Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 655 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27170 484 / 2e-149 transmembrane receptors;ATP binding (.1.2) AT5G17680 462 / 7e-142 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G18360 423 / 3e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G41750 426 / 1e-130 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 433 / 1e-129 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G11170 418 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G63880 411 / 1e-125 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G44510 414 / 4e-125 TAO1 target of AVRB operation1 (.1) AT4G12010 409 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T002066 [exp] 1654 / 0 AT5G36930 631 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G017082 [exp] 1648 / 0 AT5G36930 638 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.003G014200 [exp] 1643 / 0 AT5G36930 673 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001933 [exp] 1637 / 0 AT5G36930 617 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G052000 [exp] 1614 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G016425 [exp] 1613 / 0 AT5G36930 650 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T002300 [exp] 1592 / 0 AT5G36930 635 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T001500 [exp] 1589 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G021681 [exp] 1587 / 0 AT5G36930 641 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 603 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10039850 [exp] 573 / 0 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 558 / 2e-177 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011741 [exp] 528 / 1e-167 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 522 / 3e-165 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 507 / 8e-161 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 486 / 7e-151 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 469 / 2e-145 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10003749 [exp] 461 / 2e-141 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 441 / 2e-136 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G019053.1 pacid=42774158 polypeptide=Potri.019G019053.1.p locus=Potri.019G019053 ID=Potri.019G019053.1.v4.1 annot-version=v4.1 ATGCTGAAAGAAAAACGCAAGCAATCCAAAGATGAAGACAACGATTCATCCTCGCGAAAGAGAAGAAAAGCTGACCTCAGTAAGCCTGTCAGTTTTGTCT CCACAGCTACCAGGACAGAGCCAGAGTCTTCTCGATCTAGACCAGAAGGGGCCTATGATGTCTTCTTGAGTTTTAGAGGAGAAGACACTCGCAAGACATT TACAGATCATCTATATACTGCCTTAGTCCAAGCAGGAATCCGCGCTTTTCGAGATGATGATGACCTTCCAAGAGGAGAAGAAATCTCCGATCATCTCCTC AGGGCAATTCAAGAATCAAAGATATCCATAGTTGTCTTCTCAAAAGGATATGCTTCTTCTAGATGGTGTCTCAATGAACTTGTAGAGATTCTTGAGTGCA AAAAGAGGAAAACCGGTCAGATTGTTCTTCCTATATTCTATGACATTGATCCTTCAGATGTGAGAAAACAGACTGGCAGTTTTGCAAAGGCATTTGATAA GCATGAAAAGCGTTTTGAAGAGAAGTTGGTGAAGGAGTGGAGAAAAGCTCTTGAGGATGCCGCAAACCTATCTGGACGGAGTCTCAATAATATGGCAAAT GGGCATGAAGCAAAATTTATCAAGAAGATTATCAAGGATGTGTTGAATAAATTAGATCCCAAGTACTTATATGTTCCTGAGCACCTAGTAGGTATGGATA