Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 317 / 3e-91 NB-ARC domain-containing disease resistance protein (.1) AT4G27190 267 / 5e-74 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 245 / 3e-67 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12280 242 / 4e-66 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 241 / 8e-66 Disease resistance protein (CC-NBS-LRR class) family (.1) AT4G26090 241 / 1e-65 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT5G05400 240 / 1e-65 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 234 / 2e-63 RFL1 RPS5-like 1 (.1) AT1G61180 234 / 2e-63 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT1G51480 232 / 1e-62 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014356 [exp] 1755 / 0 AT4G27220 219 / 2e-58 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014312 [exp] 1395 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014324 [exp] 1378 / 0 AT4G27220 271 / 1e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 1327 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014304 [exp] 1301 / 0 AT4G27220 283 / 2e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 1279 / 0 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014340 [exp] 1278 / 0 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014370 [exp] 1254 / 0 AT4G27220 335 / 2e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014328 [exp] 1251 / 0 AT4G27220 283 / 2e-79 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 151 / 2e-36 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 146 / 4e-35 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 129 / 7e-30 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 125 / 1e-28 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 125 / 2e-28 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10014922 [exp] 118 / 1e-26 AT3G07040 523 / 1e-171 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 114 / 4e-25 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 114 / 5e-25 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10007261 [exp] 114 / 5e-25 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10018937 [exp] 108 / 1e-23 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G014336.1 pacid=42774100 polypeptide=Potri.019G014336.1.p locus=Potri.019G014336 ID=Potri.019G014336.1.v4.1 annot-version=v4.1 ATGGAAGGAGTCCCACCGTCTTGTAATGAGGATGATGTCAACTTGACATCGAATCAGTTCGATATTCAATCACCAGAAGATTCATTCAATATATCTGAGC TTCTCTTGCCGGCAGACAACCAAGGCTCCATATTATACAATGATCAAGGTGGACAGAACATGGTGGTGGATAACAATGTGATCAACGATAGTATTCAACA AACAACTCAGTTTCCACCTTCATTTCCTCAAACCATAGTGAGTGCAATGGAAGGAGTCCCACCGTCTTGTAATGAGGATGATGTCAACTTGACATCGAAT CAGTTCGATATTCAATCACCAGAAGATTCATTCAATATTTCTGAGTTTCTCTTCAGGCCGGCAGACAACCAAGGCTCCATATCATGCAATGATCAAGGTG GACAGACAACTGATCAGTTTCCACCTTCATTTCCTCAAACCATGACAACAATGGAAGTTTTAGATGGAACATCATCGTCATGGATCAACCAAAATGAACC AAATTGGCCTCAAGCTCCATCAAGGTATCTGCCTAATTTATTTGATCCTCAATGTGCCAATCCTTTGAGGGACCAACAAAGGACTAATTATCAGTTACCA