Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 513 / 5e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 406 / 7e-122 transmembrane receptors;ATP binding (.1.2) AT5G17680 383 / 4e-114 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 356 / 4e-107 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 359 / 3e-104 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 336 / 2e-98 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G46450 327 / 4e-95 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 325 / 6e-95 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT4G11170 326 / 1e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 322 / 5e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099700 [exp] 978 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.001G028750 [exp] 965 / 0 AT5G36930 516 / 3e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009400 [exp] 634 / 0 AT5G36930 504 / 4e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008164 [exp] 632 / 0 AT5G36930 491 / 3e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009251 [exp] 622 / 0 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 606 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012000 [exp] 598 / 0 AT5G36930 489 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008612 [exp] 598 / 0 AT5G36930 467 / 6e-145 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G015400 [exp] 595 / 0 AT5G36930 438 / 1e-134 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 760 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 700 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 504 / 4e-163 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 485 / 5e-152 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 486 / 3e-151 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 436 / 7e-134 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 407 / 2e-122 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 400 / 2e-120 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 389 / 1e-117 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 375 / 1e-111 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G018800.2 pacid=42773360 polypeptide=Potri.019G018800.2.p locus=Potri.019G018800 ID=Potri.019G018800.2.v4.1 annot-version=v4.1 ATGGCTGCTGTTAATAACAAGAAATCAAGCTCCTCAATGTGTGAATTTTCTTATCATGTGTTTTTAAGCTTTAGGGGCGCGGACACCCGCAAGAATTTCA CCGACCATCTGTATACAGCTTTGGAGCGGGCAGGAATTCATGTATTTAGAGATGACGATGCAATTGAGAGAGGTGCAGACATAGAATGTGATGTTGAAAA GGCAATACGACAGTCAAAAATGTCATTGATTGTCTTCTCGAGTAATTTTGCTTCTTCAAGCTGGTGCCTAGATGAGGTTGCAATGATTATGGAACATAAA