATTGCGAAAGCTGTCGCAAGGGAATGTGCTGGTTTGCCATTGGGAATTATTACAGTCGCAAGAAGTTTGAGGGGAGTGGATGACCTACCTGAGT GGAGAAATACATTGAAGAAATTGAGAGAATCAGAATTTAGGGACAAGGAAGTATTCAAGTTATTGAGGTTTAGTTATGATCGGTTAGGTGATTTAGCACT ACAACAATGTCTCTTGTACTTTGCATTATTTCCTGAAGATTATATGATTGAAAGGGAGGAGTTGATAGGTTATTTGATCGACGAGGGAATAATTAAAGGA AAGAGGAGAAGGGAAGATGCATTTGATGAGGGCCACACGATGCTTAATAGACTTGAAAATGTCTGTCTATTGGAAAGTGCTAGAGTAAATTATGATGATA ATAGACGTGTCAAGATGCATGACTTGATTAGGGACATGGCCATCCAAATACTGCTAGAGAACTCTCAATACATGGTTAAAGCAGGTGCACAATTAAAAGA GTTGCCAGATGCAGAGGAATGGACGGAGAATCTGACGAGAGTTTCATTAATGCAAAACGAGATCGAAGAAATTCCTTCCAGCCATTCACCAATGTGTCCA AATCTGTCCACTCTATTTCTATGTTATAATAGAGGGTTAAGATTTGTTGCAGATTCATTTTTCAAGCAATTGCATGGGCTCATGGTCCTTGATCTGTCTC GCACAGGTATTAAAAATTTGCCAGACTCTGTCTCTGATTTGGTGAGTCTCATTGCATTATTGCTCAAAGAGTGTGAGAAATTAAGACATGTTCCATCATT AAAGAAGCTCAGGGCACTGAAGAGGTTGGATCTCTCTTGGACTACGCTTGAAAAGATGCCGCAAGGAATGGAATGTCTAACCAACCTGAGGTATCTTAGA ATGACTGGATGTGGTGAAAAGGAGTTTCCTAGTGGGATATTACCAAAACTCTCTCACCTGCAAGTCTTTGTACTAGAAGAATATTATCGTCCGATAACAG TTAAAGTAAAGGAAGTAGTATCCTTGAGAAATTTGGAAACTTTGGAATGCCATTTCGAAGGTCTCTCTGACTTCGTGGAGTATCTCAGATCTCGGGATGG GACCCAATCATTAAGCACATACAAAATTTTAGTAGGTATGGTGGAAGCAGATTTTTGGCATCATGGTTATTATTTTCCAAGTAAAACAGTTGGGTTGGGT AATTTGAGTATCAACATAGATAGAGATATTCAAGTCAAGTTCTTAAATGACATTCAAGAACTGGTTTGTAAATGCATCGATGCAAGAAGTTTATGTGATG TTCTGTCATTAGAGAATGCACCTGAACTGGCGGTTATCCATATTGTGAATTGCGATAGCATGGAGAGCTTGGTTTCATCTTCTTGGTTCTGCTCTGCTCC ACCACCATTGCCCTCATATAATGGTTTGTTTTCTGGTCTTAAAGAGTTTTATTGTTATGGATGTAAAAGTATGAAGTTGTTGTTCCCACTTGTGTTGCTG CCAAACCTCGTAAACCTGGAAGTGATTAATGTTGGTGTTTGTGAGAAAATGGAGGAGATAATAGGAACAACAGATGAAGAAAGCAGCACCTCCAATTCCA TCACAGAATTAGAACTCCCAAATTTAATCACTCTGAGATTGCATAAATTACCAGAACTGAAAAGCATTTGTAGTGCAAAACTGACTTTCAATTCCCTTGA AGATATTTGTGTAATGTATTGTGAGAAGTTGAAGAGGATGCCAATTTGTCTTCCGTTGCTTGAAAATGGCCAGCCATCCCCTCCCTTTTTTCTTAGAAGA ATGGAGATATGTCCAGAAGAATGGTGGGAAACAGTAGTGGAGTGGGAGCATCCTAACGCAAAGGATGTCCTTCGTCCTTTTGTGGAGTTTAAGTAG
