Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 217 / 1e-57 NB-ARC domain-containing disease resistance protein (.1) AT4G10780 182 / 8e-47 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G27190 179 / 2e-45 NB-ARC domain-containing disease resistance protein (.1) AT1G12290 173 / 7e-44 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G63020 171 / 5e-43 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12220 166 / 1e-41 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G43730 161 / 3e-40 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12280 160 / 1e-39 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 155 / 4e-38 RFL1 RPS5-like 1 (.1) AT1G63360 153 / 1e-37 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014336 [exp] 1652 / 0 AT4G27220 320 / 2e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014328 [exp] 1505 / 0 AT4G27220 283 / 2e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014324 [exp] 1275 / 0 AT4G27220 271 / 1e-75 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014340 [exp] 1196 / 0 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 1183 / 0 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014312 [exp] 1175 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 1167 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014370 [exp] 1165 / 0 AT4G27220 335 / 2e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014304 [exp] 1141 / 0 AT4G27220 283 / 2e-80 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 70 / 1e-11 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 65 / 4e-10 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 65 / 6e-10 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028639 [exp] 64 / 7e-10 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 64 / 9e-10 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10014712 [exp] 64 / 1e-09 AT3G07040 492 / 3e-159 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 63 / 1e-09 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 62 / 3e-09 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 62 / 5e-09 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 61 / 6e-09 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G014356.1 pacid=42774471 polypeptide=Potri.019G014356.1.p locus=Potri.019G014356 ID=Potri.019G014356.1.v4.1 annot-version=v4.1 ATGGAAGGAGTCCCACAATCTGCGGAGGATGATGTCAACTTGACATCGAATCAGTTTGATCTTCAATCACCAGAAGATACATTCATGCTTGACCCTGAGC TTCTCTTGGACCAACAATGGACTGATTATCAGTTACCAATGAGCAATCAAGTGCCTGCGATGCTACCTACTAGGCCGGCAGACAACCAAGGCTCCATATT ATGCAATGATCAAGGTGGACAGAACAATGTGATCAACGATAGTATTCAACAAACAACTGATCAGTCTCCACCTTCATTTCCTCAAACCATGATGGAAGGG TTCCTACCATCTTCTATGGAGGATAATGTCAACTTTACATCGAATGAGCTCGATTTTCAATCACTATTGCCCGACCTTGAGCTTCTCTCGCCGCCACCGG AGGTTCCAGTCAACCAAAGCTCCATATCATGCAATGATCAAGGTGGACAGAACAATGTGATCAACGATAGTATTCAACAAACAACTCAGTTTCCAACTTC ATTCCCTGAAACAATGACAACAATGGGAAATGTGATCAACGATAGTATTCAACAAACAACTCCTTTTCCAACTTCATTTCCTGAAACCATGACAACAATG GGAGGTTTAGATGGAACATCATCATTATGGATCAACCAAAATGAACCAAATTGGCCTAAAACTCAATCAAGGCATCAGAACTCCTTTATTCATCAACCTC