ATGAGCAATCAAGTGCCTGCGATGAATCAATGGCATCAGTACTCCAATACTCATCAACCACAGCCGGGACATTGCTATATGACATCGAACGCAACCACTT CAGAACTTTGTGGCAACCACATTCAACCTGGACCTTCTTTTCCTGCTCCCCGGAGTCAATATTTTTCTAATCAAGCTGCTGTAATTCCTAACATAGACAA TATACAACAAGAGAACTTCGTGCCTCGGCACTTTGGCAACTCTACTAGGTCACAGATGGATAACCTCAAACTCAGAGGATTGCAAAATCAAACTACTAGG CCAAATGCCTCAAATCCTGGCCCTGACACTTCCCTGCAAAGTCAAATTAGGGGTTTAAATACTCAACAAGTCGGATATGGTTCATTTCGGAATTATGTTG AAGAAGGGGCTGATGATGGTAGAATGAAGTGTAAGTTTTGTCCACATACATATGCCATTAAAACTTCCATTTCAAGGATCAAATGGCATTTGTCAGGAGA AGAAGGGCATGGTGTTGCCATTTGTCGTGGGGTGCCTAAAGAAGTTCAAGAAGTAGCCTTTCTAGCTGCTAACAAAAGACAGAAAATCACAGCAAGTTCG GTCAATGTTAATGATTGTGGAATTTCACAAGCAATAGCAGGAAACGACGAAGTAAGCATGACGGGAATGAGAGCACAAGAAGGTAGAGTTTCCAAAGGGG CACTCGAGAGCAGACTGAGGACAGAACCAGCGGATCGAGCGTTGGAACAAAGCAATGCAGTACTTGGCAATTTGGTAGGGGGTGCTGGAAGGATACAAGC GGGAGTTCAGGGGGTGCTGGAACAAGGTGCCGGGGAAGAGAGAATTAATCGGGTTAGACAGAGGACAGAACCAGTGGAGGAGGATGTGGAGAATAGTCAA AGATCAGTGCAGGTTGGTGCTGGAGCTAGATCTTCTGAAAGTCTGAAATACAACAAGACTAGAGGAGTTCCATTACCTACTAGCTCTACAAAGCCAGTGG GTCAAGCATTCGAAGAGAATACGAAGGTGATATGGTCTTTCTTAATGGATGGGGATGTCTCAATCATTGGCATTTATGGGATGGGAGGAGTTGGTAAATC CAAAATACTGAAAGATATCTATAATGAGCTTCTACAACAACCAAATATTTGTGATCATGTTTGGTGGGTGAATGTATCTCAAGATTTCAGCATTAACCGA CTGCAGAATCTTATTGCTGAACATCTTGATCTAGATCTTTCAAGAAAAAATGATGAACTGCATAGAGCTTCTGAATTGTTAGAAAAACTAAGCAAGAAAC AAAAATGGATTCTCATTTTAGATGATTTGTGGAACGATTTTACTCTTGACAGAGTGGGAATTCCTAAGAAGTTGAAAGGATGCAAGCTGATTTTGACAAC TCGATCAGAAATAGTTTGTCATGGAATTGGTTGCGATCACAAAATCCAAGTGAAGCCACTTTCCGAGGGAGAAGCTTGGACTTTGTTCAAGGAGAATCTT GAACATGACATAACACTTTCATCAAAAGTGGAAGGAATTGCGAAAGCTATTGCAAGGGAATGTGATGGTTTGCCATTGGGAATTATTACAGTGGCAGGAA GCTTGAGGGGAGTGGATGACCTCCATCAGTGGAGGAATACATTGACGAAATTGAGAGAATCAGAATTTAGGGACATGGATGAGAAGGTATTCAAGTTATT GAGGTTTAGTTATGATCGGTTAGGTGATTTAGCACTACAACAATGTCTCTTGTACTGTGCATTATTTCCCGAAGATAGTGAGATTGAAAGGGAGGAGTTG ATAGGTTATTTGATCGATGAGGGAATAATTAAAAGAAAGAGGAGCAGGGGAGATGCATTTGATGAGGGCCACACGATGCTTAATAAACTTGAAAATGTCT GTCTATTGGAAAGTGCTAATATGTATTATGTTGCTCGTAGACGTGTCAAGATGCATGACTTGATTAGGGACATGGCCATCCAAATACTGCTAGACAACTC TCAAGGCATGGTCAAAGCAGGTGCGCAATTAAAAGAGTTGCCAGATGCAGAGGAGTGGACGGAGAATCTCACACGAGTCTCACTAATACGAAACAAGATC AAAGAAATTCCTTCCAGCCATTCACCAATGTGTCCCTATCTATCAACTCTACTTCTATGTCAAAATCATTGTTTGCGATTCATTGCAGATTCATTTTTCA AGCAATTGCATGGGCTCAAGGTCCTCGATCTGTCTGGGACCAGTATTGAAAATTTGCCAGACTCTGTCTCTGATTTGGTGAGTCTCACTGCATTATTGCT CAACGAGTGTGAGAACTTACGTCATGTTCCATCATTAGAGAAGCTCAGGGCACTGAAGAGGTTGGATCTCTATTGGACTCCGCTTAAAAAGATGCCGCAA GGAATGGAATGCCTAACCAACCTGAGGTATCTTAGAATGAATGGATGTGGTGAAAAGGAGTTTCCCAGTGGGATATTACCAAAACTCTCTCACCTGCAAG TCTTTGTACTAGAAGAGTTAATGGGGCAATTTTCTGATTATGCTCCGATAACAGTTAAAGGAAAGGAAGTACGATCCTTGAGAAATTTGGAAAGTTTGGA ATGCCATTTCGAAGGTTTCTCTGACTTCGTGGAGTATCTCAGATCTCGGGATGGGATCCAATCATTAAGCAAATATACAATTTTAGTAGGAATGATGGAT GATGGTTATTGGTTTGGCACTTATCATTTTCCAAGTAAAACAGTTGGGTTGGGTAATTTGAGTATCAACGGAGATGGAGATTTTCAGGTCAAGTTCTTAA ATGGCATTCAAGGACTGGTTTGTGAATGCATCGACGCAAGAAGTTTATGTGATGTTTTGTCATTAGAGAAAGCAACTGAACTTGAGCTCATCAGCATTCA