AA sequence Show only first row Show all	>Potri.019G014308.1 pacid=42773105 polypeptide=Potri.019G014308.1.p locus=Potri.019G014308 ID=Potri.019G014308.1.v4.1 annot-version=v4.1 MGRSDDPFWKEVEDMNDGSMKCKFCGHLFANGTSISRIKWHFSGERGHGVGICGQVPKEVQEAAFLAMRGGYKRHKGIASLSNVNDYAISTCPQEQDNAV LGNLAQGVGPERIHSRLEAANGMEYTGEGSFQHVDRSVSPWRLRVDAHENRGEATPGTDLVDQFADGTWVQIHSALSKEQKLNEISTYLMQEDEDVERLH DGSETIPRTEQVQHLERGSSCERPSINQADEPRGDSSQPTDPLCLDHGRYYNQLCAPSLSKDVIMYDVQNMVRERTEPVEEEGVENSGRLVQHGTGARSS RCLKYNTSETRGVPLPTSSTKPVGRAFEENKKLIWSLLVDDEVPTIGIYGMGGVGKTTILQHIHNELLQKPDICDHVWWVTVSQDFSINRLQNLIAKRFR LDLSSEDDDLYRAAKLSKELMKKQKWILILDDLWNNFELDEVGIPVPLKGCKLIMTTRSETVCHRMACHRKIKVKTVFEGEAWTLFMEKLGRRIAFSPEV EAIAKAVARECAGLPLGIITVARSLRGVDDLPEWRNTLKKLRESEFRDKEVFKLLRFSYDRLGDLALQQCLLYFALFPEDYMIEREELIGYLIDEGIIKG KRRREDAFDEGHTMLNRLENVCLLESARVNYDDNRRVKMHDLIRDMAIQILLENSQYMVKAGAQLKELPDAEEWTENLTRVSLMQNEIEEIPSSHSPMCP NLSTLFLCYNRGLRFVADSFFKQLHGLMVLDLSRTGIKNLPDSVSDLVSLIALLLKECEKLRHVPSLKKLRALKRLDLSWTTLEKMPQGMECLTNLRYLR MTGCGEKEFPSGILPKLSHLQVFVLEEYYRPITVKVKEVVSLRNLETLECHFEGLSDFVEYLRSRDGTQSLSTYKILVGMVEADFWHHGYYFPSKTVGLG NLSINIDRDIQVKFLNDIQELVCKCIDARSLCDVLSLENAPELAVIHIVNCDSMESLVSSSWFCSAPPPLPSYNGLFSGLKEFYCYGCKSMKLLFPLVLL PNLVNLEVINVGVCEKMEEIIGTTDEESSTSNSITELELPNLITLRLHKLPELKSICSAKLTFNSLEDICVMYCEKLKRMPICLPLLENGQPSPPFFLRR MEICPEEWWETVVEWEHPNAKDVLRPFVEFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014308 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014380 [exp]	1.41	0.9014
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014338 [exp]	1.41	0.9048
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014352 [exp]	5.47	0.8292
					Potri.019G014350 [exp]	6.00	0.7077
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014326 [exp]	6.32	0.8016
AT5G18470			Curculin-like (mannose-binding...		Potri.005G015300 [exp]	6.32	0.8328
AT5G36930			Disease resistance protein (TI...		Potri.007G099700 [exp]	6.48	0.8127
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.003G121200 [exp]	7.34	0.7599	DREB64
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014348 [exp]	7.74	0.7980
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014304 [exp]	8.83	0.7857

Compare expression of checked genes

Potri.019G014308 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.