Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10780 128 / 2e-30 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 127 / 6e-30 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43730 123 / 1e-28 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G27220 119 / 1e-27 NB-ARC domain-containing disease resistance protein (.1) AT1G15890 115 / 2e-26 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43740 115 / 2e-26 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61190 115 / 3e-26 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G61300 114 / 5e-26 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 114 / 6e-26 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G61180 113 / 1e-25 LRR and NB-ARC domains-containing disease resistance protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014336 [exp] 1023 / 0 AT4G27220 320 / 2e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014356 [exp] 835 / 0 AT4G27220 219 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014324 [exp] 792 / 0 AT4G27220 271 / 1e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014358 [exp] 685 / 0 AT1G61190 65 / 1e-10 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014340 [exp] 541 / 3e-176 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014328 [exp] 535 / 4e-173 AT4G27220 283 / 2e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014322 [exp] 484 / 5e-155 AT4G27220 319 / 3e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.T012900 [exp] 421 / 8e-139 AT4G27220 212 / 4e-59 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014380 [exp] 427 / 4e-135 AT4G27220 302 / 5e-87 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 80 / 6e-15 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 72 / 1e-12 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10006794 [exp] 70 / 2e-12 AT3G14470 264 / 2e-78 NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 69 / 1e-11 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 68 / 2e-11 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 67 / 6e-11 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 65 / 1e-10 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 63 / 1e-09 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 63 / 1e-09 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 61 / 3e-09 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.019G014332.1 pacid=42773556 polypeptide=Potri.019G014332.1.p locus=Potri.019G014332 ID=Potri.019G014332.1.v4.1 annot-version=v4.1 ATGGAAGGAGTCCCACCGTCTTGTAATGAGGATGATGTCAACTTGACATCGAATCAGTTCGATTTTCAATCACCAGAAGATTCATTCAATATTTCTGAGT TTCTCTTGCCGGCAGACAACCAAGGCTCCATATCATGCAATGATCAAGGTGGACAGACAACTGATCAGTTTCCACCTTCATTTCCTCAAACCATGACAAC AATGGGAGATTTAGATGGAACATCATCGTCATGGATCAACCAAAATGAACCAAATTGGCCTCAAGCTCCATCAAGGGACCAACAATGGACTGATTATCAG TTACCAATTATGAGCAATCAAGTGCCTGCGATGAACCAATGGCATCAGAACTCCAATATTCCTCAACCTTATCCGAGACATGGCTATATAACACCGAACG CAACCACTTCACAACATGGTGGCTTCAATCAACCTGGACCTTCTTTTCCTGCTCCCCGGATTCAACATTTTCCTAATCAAGGACAAGTCGATCAAGCTTT TGCAATTCCTAATATAGACAATATGCAACAGGAGAACTTCGTGCCTCAAAACTTTGACAACTCTACTAGGTCACAGATGGATAACCTCCAAGTCCGAGGA TTGCAAAATCAAACTGCTACGCCAAATGCCTCGAATCCTGGCCTTGGCACTTCCCTGCAAAGTCAAAATAGGGGTTTAAATACTCAACAAGTTGAAATGG TTAGATCAAAGGATCCATTTTGGAATTATATTGAAGATAGGACTGATGGTAGCATGAAGTGTACGTTTTGTCCACATACATTTGCCAATAAAACCTCCAT