AAGCATCATGCTGGGCACATTGTTCTTCCTGTATTTTACGACGTCGATCCATCAGAAGTCCAAAAGCAAACAGGTGATTTGGCAGAAGCATTTTCTGGAC ATGGAAAACGCTTCAAGGATGAGAAGATTAAGAGATGGAGGAAAGCTCTTTGCAAGGTCATTAATCTGGCAGGAATGGTTTTACACAACAGACCTGAGGC AAAATTCATACAAGATATTGTCAAAAAGGTTGGAGAAATGTTGAAACGCACAATACTGCATGTGCCCTCTTATTTAGTTGGAGTTGATGCTCAGGTGAAA GGCATTAACAGCTGGATACAAGACAGGCCTGAAGATGTTAATATAGCAGTAATATGTGGAATTGGTGGTGTTGGTAAGACAACAATTGCCAAGACTGTTT TCAACCTCAATTTCGAACAATTTGATTGTTGGAGCTTTCTGAAGGATGTCAGAGAAACATCAAAGCAATACAATGGTTTAGTTCAATTACAGATGCAACT TCTTTCTGATTTGTCAAAGGGGGGATTCCACAAGATAAACAATGTAGATGACGGAACTATCCAAATAAGATATGCCACACGGTTCAAGAAAGTACTTATT GTTCTCGATGATGTAGATGATGTTGGCCAACTCAAATCAATTCTTGAAATGGGGAAATGGCTTTACAAGGGAAGTAGAATCATCATAACAACCAGAAATG GTCGCTTGCAAAGTTTTCATGATCAACCTTGTAAAGAGTTTAGAATTATGCCTCTTCATGAAAGTGAATCCCTTCAACTCTTTACTTGGCATGCATTTAG ACAATCACAGCCTTCTGAATATTACTTGCAAGACTCTAAGAATATAGTGCGTTATTGTGGAGGGCTACCACTTGCTCTCGAAGTAATTGGCTTTTCTTTG TCTGTTCGAACTGGGGATTCATGGAAAAGAGCAATAAGAGAACCAGAAGCCCTTGATGGTGGTAAAATTCACGAGATTCTTCGAGTAAGTTATGACTCTC TTCAAGATGATCGTGACAAGAATTTGTTTCTTGATATAGCTTGTTTCTTCATTGGAGAAGACATAACCTTTGTGGAGAGAATTGTAGAAAGCTGTGATTT CTATCGGAATGTTGGAATTCAAGAACTTATCGACAGATATCTGATATCCATTGATAAGGACAATAAACTGGCAATGCATCAATTGCTTAGGGAAATGGGA TGGGAAATTGTCCGTCGAGAATCACCTGAGAATCATGGAGAGCGTAGCAGAATTTGGCGTCATGGTGATTCATTTAAGATTTTGAGAAAAAAAAATGGCT CCAGGTCTATTAAGAGCTTCATCCTTGACTGGGAACAAGTAAACATAGCCTCAAAATGTTTGGTGGACTTAAACACTGATGCTTTTGAAAGCATGAGCAA TCTAAAACTAATCCACCTCAATAATTTGAGGCTTAAAGGAGGTTATGAAAATTTTCCAAAAGGATTAGTGTGGCTGTGTTGGCATCACGTCCCCTGGGAT CATATACCAGTTGATTTTTATCTCGAGGATCTTATTGTTCTTGACCTATGCAACAGCAGTCTAAGACATGTTTGGCATGGAATCCGGTGTTTTCCAGGGT TGAAGATCCTTAATCTCAGTCGTTGTCATGGTCTAGTTAGAACTCCAGACTTCTCAGAACTCCTTTGTCTTGAAATATTGATGCTTGAAGAATGCACGAA TTTGGCTGAGGTTCACAAGTCCATTGGAAACCTACAAAATCTTTCCTTTTCAAGTTTTAAGGGCTGCATAAATCTCAAGAGACTTCCAGATGAAATGTGC AAGTTGACATCACTTCAAACTCTAATATTGTCTGGTTGCTCTAAACTTGATAGTGAGATACCGAATCACTTGGAAAAAATGAAATTCTTGGGGGTGATTC GTGCAGATGGACCTCTCATGAGTCAATTTCAAAAGTGGGCTTCAAGAATGTGGTCCTGGTTAATGAGAAACCGCACATTATCAACCAAGCGTTCATTCGA TTGCTTACCATCTTCTTTGGTAAATTTAAGTCTTGCAAACTGCAATATAAGGGATGATATGATGCCTAATAATCTTAGTTCCTTGCCTTGTTTGGAACAT TTGGATCTAAGTGGAAATCCATTTGAGCATCTACCTGAAAGCATTGGTGGCCTGAAAAGGCTTGATACTCTTATGTTACAAGGATGCACCAGTCTCCAAT CACTTCCAAGCCTACCAAGTAGTTTAGAGAGATTACTTATAAGCAATTTTGGACCCCTACTGGGACCACTGGATATCTACATGTTTGGTCGCCAAGAACC AGACAAGCTTCAATGCCTGTTCAAGTTAGAACACTTGCTGAACTTTGACTTGGAGATGATTTATAATGTTGGTTTGCAGATATCAGAATCCATGAGAATC ACTCAAGACAACACTAATTTTGATGCAATGACAACACAAGGAAAGACTACCATCCAGGTATTTCAAGATGGTGGCATAAGTAACATATATCTGCCAGTGC ATGAGATTCCAGATTGGTTCTGTCACGCGACAGGGACATGCCATGCATGTTATTGCGTACCTTCAAGTTCTAGTTTTGATATCTTTGGTTTCAACATATG TGTTGTGTATACATGCTCTGACCTGAAGGGTAATTTTGAAAGTTCTAGCAGTCCCAAAATAAGAATCGAAGCCAAAGGTCAAATTTTGGAGTATAGCCCA GAAATCTTTGGAGTTCCTGAAGCCAATGAGAATATGTTGTGGTTAAGCCATTGGACGCTTAGTTACAAGTTAGAAGCTGGTGATTCAGTGGCATGTTCCA TAATTTTGCCTGCTTGTTTTCAAGTGAAGAAGTTTGGTATCCACCTAGTTTCTCCGCATCAGAATTCAGCAGACAAGGAAGGTTATAGCATACAATACCT CCCTTTGGCATAA