AGCCGGGACATGGCTATATGACAGCGAACACAACTACCTCACAACATGCTGGCTTCAATCAACCTGGACAATCTTTTCCTGCTCCCCGGTCACAGATGGA TAACCTCCAAGTCCGAGGATTGCAAAATCAAACTGCTATGCCAAATGCCTCTAATCCTGGCCTTGGCACTTCCCTGCGAAGTCAAAATAGGGGTTTAAAT ACTCAACAAGTTGAAATGGTTAGATCAAAGGATCCATTTTGGAATTATATTGAAGATAGGACTGATGGAAGCATGAAGTGTAAGTTTTGTCCACGTGCAT TTGCCAATAAAACTTCCATTTCAAGGATCAAATGGCATTTATCAGGAGAAGAAGGGCATGGTGTTGCCATTTGTCGTGGGGTGCCTAAAGAAGTTCAAGA AGCAGCCTTTCTAGCTATGTGTGGTGGCAACAAAAGACAGAAAATCACAGCAAGTTCAGTCAATGTTAATGATTGTGGAATTTCAACAATGGAAGGAGGA ATTGGAAGGGTACAAAGAGAAGTTCAGGTTGTAGAACCCGGAGTAGTGGAAGAGAGGATTTCTTCACATGCAATAGCAGGAAACGACGTAGTAAGCATGA CCGGAATGAGAGCACCAGAACATGGAGTTTCCGAAGGGGCACTCGAGAGCAGACCGAGGACAGATCCCGTGGATCGATCGTTGGAACAAAGCAATGCAGT ACTTGGCAATTTGGAAGGGGGTGCTGGAAGGATACAAGTGGGAGTTCAGGGGGTGCTGGAACAAGGTGCCGGGGAAGAGAGAATTAATCGGGTTATAGTG AGGACAGAACCAGTGGAGGAGGATGTGGAGAATAGTCGAAGATCAGTAGTGCAGGCTGGCGCAGGAGCTAGATCTTCTGAAAGTCTGAAATACAACAAGA CTAGAGGAGTTCCATTACCTACTAGCTCTAAAAAGCCAGTGGGTCAAGTATTCGAAGAGAATACGAAGGTGATATGGTCTTTGTTAATGGATGATAAAGT CTCAATCATTAGCATTTATGGGATGGGTGGGATTGGTAAAACAACAATACTGCAACATATCCATAATGAGCTTCTACAAAGACCAGATATTTGTGATTAT GTTTGGTGGGTGACTGTGTCTCAAGATTTCAGCATTAAAAAATTGCAGAATCGTATTGCTAAACGTCTTCATCTAGACCTTTCAAGCGAAGATGATGAAC TACATAGAGCTGGCAGATTGTCAAAAAAACTAAAGAAGAAACAAAAATGGATTCTTATTTTAGATGATTTGTGGAACTATTTTGACCTACACAAAGTGGG AATTCCTGAAAAGTTGGAAGGATGCAAGCTGATTATGACAACTCGATCAGAAACAGTTTGTGAAGGGATGGCTTGCCAGCACAAAATCAAAGTGAAGCCA CTTTCTAATAGAGAAGCTTGGGCTTTGTTTATGGAGAAACTTGAACGTGATGTAGCACTTTCACCAGAAGTGGAAGGAATTGCGAAAGCTGTTGCAAAGG AATGTGCTGGTTTACCATTGGGAATTATTACAGTGGCAGGAAGCTTGAGGGGAGTGGATGACTTACATGAGTGGAGAAATACATTGAACAAATTGAGAGA ATCAGAATTTAGGGAAAAGAAGGTATTCAAGTTATTGAGGTTTAGTTATGATCAATTAGGTGATTTAGCACTACAACAATGTCTCTTGTACTGTGCATTA TTTCCTGAAGATGATAGGATTGAAAGGGAGGGGTTGATAGGTTATTTGATTGACGAGAGAATAATTAAAGGAATGAGGAGCAGGGGAGCTGCATTTGACG AGGGCCACTCGATGCTTAATATACTTGAAAATGTCTGTCTATTGGAAAGTGCTCAAATGGATTATGATGATAGAAGATATGTCAAGATGCATGACTTGAT TAGGGACATGGCCATCCAACTACTGCTAGAGAACTCTCAAGGGATGGTTAAAGCAGGTGCACAATTAAAAGAGTTGCCAGATGCAGAGGAGTGGACAGAG AATCTGATGAGAGTTTCACTAATGCAAAACGAGATCGAAGAAATTCCTTCCAGCCATTCACCAACGTGTCCCTATCTATCAACTCTATTGCTATGTAAAA ATAATCTGTTGGGATTTATTGCGGATTCATTTTTCAAGCAATTGCATGGGCTCAAGGTCCTCGATCTGTCTTGGACAGGTATTGAAAATTTGCCAGACTC TGTCTCTGATTTGGTGAGTCTCTCTGCGTTATTGCTCAATGATTGTGAGAAGTTAAGACATGTTTCATCATTAAAGAAGCTCAGGGCACTGAAGAGGTTG AATCTCTCTCGTACTGCACTTGAAAAGATGCCGCAAGGAATGGAATGCCTAACCAACCTGAGGTATCTTAGAATGAATGGATGTGGTGAAAAGGAGTTTC CCAGTGGGATATTACCAAAACTCTCTCACCTGCAAGTCTTTGTACTAGAAGAGTTAATGGGGGAATGTTATGCTCCGATAACAGTTAAAGGAAAGGAAGT ACGATCCTTGAGATATTTGGAAACTTTGGAATGCCATTTCGAAGGTTTTTCTGACTTCGTGGAGTATCTCAGATCTCGGGATGGGATCCTATCATTAAGC ACATACAAAGTTTTAGTAGGAGAGGTGGGTAGGTATTTAGAGCAATGGATTGAAGATTATCCAAGTAAAACAGTTGGGTTGGGTAATTTGAGTATCAACG GAAATAGAGATTTTCAGGTCAAGTTCTTAAATGGCATTCAAGGACTGATTTGTCAATGCATCGATGCAAGAAGTTTATGTGATGTTTTGTCATTGGAGAA TGCAACTGAACTGGAGCGCATCAGCATTCGGGATTGCAATAACATGGAGAGCTTGGTTTCATCTTCTTGGTTCTGCTCTGCTCCACCACGTAACGGTACG