Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 317 / 2e-91 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 254 / 5e-70 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G43730 246 / 8e-68 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43740 246 / 1e-67 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G63020 242 / 4e-66 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G27190 241 / 2e-65 NB-ARC domain-containing disease resistance protein (.1) AT1G12290 239 / 2e-65 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12220 238 / 8e-65 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12210 235 / 6e-64 RFL1 RPS5-like 1 (.1) AT1G51480 233 / 6e-63 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014340 [exp] 2129 / 0 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014328 [exp] 1751 / 0 AT4G27220 283 / 2e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 1647 / 0 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014312 [exp] 1632 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014370 [exp] 1481 / 0 AT4G27220 335 / 2e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014304 [exp] 1387 / 0 AT4G27220 283 / 2e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 1362 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014308 [exp] 1283 / 0 AT4G27220 326 / 1e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014356 [exp] 1265 / 0 AT4G27220 219 / 2e-58 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 145 / 1e-34 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 138 / 2e-32 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 117 / 4e-26 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 116 / 5e-26 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 115 / 2e-25 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028639 [exp] 114 / 2e-25 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 112 / 1e-24 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 112 / 2e-24 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10014922 [exp] 111 / 3e-24 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 110 / 5e-24 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G014322.1 pacid=42773883 polypeptide=Potri.019G014322.1.p locus=Potri.019G014322 ID=Potri.019G014322.1.v4.1 annot-version=v4.1 ATGGAAGGAGTCCCACCGTCTTGTAATGAGGATGATGTCAACTTGACATCGAATCAGTTCGATTTTCAATCACCAGAAGATTCATTCAATATTTCTGAGT TTCTCTCGACGCCACCGGAGTTTCCAGGCAACCAAAGCTTCATGTTATGCAATGATCATGTTGGTCAGAACATGGTGGTGGATAACAATGTGATCAACGA TAGTATTCAACAAACAACTGATCGGTTTCCACCTTCATTTCCTCAAACCATGACAACAATGGGAGATTTAGATGGAACATCATCGTCATGGATCAACCAA AATGAACCAAATTGGCCTCAAGCTCCACCAAGGTGTCAGCCTAATCCTAATTTATTTGATCCTCAATGTGCCAATCCTTTGAGGGACCAGCAATGGACTC ATTATCAGTTACCATTGAGCAATCAAGTGCCTGCGATGTTACCTGTACCTCAACCTCCAATGAATCAACGGCATCAGAACTCCTTTATTCATCAACCTCG GCCGGGACATGGCTATATGACACCGAACGCAACCACTTCTCAACATGGTGGCTTCAATCAATCTGGACCTTCTTCTCCTGCTCCCTGGTCACAGATGGAT