AA sequence Show only first row Show all	>Potri.019G018800.2 pacid=42773360 polypeptide=Potri.019G018800.2.p locus=Potri.019G018800 ID=Potri.019G018800.2.v4.1 annot-version=v4.1 MAAVNNKKSSSSMCEFSYHVFLSFRGADTRKNFTDHLYTALERAGIHVFRDDDAIERGADIECDVEKAIRQSKMSLIVFSSNFASSSWCLDEVAMIMEHK KHHAGHIVLPVFYDVDPSEVQKQTGDLAEAFSGHGKRFKDEKIKRWRKALCKVINLAGMVLHNRPEAKFIQDIVKKVGEMLKRTILHVPSYLVGVDAQVK GINSWIQDRPEDVNIAVICGIGGVGKTTIAKTVFNLNFEQFDCWSFLKDVRETSKQYNGLVQLQMQLLSDLSKGGFHKINNVDDGTIQIRYATRFKKVLI VLDDVDDVGQLKSILEMGKWLYKGSRIIITTRNGRLQSFHDQPCKEFRIMPLHESESLQLFTWHAFRQSQPSEYYLQDSKNIVRYCGGLPLALEVIGFSL SVRTGDSWKRAIREPEALDGGKIHEILRVSYDSLQDDRDKNLFLDIACFFIGEDITFVERIVESCDFYRNVGIQELIDRYLISIDKDNKLAMHQLLREMG WEIVRRESPENHGERSRIWRHGDSFKILRKKNGSRSIKSFILDWEQVNIASKCLVDLNTDAFESMSNLKLIHLNNLRLKGGYENFPKGLVWLCWHHVPWD HIPVDFYLEDLIVLDLCNSSLRHVWHGIRCFPGLKILNLSRCHGLVRTPDFSELLCLEILMLEECTNLAEVHKSIGNLQNLSFSSFKGCINLKRLPDEMC KLTSLQTLILSGCSKLDSEIPNHLEKMKFLGVIRADGPLMSQFQKWASRMWSWLMRNRTLSTKRSFDCLPSSLVNLSLANCNIRDDMMPNNLSSLPCLEH LDLSGNPFEHLPESIGGLKRLDTLMLQGCTSLQSLPSLPSSLERLLISNFGPLLGPLDIYMFGRQEPDKLQCLFKLEHLLNFDLEMIYNVGLQISESMRI TQDNTNFDAMTTQGKTTIQVFQDGGISNIYLPVHEIPDWFCHATGTCHACYCVPSSSSFDIFGFNICVVYTCSDLKGNFESSSSPKIRIEAKGQILEYSP EIFGVPEANENMLWLSHWTLSYKLEAGDSVACSIILPACFQVKKFGIHLVSPHQNSADKEGYSIQYLPLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G018800 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.019G016425 [exp]	4.69	0.8714
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.006G271400 [exp]	15.87	0.8178
AT2G24610		ATCNGC14	cyclic nucleotide-gated channe...		Potri.006G271480 [exp]	16.85	0.7962
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.011G165700 [exp]	21.90	0.8314
AT4G03090			sequence-specific DNA binding;...		Potri.002G213400 [exp]	23.36	0.8110
AT3G05090		LRS1	LATERAL ROOT STIMULATOR 1, Tra...		Potri.005G046500 [exp]	31.08	0.7674
AT3G14470			NB-ARC domain-containing disea...		Potri.018G135700 [exp]	32.40	0.7965
AT1G08620		PKDM7D	Transcription factor jumonji (...		Potri.002G037300 [exp]	32.86	0.8205
AT5G36930			Disease resistance protein (TI...		Potri.006G269900 [exp]	34.20	0.7774
AT4G27190			NB-ARC domain-containing disea...		Potri.001G444000 [exp]	34.74	0.8298

Compare expression of checked genes

Potri.019G018800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.