Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 317 / 2e-92 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 276 / 4e-78 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12290 264 / 2e-74 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12280 265 / 3e-74 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12220 258 / 4e-72 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G12210 256 / 3e-71 RFL1 RPS5-like 1 (.1) AT5G63020 254 / 1e-70 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43730 247 / 1e-68 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G61310 248 / 2e-68 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G47250 247 / 2e-68 LRR and NB-ARC domains-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014308 [exp] 1916 / 0 AT4G27220 326 / 1e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 1757 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014304 [exp] 1693 / 0 AT4G27220 283 / 2e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014380 [exp] 1646 / 0 AT4G27220 302 / 5e-87 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 1474 / 0 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014328 [exp] 1448 / 0 AT4G27220 283 / 2e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014312 [exp] 1403 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014340 [exp] 1396 / 0 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014370 [exp] 1313 / 0 AT4G27220 335 / 2e-99 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 136 / 3e-32 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 132 / 5e-31 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 127 / 2e-29 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 123 / 6e-28 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 120 / 4e-27 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 117 / 2e-26 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 114 / 2e-25 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 112 / 9e-25 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 107 / 3e-24 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 108 / 1e-23 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G014346.1 pacid=42773099 polypeptide=Potri.019G014346.1.p locus=Potri.019G014346 ID=Potri.019G014346.1.v4.1 annot-version=v4.1 ATGGGTAGATCAGATGATCCGTTTTGGAAGGAAGTTGAAGATATGAATGATGGAAGCATGAAGTGCAAGTTTTGTGGGCATTTATTTGCCAATGGCACTT CCATTTCGAGGATCAAATGGCATTTATCAGGAGAGAGAGGGCATGGTGTTGGCATTTGTGGTCAAGTGCCTGAAGAAGTTCAAGAAGCAGCCTTTCTAGC TATGCATGTTGGCAACAAAAGACATAAAAGCATAGCAAGTTCAAGCAATGTTGACATTTCCACCTGTCCACAAGAACAAGACAATGCAGTACTTGGTAAT TTGGCACAAGGTGTTGGGCCTGAGAGAATTCATTCGCGTTTAGAAGCGGCAAGTGGCATGGAATACACTGGTGAAGGATCTTTTCATCATGTTGACAGAA