AACCTACAAGTCCGAGGATTGCAAAATCAAATTGCTAGGCCAAATGCCTCAAATACTCAACAAGTCGAAACGGTTGGATCAAAGTATCCATTTCGGATTC ATGTTGAATATAGGGCTGATGGTAGCATGAAGTGTAAGTTTTGTCAACGTACATGGGCCAATAAAACTTCCATTTCAAGGTTCAAATGGCATTTATCAGG AGAGGAAGGGCGTGGTGTTGCCATTTGTCGTGGGGTGACTAAAGAAGTTAAAGAAGCAGCCTTTCTAGCTATATGTGGTGGCCACAAAAGACAAAAAATC ACAGCAAGTTCAGTCAATGTTAATGACTGTGGAATTCCAACTTGTCTACAAGAACTAAACATTGAGAATGAAAATACGGGAGGTGTTGGAAGGGTACAAA GAGAAGTTCAGGTTGTAGAACCCGGAGTAGTGGAAGAGAGGATTTCTTCACATGCAATAGCAGGAAACGACGTAGTAAGCATGACCGGAATGAGAGCACA AGAAGATAGAGTTTCCGAAGGGGCACTCGAGAGTAGACTGAGGACAGAACCAGTGGATCGATCGTTGGAACAAAGCAATGCAGTACTTGGCAATATGGCA GGGGGTGCTGGAAGGATACAAGTGGGAGTTCAGGTCATGGAACAAGGTCCCGGAGAAGAGAGAATTCAGTCGCATCTACAAGCGGAAAATGGCATGGAAA ACACTTGTGAAGGATCTTTTCAGCATGATGCATTTGAGACTGTACCAAGAACAGAGCAAGTGCAGCTTCTGGAGCCTCGAGGAGATTCATCCCAATTTTG TCGTGACATTGGAAGATGTTATGATCAACCTTGTGCTCCATCAGTAAACAATGATGCAAATAGGCATGATGCGCAGGACATGGTTAGAGTGAGGACACAA CCAGTGCAAGAAGAGGAGGATGTGGAGAATAGTGGAAGATCAATAGTGCAGGCTGGCGCAGGAGCTAGATCTTCTGAAAGTCTGAAGTACAACAAGACTA GAGGAGTTCCATTACCTACTAGCTCTACAAACCCAGTGGGTCAAGAATTTGAAGAGAATTCGAAGGTGATATGGTCTTTGTTAATGGATGGGGAAGTCTT AAGCATGGGTATTTATGGGATGGGGGGAGTTGGTAAATCCACAATACTTCAACATATCTACAATGAACTTCTACAAAAACCAGATATTTGTGATCATGTT TGGTGGGTGACCGTGTCTCAAGATTTCAGCATTAATAGATTGCAGAATCTTATTGCTAAACATCTTGATCTAGACCTTTCAAGAGAAGATGATGATCTGT ATAGAGCTGCCAAATTGTCAGAAGAACTAATGAAGAAACAAAAATGGATTCTCATTTTAGATGATTTGTGGAACAATTTTGAGCTACACAAAGTGGGAAT TCCTGAGAAGTTAGAAGGATGCAAGCTGATTATAACAACTCGATCAGAAATGATTTGTCATCAGATGGCTTGCCAGCACAAAATCAAAGTGAAGCCACTT TCTAATGGAGAAGCTTGGACTTTGTTCATGGAGAAACTTGGACGTGATGTAGCACTTTCACCAGAAGTGGAAGGAATTGCGAAAGTTGTTGTAAGGGAAT GTGCTGGTTTGCCATTGGGAATTATTACAGTGGCAGGAAGCTTGAGGGGAGTGGATGATCTACATGAGTGGAGGAATACATTGAATAAACTGAAAGAATC AGAATTTAGGGACATGGATGAGAAGGTATTCAAGTTATTGAGGTTTAGTTATGATCAGTTAGGTGATTTAGCACTACAACAATGTCTCTTGTACTGTGCA TTATTTCCTGAAGATGATGATATTGAAAGGGAGGAGTTGATAGGTTATTTGATCGACGAGGGAATAATTAAAGGAAAAAGGAGAAGGGAAGATGCATTTG ACGAGGGCCACACGATGCTTAATAAACTTGAATATGTGTGCCTATTAGAAAGAGCTCAAATGATGTTTGGTTGTAGATGTGTCAAGATGCATGATTTGAT TAGGGACATGGCCATCAAAATACTGCTAGAGAACTCTCAAGGCATGGTCAAAGCAGGTGCACAATTAAAAGAGTTGCCAGATACAGAGGAGTGGACGGAG AAGCTGACGAGAGTTTCATTAATGCAAAACGAGATCAAAGAAATTCCTTCCAGCCATTCACCTAGGTGTCCCTTTCTATCAACTCTATTGCTATGTCGTA ATCGTTGGTTGGGATTTATTTCGGATTCATTTTTCAAGCAATTGCATGGGCTCAAGGTCCTCGATCTGTTTTACACGAGTATTGAAAATTTGCCAGACTC TGTCTCTGATTTGGTGAGCCTCACAGCATTATTGCTCAATGATTGTAAGAAATTAAGACATGTTCCATCATTAGAGAAGCTCACGGCACTGAAGAGGTTG AATCTCTCTCGTACTGCACTTGAAAAGATGCCGCAAGGAATGGAATGCCTAACCAACCTGACGTATCTTAGAATGAATGGATGTGGTGAAAAGGAGTTTC CTAGGGGGATATTACCAAAACTCTCTCACCTGCAAGTCCTTGTACTAGAAGACTTTTTTGATGGAAGTTATGCTCCGATAACAGTTGAAGGAAAGGAAGT AGGATCCTTGAGAAATTTGGAAAGTTTGGAATGCCATTTCGAAGGTTTTTCTGACTTCGTGGAGTATGTCAGATCTTGGGATGGGATCCTATCATTAAGC ACATACAGAATTTTAGTAGGAATGGTGGGTGGATTTATAGGTCAACACATTGAATATTTTCCAAGTAAAACAGTTGGGTTGGGTAATTTGAGTATCAACG GAGATAGAGATTTTCAGGTCAAGTTCTTAAATGGCATTCAAGGATTGATTTGTGGATGCATCGATGCAAGAAGTTTATGTGATGTTTTCTCATTAGAGAA