TTCAAGGATCAAATGGCATTTATCAGGAGAGGAAGGGCATAATGTTGCCATTTGTCTTGGGGTGCCTAAAGAAGTTCAAGAAGCAGCCTTTCTAGCTGCT TACAAAAGACAGAAAATCACAGCAAGTTCAGCCAATGTTAATGATTGTGGAATTTCAACTTGTCCACAGGAACAAAACATTGAGATTAACATGGTAGGAG TAGGGGAACAGAGGATTTCTTCACAAGCAATAGCAGGAAACGACGAAGTAAGCATGACGGGAATGAGAGCACAAGAAGATAGAGTTTCCAAAGGGGCACT CGAGAGCAGACTGAGGACAGAACCAGCGGATCGAGCGTTGGAACAAAGCAATGCAGTACTTGGCAATTTGGCAGGGGGTGCTGGAAGGATACAAGCGGGA GTTCAGGGGGTGCTGGAACAAGGTGCCGGGGAAGAGAGAATTAATCGGGTTAGACAGAGGACAGAACCAGTGGAGGAGGATGTGGAGAATAGTCGAAGAT CAGTGCAGGTTGGTGCTGGAGCTAGATCTTCTGAAAGTCTGAAAGACAACAAGACTAGAGGAGTTCCACTACCTACTAGCTCTACAAAGCCATTGGGTCA AGCATTCGAAGAGAATACGAAGGTGATACGGTCTTTGTTAATGGATGGGGAAGTCTTAAGCATGGGTATTTATGGGATGGGGGGAGTTGGTAAATCCACA ATACTTCAACATATCTATAATGAGTTTCTACAAAAACCAGATATTTGTAATCATGTTTGGTGGGTGACCGTATCTCAAGATTTCAGCATTAACAGATTGC AGAATCTTATTGCTAAACATCTTGATCTAGACCTTTCAAGAGAAGATGATGATCTACATAAAGCTGCTAAATTGTCAGAAAAACTAAAGAAGAAACAAAA ATGGATTCTCATTTTAGATGATTTGTGGAACAATTTTGAGCTACACAAAGTGGGAATTCCTGAAAAGTTAGAAGGATGCAAGCTGATTATAACAACTCGA TCAGAAATGATTTGTCATCGGATGGCTTGCCAGCACAAAATCAAAGTGAAGCCACTTTCTGATGGAGAAGCTTGGACTTTGTTCATGGAGAAACTTGGAC ATGACATAGCACTTTCACCATATATGGAAAGAATTGCGAAAGCTGTTGCAAGGGAATGTGATGGTTTGCCATTGGGAATTATTACAGTGGCAGGAAGCTT GAGGGGAGTGGATGATCTACATGAGTGGAGGAATACATTGAAGAAATTGAAAGAATCAGAATTTAGAGACAATGAAGTATTCAAGTTATTGAGGTTTAGT TATGATCGGTTAGGTGATTTAGCACTACAACAATGTCTCTTGTACTGTGCATTATTTCCTGAAGATCATGTGATTGAAAGGATGCAGTTGATAGCTTAG
AA sequence Show only first row Show all	>Potri.019G014332.1 pacid=42773556 polypeptide=Potri.019G014332.1.p locus=Potri.019G014332 ID=Potri.019G014332.1.v4.1 annot-version=v4.1 MEGVPPSCNEDDVNLTSNQFDFQSPEDSFNISEFLLPADNQGSISCNDQGGQTTDQFPPSFPQTMTTMGDLDGTSSSWINQNEPNWPQAPSRDQQWTDYQ LPIMSNQVPAMNQWHQNSNIPQPYPRHGYITPNATTSQHGGFNQPGPSFPAPRIQHFPNQGQVDQAFAIPNIDNMQQENFVPQNFDNSTRSQMDNLQVRG LQNQTATPNASNPGLGTSLQSQNRGLNTQQVEMVRSKDPFWNYIEDRTDGSMKCTFCPHTFANKTSISRIKWHLSGEEGHNVAICLGVPKEVQEAAFLAA YKRQKITASSANVNDCGISTCPQEQNIEINMVGVGEQRISSQAIAGNDEVSMTGMRAQEDRVSKGALESRLRTEPADRALEQSNAVLGNLAGGAGRIQAG VQGVLEQGAGEERINRVRQRTEPVEEDVENSRRSVQVGAGARSSESLKDNKTRGVPLPTSSTKPLGQAFEENTKVIRSLLMDGEVLSMGIYGMGGVGKST ILQHIYNEFLQKPDICNHVWWVTVSQDFSINRLQNLIAKHLDLDLSREDDDLHKAAKLSEKLKKKQKWILILDDLWNNFELHKVGIPEKLEGCKLIITTR SEMICHRMACQHKIKVKPLSDGEAWTLFMEKLGHDIALSPYMERIAKAVARECDGLPLGIITVAGSLRGVDDLHEWRNTLKKLKESEFRDNEVFKLLRFS YDRLGDLALQQCLLYCALFPEDHVIERMQLIA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10780			LRR and NB-ARC domains-contain...		Potri.019G014332 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014356 [exp]	1.00	0.9241
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014324 [exp]	3.00	0.8985
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014364 [exp]	5.00	0.8944
AT5G17680			disease resistance protein (TI...		Potri.017G103701 [exp]	5.65	0.8880
AT4G21865			unknown protein		Potri.008G172000 [exp]	9.69	0.9137
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014328 [exp]	13.03	0.8843
AT1G61190			LRR and NB-ARC domains-contain...		Potri.019G014358 [exp]	13.85	0.8595
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G025300 [exp]	15.29	0.8918
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Potri.006G139400 [exp]	16.00	0.8958
AT3G17100	bHLH	bHLH147, AIF3	sequence-specific DNA binding ...		Potri.008G103500 [exp]	17.83	0.8368

Compare expression of checked genes

Potri.019G014332 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.