GTGTCTCTCCTTGGAGACTCAGAGTTGATGCTCATAAGAATAGAGGAGAAGCAACACCAGTAACAGATTTAGTGGATCAATTTGCTGATGGTACTTGGGT TCAGATACACTCTGCCCTTTCAAAGGAGCAGAAGCTGAATGCAATCTCTACCTATTTAATGCTGGAAGAGGACGATGTGGAGCGTCTGCGTGATGGATTT GAAACTATACCGAGAACAGAACAAATGCAGCATCTGGAGAGAGTTATCTCTTGTGAAAGGCCATCAATTAATCAAGCTGATGAGCCTCGAGGAGATTCAT CCCAACCAACAGATCCATTGTGTCTTGACCATGGAAGATATTATCATCAACTCTGTTCACCTTCACTAAGCAAAGATGTCTTTATGTATGATGTGCAGAA CATGGTTAGAGTGAGGACAGAACCAGTAGAGGAGGAGGGTGTGGAGAATAGTGGAAGATTAGTGCAGCATGGCGCAGGAGCTAGATCTTCTAGATGTCTT AAATACAACACAAGTGAGACTAGAGGAGTTCCATTACCTACTAGCTCTAAAAAGCTAGTGGGTCGAGCATTTGAAGAGAATACGAAGGTGATATGGTCTT TGTTAATGGATGATGAAGTCTCAATCATTGGCATTTACGGGATGGGGGGAGTTGGTAAAACAACAATACTGCAACACATCCATAATGAGCTTCTACGAAG ACTGGACATTTGTGATAATGTTTGGTGGGTGACTGTGTCTCAAGATTTCAGCATTAATACATTGCAGAATCGTATTACTAAATGTCTTGATCTAGAATTT TCAAGGGAAGTTGATGATTTGCATAGAGCTGCCAACTTGTCAGAAGAACTAAAGACGAAACAAAAATGGATTCTTATTTTAGATGATTTGTGGAACAATT TTGAACTTGACAAAGTGGGAATTCCTGTCCCGTTGAAAGGATGCAAGCTGATTATGACAACTCGATCAGAAACAGTTTGTCATCAGATGGCTTGCCACCA CAAAATCAAGGTGAAGCCACTTTCCGAGGGAGAAGGTTGGACTTTGTTCATGGAAAAACTTGGAGGTGGCATAACACTTTCACCAGAAGTGGAAGGAATT GCGAAAGCTGTTGCAAGGGAATGTGCTGGTTTGCCTTTGGGAATTATTATAATGGCAAGAAGCTTGAGGGGAGTGAATGACCTACATGAGTGGAGAAATA CATTGAAGAAATTGAGAGCATCAGAATTTAGGGACACAGAAGTATTCAAGTTATTGAGGTTTAGTTATGATTGGTTAGGTGATTTAGCACTACAACAATG TCTCTTGTACTGTGCATTATTTCCTGAAGATTATATGATTGAAAGGGAGGAGTTGATAGATTATTTGATCGACGAGGGAATAATTAAAGGAAAGAGAAGA AGGGAAGATGCATTTGATGAGGGCCACGCGATGCTTAATAGACTTGAATATGTCTGCCTATTGGAAAGTGCTCAAATGGATTATGATGATAGTAGACGTG TCAAGATGCATGACTTGATTAGGGACATGGCCATCCAAATACTGCTAGAGAACTCTCAATACATGGTTAAAGCAGGTGCACAATTAAAAGAGTTGCCAGA TGTAGAGGAGTGGACGGAGAATCTGACGAGAGTTTCACTAATGCAAAACGAGATCGAAGAAATTCCTTCCAGCCATTCACCAATGTGTCCAAATCTGTCC ACTCTATTTCTATGTGATAATAAAGGGCTGGGATTTGTTGCGGATTCATTTTTCAAGCAATTGCATAGGCTCATGGTCCTTGATCTGTCTCGCACAGGTA TTAAAAATTTGCCAGACTCTGTTTCTGATTTGGTGAGTCTCACTGCATTATTGCTCAATTATTGTGAGAACTTAAGACATGTTCCATCATTAAAAAAGCT CAAGGCACTGAAGAGGTTGGATCTCTCTCATACTACGCTTGAAAAGATGCCGCAAGGAATGGAATGCCTAACCAACCTAGGGTATCTTAGAATGAATGGA TGTGGTGAAAAGGAGTTTCCTAGTGGGATATTACCAAAACTCTCTCACCTGCAAGTCTTTGTACTAGACGAATATTATCGTCCGATAACAGTTAAAGTAA AGGAAGTTGTATCCTTGAGAAATTTGGAAACTTTGGAATGCCATTTCGAAGGTCTCTCTGACTTCGTGGAGTATCTCGGATCTCGGGATAAGACCCAATC ATTAAGCACATACAGAATTTTAGTAGGAATGGTGGATGAAGATTTTTGGCAATACAGTGATTATTCTCCAAGTAAAACAGTTGGGTTGGGTAATTTGAGT ATCAACAGAGATAGAGATTTTCAAGTCAAGTTCTTAAATGACATTCAAGAACTGGTTTGTGAAAGCATCGATGCAAGAAGTTTATGTGATGTTCTGTCAT TAGAGAATGCACCTGAATTGGTGGTTATCCAAATTTACGATTGCGATAGCATGGAGAGCTTGGTTTCATCTTCTTGGTTCTGCTCTGCTCCACCACCATT GCCATCATATTATGGTATGTTTTCTGGTCTTAAAGAGTTTTATTGTAGTGGATGTAAGAGTATGAAGAAGCTGTTCCCGCTTGTGCTGCTGCCAAACCTC GTAAACCTGGAAAGGATTGAAGTGATGCTCTGTAAGAAAATGGAGGAGATAATAGGAACAACAGATGAAGAAAGCACCACCTCCAATTCCATCACGGGAT TCATTCTCCCAAAGTTAAGAACTCTGAGACTGAGATATTTACCAGAACTTAAAAGCATTTGTAGTGCAAAACTGATTTGCAATTCTCTTGAAGATATTAC TGTAACGTTTTCTAAGAAGCTGAAGAGGATGCCAATTTGTCTTCCGTTGCTTGAAAATGACAAGCCATCTCCTCCCCTTTCTCTAAGAATAATGTATATA GAACCAAAAGAATGGTGGGAGACAGTAGTGGAGTGGGAGCATCCTAACGCAAAGGATGTCCTTCGTCCCTTTGTAAAGTTTGGGTTAGTTTGA