TTTTCTGGTCTTAAAGAGTTTTTTTGTTATAATTGTGGAAGTATGAAGAAGCTGTTCCCGCTTGTGTTGCTGCCAAACCTCGTAAACCTGGAAAGGATTG AAGTGAGTTTCTGTGAGAAAATGGAGGAGATAATAGGAACAACAGATGAAGAAAGCAGCACCTCCAATTCCATCACGGAAGTCATTCTCCCAAAGTTAAG AAGTCTGGCATTGTATGTGTTACCAGAACTGAAAAGCATTTGTAGTGCAAAACTGATTTGCAATTCTCTTGAAGATATTAAGTTAATGTATTGTGAGAAG CTGAAGAGGATGCCAATTTGTCTTCCGTTGCTTGAAAATGGCCAGCCATCTCCTCCCCCTTCTCTTAGAACAGTCTATTCATGGCCAAAAGAATGGTGGG AGACAGTAGTGGAGTGCGAGCATCCTAATGCAAAGGATGTCCTTCGTCCCTTTGTAAAGTAA
AA sequence Show only first row Show all	>Potri.019G014356.1 pacid=42774471 polypeptide=Potri.019G014356.1.p locus=Potri.019G014356 ID=Potri.019G014356.1.v4.1 annot-version=v4.1 MEGVPQSAEDDVNLTSNQFDLQSPEDTFMLDPELLLDQQWTDYQLPMSNQVPAMLPTRPADNQGSILCNDQGGQNNVINDSIQQTTDQSPPSFPQTMMEG FLPSSMEDNVNFTSNELDFQSLLPDLELLSPPPEVPVNQSSISCNDQGGQNNVINDSIQQTTQFPTSFPETMTTMGNVINDSIQQTTPFPTSFPETMTTM GGLDGTSSLWINQNEPNWPKTQSRHQNSFIHQPQPGHGYMTANTTTSQHAGFNQPGQSFPAPRSQMDNLQVRGLQNQTAMPNASNPGLGTSLRSQNRGLN TQQVEMVRSKDPFWNYIEDRTDGSMKCKFCPRAFANKTSISRIKWHLSGEEGHGVAICRGVPKEVQEAAFLAMCGGNKRQKITASSVNVNDCGISTMEGG IGRVQREVQVVEPGVVEERISSHAIAGNDVVSMTGMRAPEHGVSEGALESRPRTDPVDRSLEQSNAVLGNLEGGAGRIQVGVQGVLEQGAGEERINRVIV RTEPVEEDVENSRRSVVQAGAGARSSESLKYNKTRGVPLPTSSKKPVGQVFEENTKVIWSLLMDDKVSIISIYGMGGIGKTTILQHIHNELLQRPDICDY VWWVTVSQDFSIKKLQNRIAKRLHLDLSSEDDELHRAGRLSKKLKKKQKWILILDDLWNYFDLHKVGIPEKLEGCKLIMTTRSETVCEGMACQHKIKVKP LSNREAWALFMEKLERDVALSPEVEGIAKAVAKECAGLPLGIITVAGSLRGVDDLHEWRNTLNKLRESEFREKKVFKLLRFSYDQLGDLALQQCLLYCAL FPEDDRIEREGLIGYLIDERIIKGMRSRGAAFDEGHSMLNILENVCLLESAQMDYDDRRYVKMHDLIRDMAIQLLLENSQGMVKAGAQLKELPDAEEWTE NLMRVSLMQNEIEEIPSSHSPTCPYLSTLLLCKNNLLGFIADSFFKQLHGLKVLDLSWTGIENLPDSVSDLVSLSALLLNDCEKLRHVSSLKKLRALKRL NLSRTALEKMPQGMECLTNLRYLRMNGCGEKEFPSGILPKLSHLQVFVLEELMGECYAPITVKGKEVRSLRYLETLECHFEGFSDFVEYLRSRDGILSLS TYKVLVGEVGRYLEQWIEDYPSKTVGLGNLSINGNRDFQVKFLNGIQGLICQCIDARSLCDVLSLENATELERISIRDCNNMESLVSSSWFCSAPPRNGT FSGLKEFFCYNCGSMKKLFPLVLLPNLVNLERIEVSFCEKMEEIIGTTDEESSTSNSITEVILPKLRSLALYVLPELKSICSAKLICNSLEDIKLMYCEK LKRMPICLPLLENGQPSPPPSLRTVYSWPKEWWETVVECEHPNAKDVLRPFVK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014356 [exp]	0	1
AT4G10780			LRR and NB-ARC domains-contain...		Potri.019G014332 [exp]	1.00	0.9241
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014324 [exp]	1.41	0.9195
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014336 [exp]	2.00	0.9133
AT1G61190			LRR and NB-ARC domains-contain...		Potri.019G014358 [exp]	2.44	0.8949
AT5G17680			disease resistance protein (TI...		Potri.017G103701 [exp]	2.44	0.9137
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014364 [exp]	3.16	0.9080
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014334 [exp]	5.74	0.8778
AT5G16220			Octicosapeptide/Phox/Bem1p fam...		Potri.004G095600 [exp]	8.00	0.8569
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014328 [exp]	9.16	0.8881
AT5G36930			Disease resistance protein (TI...		Potri.006G270000 [exp]	9.53	0.8718

Compare expression of checked genes

Potri.019G014356 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.