Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27220 334 / 6e-99 NB-ARC domain-containing disease resistance protein (.1) AT4G26090 265 / 2e-74 RPS2 RESISTANT TO P. SYRINGAE 2, NB-ARC domain-containing disease resistance protein (.1) AT1G12220 264 / 4e-74 RPS5 RESISTANT TO P. SYRINGAE 5, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT4G27190 264 / 9e-74 NB-ARC domain-containing disease resistance protein (.1) AT1G12210 258 / 2e-72 RFL1 RPS5-like 1 (.1) AT1G12280 257 / 7e-72 LRR and NB-ARC domains-containing disease resistance protein (.1) AT4G10780 254 / 7e-71 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G47250 251 / 3e-70 LRR and NB-ARC domains-containing disease resistance protein (.1) AT5G63020 249 / 4e-69 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G12290 239 / 6e-66 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G014312 [exp] 1570 / 0 AT4G27220 300 / 3e-86 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014340 [exp] 1552 / 0 AT4G27220 341 / 1e-99 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014372 [exp] 1509 / 0 AT4G10780 265 / 1e-73 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.019G014322 [exp] 1490 / 0 AT4G27220 319 / 3e-92 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014328 [exp] 1467 / 0 AT4G27220 283 / 2e-79 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014326 [exp] 1378 / 0 AT4G27220 321 / 3e-95 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014304 [exp] 1320 / 0 AT4G27220 283 / 2e-80 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014338 [exp] 1316 / 0 AT4G27220 342 / 2e-101 NB-ARC domain-containing disease resistance protein (.1) Potri.019G014308 [exp] 1305 / 0 AT4G27220 326 / 1e-95 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 154 / 1e-37 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10018937 [exp] 142 / 5e-34 AT3G07040 587 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10002945 [exp] 141 / 7e-34 AT3G07040 580 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10028639 [exp] 139 / 3e-33 AT3G07040 579 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 136 / 4e-32 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 133 / 4e-31 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 132 / 6e-31 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10020016 [exp] 130 / 1e-30 AT3G07040 563 / 0.0 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10016316 [exp] 128 / 1e-29 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10041243 [exp] 124 / 1e-28 AT3G07040 526 / 1e-172 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.019G014370.1 pacid=42773379 polypeptide=Potri.019G014370.1.p locus=Potri.019G014370 ID=Potri.019G014370.1.v4.1 annot-version=v4.1 