GGGTTGCAATAGCATGGAGAGCTTGGTTTCATCTTCTTGGTTCTGCTATGCTCCACCACGATTGCCATCATATAATGGTACGTTTTCTGGTCTTAAAGAG TTTTATTGTTATGGATGTGAAAGTATGAAGAAGCTGTTCCCGCTTGTGCTGCTGCCAAACCTCGGAAACCTGGAAAGGATTGTTGTTGAGGATTGTGAGA AAATGGAGGAGATAATAGGAACAACAGATGAAGAAAGCAGCACCTACAATTCCATCATGGAATTAATATTCCCAAAGTTAAGATCTCTGAGATTGTTTGA ATTACCAGAACTGAAAAGCATTTGCAGTGCAAAACTGATTTGCAATTCTCTTAAAGATATTGATGTAGAGGATTGTCAGAAGCTGAAGAGGATGCCCATT TGTCTTCCGTTGCTTGAAAATGGCCAGCCATCTCCTCCCCCTTCTCTTAAAGAAATCACGGTATATCCAGAAGAATGGTGGGAGACAGTAGTGGAGTGGG AGCATCCTAATGCAAAGGATGTCCTTCGTCCCTTTGTACACTTTGTGTAG
AA sequence Show only first row Show all	>Potri.019G014336.1 pacid=42774100 polypeptide=Potri.019G014336.1.p locus=Potri.019G014336 ID=Potri.019G014336.1.v4.1 annot-version=v4.1 MEGVPPSCNEDDVNLTSNQFDIQSPEDSFNISELLLPADNQGSILYNDQGGQNMVVDNNVINDSIQQTTQFPPSFPQTIVSAMEGVPPSCNEDDVNLTSN QFDIQSPEDSFNISEFLFRPADNQGSISCNDQGGQTTDQFPPSFPQTMTTMEVLDGTSSSWINQNEPNWPQAPSRYLPNLFDPQCANPLRDQQRTNYQLP MSNQVPAMNQWHQYSNTHQPQPGHCYMTSNATTSELCGNHIQPGPSFPAPRSQYFSNQAAVIPNIDNIQQENFVPRHFGNSTRSQMDNLKLRGLQNQTTR PNASNPGPDTSLQSQIRGLNTQQVGYGSFRNYVEEGADDGRMKCKFCPHTYAIKTSISRIKWHLSGEEGHGVAICRGVPKEVQEVAFLAANKRQKITASS VNVNDCGISQAIAGNDEVSMTGMRAQEGRVSKGALESRLRTEPADRALEQSNAVLGNLVGGAGRIQAGVQGVLEQGAGEERINRVRQRTEPVEEDVENSQ RSVQVGAGARSSESLKYNKTRGVPLPTSSTKPVGQAFEENTKVIWSFLMDGDVSIIGIYGMGGVGKSKILKDIYNELLQQPNICDHVWWVNVSQDFSINR LQNLIAEHLDLDLSRKNDELHRASELLEKLSKKQKWILILDDLWNDFTLDRVGIPKKLKGCKLILTTRSEIVCHGIGCDHKIQVKPLSEGEAWTLFKENL EHDITLSSKVEGIAKAIARECDGLPLGIITVAGSLRGVDDLHQWRNTLTKLRESEFRDMDEKVFKLLRFSYDRLGDLALQQCLLYCALFPEDSEIEREEL IGYLIDEGIIKRKRSRGDAFDEGHTMLNKLENVCLLESANMYYVARRRVKMHDLIRDMAIQILLDNSQGMVKAGAQLKELPDAEEWTENLTRVSLIRNKI KEIPSSHSPMCPYLSTLLLCQNHCLRFIADSFFKQLHGLKVLDLSGTSIENLPDSVSDLVSLTALLLNECENLRHVPSLEKLRALKRLDLYWTPLKKMPQ GMECLTNLRYLRMNGCGEKEFPSGILPKLSHLQVFVLEELMGQFSDYAPITVKGKEVRSLRNLESLECHFEGFSDFVEYLRSRDGIQSLSKYTILVGMMD DGYWFGTYHFPSKTVGLGNLSINGDGDFQVKFLNGIQGLVCECIDARSLCDVLSLEKATELELISIQGCNSMESLVSSSWFCYAPPRLPSYNGTFSGLKE FYCYGCESMKKLFPLVLLPNLGNLERIVVEDCEKMEEIIGTTDEESSTYNSIMELIFPKLRSLRLFELPELKSICSAKLICNSLKDIDVEDCQKLKRMPI CLPLLENGQPSPPPSLKEITVYPEEWWETVVEWEHPNAKDVLRPFVHFV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014336 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014356 [exp]	2.00	0.9133
					Potri.019G014314 [exp]	2.00	0.8858
AT1G61190			LRR and NB-ARC domains-contain...		Potri.019G014358 [exp]	3.46	0.8718
AT3G05345			Chaperone DnaJ-domain superfam...		Potri.005G031466 [exp]	4.89	0.8577
					Potri.019G014316 [exp]	5.83	0.8299
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Potri.004G095600 [exp]	9.79	0.8395
AT4G21920			unknown protein		Potri.004G015900 [exp]	10.48	0.8651
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G094900 [exp]	13.41	0.8283
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	14.69	0.8529
AT2G24260	bHLH	LRL1, bHLH066	LJRHL1-like 1 (.1)		Potri.006G186600 [exp]	14.89	0.8117

Compare expression of checked genes

Potri.019G014336 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.