TGCAACTGAACTGAAGCTCATCAGCATTTGGAAATGCCATAACATGGAGAAGCTGTTCCCGCTTGTGTTGCTGCCAAACCTCGTAAACCTGGAAAGGATT GAAGTGATGTTCTGTGAGAAAATGGAGGAGATAATAGGAACAACAGATGAAGAAAGCAACACCTCCAATTCCATCAAGGAAGTCATTCTCCCAAAGTTAA GATTTCTGAAATTGATTGGGTTACCAGAACTGAAAAGCATTTGCAGTGCAAAACTGATTTGCAATTCTATTAAACATATTATTGTAAGGTGGTGTGAGAA GTTGAAGAGGATACCAATTTGTCTTCCGTTGCTTGAAAATGGCCAGCCATCTCCTCCCCCTTCTCTTGAAAATATCTATTCAAGTCCAGAAGAATGGTGG GAGACAGTAGTGGAGTGGGAGCATCCTAATGCAAAGGATGTCCTTCGTCCCTTTGTATGCTACTGA
AA sequence Show only first row Show all	>Potri.019G014322.1 pacid=42773883 polypeptide=Potri.019G014322.1.p locus=Potri.019G014322 ID=Potri.019G014322.1.v4.1 annot-version=v4.1 MEGVPPSCNEDDVNLTSNQFDFQSPEDSFNISEFLSTPPEFPGNQSFMLCNDHVGQNMVVDNNVINDSIQQTTDRFPPSFPQTMTTMGDLDGTSSSWINQ NEPNWPQAPPRCQPNPNLFDPQCANPLRDQQWTHYQLPLSNQVPAMLPVPQPPMNQRHQNSFIHQPRPGHGYMTPNATTSQHGGFNQSGPSSPAPWSQMD NLQVRGLQNQIARPNASNTQQVETVGSKYPFRIHVEYRADGSMKCKFCQRTWANKTSISRFKWHLSGEEGRGVAICRGVTKEVKEAAFLAICGGHKRQKI TASSVNVNDCGIPTCLQELNIENENTGGVGRVQREVQVVEPGVVEERISSHAIAGNDVVSMTGMRAQEDRVSEGALESRLRTEPVDRSLEQSNAVLGNMA GGAGRIQVGVQVMEQGPGEERIQSHLQAENGMENTCEGSFQHDAFETVPRTEQVQLLEPRGDSSQFCRDIGRCYDQPCAPSVNNDANRHDAQDMVRVRTQ PVQEEEDVENSGRSIVQAGAGARSSESLKYNKTRGVPLPTSSTNPVGQEFEENSKVIWSLLMDGEVLSMGIYGMGGVGKSTILQHIYNELLQKPDICDHV WWVTVSQDFSINRLQNLIAKHLDLDLSREDDDLYRAAKLSEELMKKQKWILILDDLWNNFELHKVGIPEKLEGCKLIITTRSEMICHQMACQHKIKVKPL SNGEAWTLFMEKLGRDVALSPEVEGIAKVVVRECAGLPLGIITVAGSLRGVDDLHEWRNTLNKLKESEFRDMDEKVFKLLRFSYDQLGDLALQQCLLYCA LFPEDDDIEREELIGYLIDEGIIKGKRRREDAFDEGHTMLNKLEYVCLLERAQMMFGCRCVKMHDLIRDMAIKILLENSQGMVKAGAQLKELPDTEEWTE KLTRVSLMQNEIKEIPSSHSPRCPFLSTLLLCRNRWLGFISDSFFKQLHGLKVLDLFYTSIENLPDSVSDLVSLTALLLNDCKKLRHVPSLEKLTALKRL NLSRTALEKMPQGMECLTNLTYLRMNGCGEKEFPRGILPKLSHLQVLVLEDFFDGSYAPITVEGKEVGSLRNLESLECHFEGFSDFVEYVRSWDGILSLS TYRILVGMVGGFIGQHIEYFPSKTVGLGNLSINGDRDFQVKFLNGIQGLICGCIDARSLCDVFSLENATELKLISIWKCHNMEKLFPLVLLPNLVNLERI EVMFCEKMEEIIGTTDEESNTSNSIKEVILPKLRFLKLIGLPELKSICSAKLICNSIKHIIVRWCEKLKRIPICLPLLENGQPSPPPSLENIYSSPEEWW ETVVEWEHPNAKDVLRPFVCY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014322 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	1.00	0.8927
AT1G61190			LRR and NB-ARC domains-contain...		Potri.019G014358 [exp]	2.82	0.8653
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014324 [exp]	3.87	0.8525
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014340 [exp]	4.47	0.8441
AT4G10780			LRR and NB-ARC domains-contain...		Potri.019G014372 [exp]	5.47	0.8427
AT5G13590			unknown protein		Potri.010G213800 [exp]	15.19	0.7785
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136500 [exp]	15.49	0.8033
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.005G166500 [exp]	17.23	0.7739
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145540 [exp]	25.37	0.7891
					Potri.019G014316 [exp]	25.41	0.7661

Compare expression of checked genes

Potri.019G014322 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.