ATGTGTGGTGGCCACAAAAGACAAAAAATCACAGCAAGTGCAGTCAATGTTAATGACTGTGGAATTTCAACTTGTCTACAAGAACAAAACATTGAGAATG AAAATACGGGAGGCGGTATTGGAAGGGTACAAAGAGAAGTTCAGGTTGTAGAACCCGGAGTAGTGGAAGAGAGGATTTCTTCACATGCAATAGCAGGAAA CGACGTAGTAAGCATGACCGGAATGGGAGCACAAGAAGATAGAGTTTCCGAAGGGGCAGTCGAGAGCAGACTGAGGACAGAACCAGTGGATCGAGCGTTG GAACAAAGCAATGCAGTACTTGGCAATATGGCAGGGGGTGCTGGAAGGATACATGTGGGAGTTCAGGGCATGGAACAAGGTCCAGGAGAAAATAGAATTC AGTTGCATCTACAAGCGGAAAATGGCATGGAAAACACTGGTGAAGGATCTTTTCAGCATGATGCATTTGAGAATGTACTTAGAACAGAGCAAGTGCAGCT TCTGGAGCCTCAAGGAGATTCATCCCAATTTTGTCTTGACATTGGAAGATGTGATGATCAACCTTGTGCTCCATCAGTAAACGATGATGTAAATAGGCAT GATGCACTGGACATGGTTAGAGTGAGGACAGAACCAGTGGAGGATGATGATGTGGAGAATAGTGGAAGATCAGGAGTGCAGGCTGGCGCAGGAGCTAGAT CTTCTGAAAGTCTGAAATACAACAAGACTAGAGGAGTTCCATTACATACTAGCTCTACAAAGCCAGTGGGTCAAGCATTTGAAGAGAATAAGGAGGTGAT ATGGTCTTTGTTAATGGATGGTAAAGTCCCAATCATTGGCATTTATGGGATGGGGGGAGTTGGTAAAACAACAATAATACTACATATCTATAATGAGCTT CTACGAAGACCAGACATTTATGATCACGTTTGGTGGGTGTCTGTGTCCCAAGATTTCACCATTAATAGATTGCAGAATCTTATTGCTAAACGTCTTGATC TAAAACTTTCAAGCGAAGATGATGATCGGCACAGAGCTGCCAAATTGTCAGAAGAACTAAGAAAGAAACAAAAATGGATTCTCATTTTAGATGATTTGTG GAACAATTTTGAGCCTGACAACGTGGGAATTCCTGTCTCATTGAAAGGATGCAAGCTGATTATGACAACTCGATCAAAAATAATTTGTAATCAGATGGCT TTCCAACACAAAATCAAAGTGAAGCCACTTTCTGAGGGTGAAGCTTGGAATTTGTTCATGGAGAAACTTGGACGTGACATAGCACTTTCACTAGAAGTGG AAGGAATTGCGAGAGACATTGCAAGGGAATGTGCTGGTTTGCCATTAGGAATTATTACAGTGGCAGGAAGCTTGATGGGAGTGGATGATCTACATGAGTG GAGAAATACATTGAAGAAATTGAGAGAATCAGAATTTAGGGACATGGATGAGAAGGTATTCCAGGTATTGAGGGTTAGTTATGATCGGCTAGGTGATTTA GCACTACAACAATGTCTCTTATACTGTTCATTATTTCCTGAAGATCATGTGATTGAAAGGGTGGAGTTGATAGATTATTTGATTGACGAGGGAATAATTA AAGGAAAGAGGAGAAGGGAAGATGCATTTGATGAGGGCCACACGATGCTTAATAGACTTGAAAATGTTTGCCTATTGGAAAGTGTTAAAATGGAGTATGA TGGTAGTAGAGGTGTCAAGATGCATGACTTGATGAGGGACATGGCCATCCATATACTGCAAGAGAACCTTCAATACATGGTTAAAGCAGGTGCACAATTA AAAGAGTTGCCAGATGCAGAGGAGTGGACGGAGAATCTGACGATAATTTCACTAATGCAAAACGAGATCGTAGAAATTCCTTCCAGCCATTCACCAATGT GTCCAAATCTATCCACTCTACTTCTATGTCAAAATCTTTGTTTGCGAATCATTGCAGATTCATTTTTCAAGCAATTGCATGGGCTCAAGGTTCTTGATCT GTCTTCTACAGCTATTAAACGTTTGCCAGACTCTGTCTCTGATTTGGTGAGTCTCACTGCATTATTGCTCATTGAGTGTTACAACTTAAGACATGTTCCA TCATTAAAGAATCTCAGGGCACTGAAGAGGTTGGATCTCTCTCATACTTCACTTAAAAAGATGCCGCAAGGAATGGACTGTCTATCCAACCTGAGGTATC TTAGAATGAATGGATGTGGTGAAAAGAAGTTTCCTAATAGGATATTACCAAAACTCTCTCACCTGCAAGTCTTTGTACTAGAAGAGGTTTTTGAGGGAAG TTATGCTCCGATAACAGTTGAAGGAAAGGAAGTAGGATCCTTGAGAAATTTGGAAACTTTGCAATGCCATTTCGAAGGTCTCCCTGACTTCGTGGAGTAT CTCAGATTTCGGGATGTGACCCAATCAGTAAGCACATGCAAAATTTTAGTAGGTATACTGGATGAATTACTTTATTACGGAATAACTGAGTGTCCTTTTC CAAGTAAAACAGTTGGGTTGGGTTATATGAGTATCAACAAAGATAGAGATTTTCAGGTCAAGTTCTTAAATGACATTCAAGGACTGGTTTGTCATAGCAT CGATGCAAGAAATTTATGTGATGTTTTGTCATTAGAGAATGCACCTGAACTGGAGGTTATCCAAATTTGGGATTGCAATAGCATGGAGATCTTGGTTTCA