AA sequence Show only first row Show all	>Potri.019G014346.1 pacid=42773099 polypeptide=Potri.019G014346.1.p locus=Potri.019G014346 ID=Potri.019G014346.1.v4.1 annot-version=v4.1 MGRSDDPFWKEVEDMNDGSMKCKFCGHLFANGTSISRIKWHLSGERGHGVGICGQVPEEVQEAAFLAMHVGNKRHKSIASSSNVDISTCPQEQDNAVLGN LAQGVGPERIHSRLEAASGMEYTGEGSFHHVDRSVSPWRLRVDAHKNRGEATPVTDLVDQFADGTWVQIHSALSKEQKLNAISTYLMLEEDDVERLRDGF ETIPRTEQMQHLERVISCERPSINQADEPRGDSSQPTDPLCLDHGRYYHQLCSPSLSKDVFMYDVQNMVRVRTEPVEEEGVENSGRLVQHGAGARSSRCL KYNTSETRGVPLPTSSKKLVGRAFEENTKVIWSLLMDDEVSIIGIYGMGGVGKTTILQHIHNELLRRLDICDNVWWVTVSQDFSINTLQNRITKCLDLEF SREVDDLHRAANLSEELKTKQKWILILDDLWNNFELDKVGIPVPLKGCKLIMTTRSETVCHQMACHHKIKVKPLSEGEGWTLFMEKLGGGITLSPEVEGI AKAVARECAGLPLGIIIMARSLRGVNDLHEWRNTLKKLRASEFRDTEVFKLLRFSYDWLGDLALQQCLLYCALFPEDYMIEREELIDYLIDEGIIKGKRR REDAFDEGHAMLNRLEYVCLLESAQMDYDDSRRVKMHDLIRDMAIQILLENSQYMVKAGAQLKELPDVEEWTENLTRVSLMQNEIEEIPSSHSPMCPNLS TLFLCDNKGLGFVADSFFKQLHRLMVLDLSRTGIKNLPDSVSDLVSLTALLLNYCENLRHVPSLKKLKALKRLDLSHTTLEKMPQGMECLTNLGYLRMNG CGEKEFPSGILPKLSHLQVFVLDEYYRPITVKVKEVVSLRNLETLECHFEGLSDFVEYLGSRDKTQSLSTYRILVGMVDEDFWQYSDYSPSKTVGLGNLS INRDRDFQVKFLNDIQELVCESIDARSLCDVLSLENAPELVVIQIYDCDSMESLVSSSWFCSAPPPLPSYYGMFSGLKEFYCSGCKSMKKLFPLVLLPNL VNLERIEVMLCKKMEEIIGTTDEESTTSNSITGFILPKLRTLRLRYLPELKSICSAKLICNSLEDITVTFSKKLKRMPICLPLLENDKPSPPLSLRIMYI EPKEWWETVVEWEHPNAKDVLRPFVKFGLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014346 [exp]	0	1
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014340 [exp]	2.44	0.8423
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014348 [exp]	3.16	0.8215
AT1G14920	GRAS	RGA2, GAI	RESTORATION ON GROWTH ON AMMON...		Potri.004G070500 [exp]	7.41	0.7578
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.001G136200 [exp]	8.48	0.7523
AT4G10780			LRR and NB-ARC domains-contain...		Potri.019G014372 [exp]	8.66	0.7965
AT4G27220			NB-ARC domain-containing disea...		Potri.018G136301 [exp]	10.77	0.8002
AT5G17680			disease resistance protein (TI...		Potri.017G010800 [exp]	12.24	0.7614
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014312 [exp]	15.49	0.7805
AT5G05140			Transcription elongation facto...		Potri.016G033300 [exp]	16.49	0.7129
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014326 [exp]	20.78	0.6996

Compare expression of checked genes

Potri.019G014346 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.