TCTTCTTGGTTCTGCTCTGCTCCACCATCATTGCCATCATATAATGGTATGTTTTCTGGTCTTAAAGAGTTTTATTGTCATGGATGTAAAAGTATGAAGA AGTTGTTCCCACTTGTGTTGCTGCCAAACCTCGTAAACCTGGAAAGGATTGAAGTGATGGATTGTGAGAAAATGGAGGAGATAATAGGAACAGCAGATGA AGAAAGCAGCACCTCCAATTCCATCACGGAATTCATTCTCCCAAAGTTAAGAACTTTGAAATTGTCTGAATTACCAGAACTGAAAAGCATTTGCAATGCA AAACTGATTTGCAATTCTCTTGAAGATATTACTATAATGTTTTGTGTTGAGCTGAAGAGGATGGCAATTTCTCTTCCATTGCTTGAAAATGGTCAGCCAT CTCCTCCCCCTTCTCTTGAAGAAATCATAGTATATCCAGAAGAATGGTGGGAGACAGTAGTGGAGTGGGAGCATCCTAATGCAAAGGATGTCCTTCGTCC CTTTGTAGAGCTTGGTTTAGCATCATCCCCGTAG
AA sequence Show only first row Show all	>Potri.019G014370.1 pacid=42773379 polypeptide=Potri.019G014370.1.p locus=Potri.019G014370 ID=Potri.019G014370.1.v4.1 annot-version=v4.1 MCGGHKRQKITASAVNVNDCGISTCLQEQNIENENTGGGIGRVQREVQVVEPGVVEERISSHAIAGNDVVSMTGMGAQEDRVSEGAVESRLRTEPVDRAL EQSNAVLGNMAGGAGRIHVGVQGMEQGPGENRIQLHLQAENGMENTGEGSFQHDAFENVLRTEQVQLLEPQGDSSQFCLDIGRCDDQPCAPSVNDDVNRH DALDMVRVRTEPVEDDDVENSGRSGVQAGAGARSSESLKYNKTRGVPLHTSSTKPVGQAFEENKEVIWSLLMDGKVPIIGIYGMGGVGKTTIILHIYNEL LRRPDIYDHVWWVSVSQDFTINRLQNLIAKRLDLKLSSEDDDRHRAAKLSEELRKKQKWILILDDLWNNFEPDNVGIPVSLKGCKLIMTTRSKIICNQMA FQHKIKVKPLSEGEAWNLFMEKLGRDIALSLEVEGIARDIARECAGLPLGIITVAGSLMGVDDLHEWRNTLKKLRESEFRDMDEKVFQVLRVSYDRLGDL ALQQCLLYCSLFPEDHVIERVELIDYLIDEGIIKGKRRREDAFDEGHTMLNRLENVCLLESVKMEYDGSRGVKMHDLMRDMAIHILQENLQYMVKAGAQL KELPDAEEWTENLTIISLMQNEIVEIPSSHSPMCPNLSTLLLCQNLCLRIIADSFFKQLHGLKVLDLSSTAIKRLPDSVSDLVSLTALLLIECYNLRHVP SLKNLRALKRLDLSHTSLKKMPQGMDCLSNLRYLRMNGCGEKKFPNRILPKLSHLQVFVLEEVFEGSYAPITVEGKEVGSLRNLETLQCHFEGLPDFVEY LRFRDVTQSVSTCKILVGILDELLYYGITECPFPSKTVGLGYMSINKDRDFQVKFLNDIQGLVCHSIDARNLCDVLSLENAPELEVIQIWDCNSMEILVS SSWFCSAPPSLPSYNGMFSGLKEFYCHGCKSMKKLFPLVLLPNLVNLERIEVMDCEKMEEIIGTADEESSTSNSITEFILPKLRTLKLSELPELKSICNA KLICNSLEDITIMFCVELKRMAISLPLLENGQPSPPPSLEEIIVYPEEWWETVVEWEHPNAKDVLRPFVELGLASSP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014370 [exp]	0	1
AT4G15020			hAT transposon superfamily (.1...		Potri.018G145554 [exp]	1.41	0.8379
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014318 [exp]	3.16	0.8378
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014304 [exp]	4.00	0.8041
AT5G06740			Concanavalin A-like lectin pro...		Potri.001G455500 [exp]	7.41	0.7721
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145562 [exp]	7.74	0.7938
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.007G097900 [exp]	8.48	0.7855
					Potri.019G014316 [exp]	13.49	0.7695
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.008G213500 [exp]	13.85	0.7439
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113066 [exp]	16.49	0.7302
AT4G01550	NAC	ANAC069, NTM2	NAC with Transmembrane Motif 2...		Potri.002G181800 [exp]	18.76	0.7604

Compare expression of checked genes

Potri.019G014370 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.