AACTTGCTCATGATATTTTTGACTTTCTAAGCACTGCAACAGATGATGTACGCATTGCGGGCATACATGGGATGCCAGGAATAGGAAAGACGACTATAGC AAAAGTTGTATTTAAACAACTCTGCGATAGATTCGAGGACAGCTGTTTTCTTTCGAATATCAATATTGAAACACCAAAAAAACTTACAGGTCTTGTTGGT TTTCAAACGCAACTTCTTCGTGAAATTTTAAAACAAGGTGTTCCAAACTTCGAATGTGTTGATAGAGGAAAGGTTTTGATCAAAGAACGACTTCGTGGCA AAAGAGTTCTTGTTGTTGCTGATGATGTGGCTCATCTGGACCAGCTAAAAGCTTTGATGGGAGAGCGAAGCTGGTTTGGTCTCGGAAGTAGAGTAATTAT TACAACAAGAGATTCAAATCTTCTTCGTGAAGCAGATCGAACATATCAGATCGAAGAATTGAAACCAGACGAGTCCCTTCAGCTTTTCAGCTGCCACGCC TTTAAGGACTCCAAGCCAGCAAAAGATTATATTAAGCTTTCGAAGGATGCAGTTGATTACTGTGGAGGACTTCCTTTAGCTCTTGAGGTTATGGGTGCTT GTCTGTCTGGGAAAAACAGAGATGGTTGGAAATGTGTAATTGAAAAATTGAGAAGAATTCCAAACCACGATATTCAAGGAAGGCTTAGAATAAGTTTTGA CGCACTGGACGGTGAAGAACTACAAAATGCATTCCTTGACATCGCTTGCTTCTTTATTGATAGAAAGAAAGAGTACGTCGCAAAAGTGCTAGGAGCCCGT TGCGGTTACAATCCAGAAGTTGATTTGCAAACTCTCCATGAAAGGTCTCTGATTAAAGTATTGGGAGAGACGGTAACCATGCATGATCTATTACGAGACA TGGGAAGGGAGGTCGTTCGTGATAAGTTTCCAAAAGAACCTGGAAAGAGGACCAGAATTTGGAATCAAGAGGATGCATGGAATGTACTTGAGCAGCAGAA GGGTACGGTTGTTGTAGAGGGTCTTGCACTGGATGTCAGAGCATCAGAAGCTAAAGCACTTTGCGCAGGATCATTTGCAGAAATGAAACGCTTAAATTTA CTCCAAATCAATGGAGTACATCTCACCGGATCCTTCAAACTGCTTTCTAAAGAGTTGATGTGGATTTGTTGGCATAGATGTCCTTTGAAAGATTTTCCAT CTGATTTTACCGCAGACTATCTAGCTGTTCTTGATATGCAGTACAGTAACCTCAAAGAACTATGGAAGGGAAAAAAGATCCTCAACAGGCTAAAAATCTT TAATCTTAGTCATTCTCGGAACCTTGTTAAAACACCAAACTTGCACAGTTCAAGTCTAGAGAAACTAATTCTGAAAGGTTGCTCAAGTTTAGTTGAGGTG CATCAATCAATTGGACATTCGACGAGCCTCGTTTTCTTGAATCTCAAGGGATGTTGGAGTCTGAAGACTCTCCCTGAAAGCATTAGGAATGTAAAGTCTC TTGAAACTATGAAAATTTATGGGTGTTCACAACTTGAGAAATTGCCAGAAGGCATGGGTGATATGAAATTCTTAACTGAGCTATTAGCTGATGGGATTAA AACTGAGCAATTTCTCTCTTCAATTGGGCAATTAAAGTATGTCAAAAGGTTATCATTACGTGGATGCAGTCCGACTCCACCAAGTTGTTCTTTGATTTCA GCAGGTGTTTCAATTTTGAAATGTTGGCTGCCAACATCATTCACTGAATGGAGATTAGTGAAACATCTTATGCTTTCTAATTGTGGTTTGTCTGATCGTG CAACTAACTGTGTTGATTTTAGTGGTTTGTTCTCTCTAGAAAAATTGGATCTAAGTGAAAACAAATTCTCTAGCCTGCCTTATGGGATCGGCTTCCTTCC CAAGCTATCGCACTTGGTTGTTCAGACATGTGAATATCTTGTATCAATCCCAGATCTTCCCTCAAGTTTATGCCTTTTGGATGCATCTTCTTGCAAATCA TTGGAAAGAGTAAGAATACCAATCGAGTCAAAAAAAGAACTATGTGTAAATATATTTCAAAGTCTTTCGTTAGAAGAGATTCAGGGCATCGAAGGTCTAA ATAATAGTTTCTGGAATGTTAGTATTGAAAGACGCAGTCATTCACCAAATAAATTACAGAAGAGCGTTCTAGAGGCAATGTGCAACCGTGGTCACGGGTA TCGTATTAACTTCAGTCTAGAACATGATGAACTACATGAGATGCCAGATTGGATGAGCTACAGGGGAGAAGGATGCTCATTGTCATTCCATATACCTCCA GTCTTCCATGGCTTAGTTCTTTGGTTAGAGAAGGGTACTCATATGTACACATACACTAACATTATTATTATTATAAGAAATAAAAGCAACGGAAGAATAT TGTTTAAAGATAAACGAGCACAGATAGGAATACATATATTTATGCAGGGATGGTTAAGATACATAAGTAGAAGTGAAATGGCAATGGAAGATTACTGTGG AGACGAATTGGAACTATACATTTCTTCAGAGCCAACAGACTATGCACTGCGCAAGGGTAAATCATTGAAACCAAGCGTTAAAGAATGTGGGGTCCATGTG ATCGCAGGGAAGTCAGATTCATTAAAAAAGTCGGCAGTGGAAAGAGATACAGTGATGCTTTCACCACCGCTGTATCATCTGCTTCCTCATCCTCATCGTG GTTCAATTACAACGTCTACACCTAAGCAATGGTGTGACTTTTTACTTGCGGAGCTGCAAAACCATAGCCTCGGTTTATTGCTTCTTGGTAGAGAAGACTT GGAGTGA
AA sequence Show only first row Show all	>Potri.019G019053.1 pacid=42774158 polypeptide=Potri.019G019053.1.p locus=Potri.019G019053 ID=Potri.019G019053.1.v4.1 annot-version=v4.1 MLKEKRKQSKDEDNDSSSRKRRKADLSKPVSFVSTATRTEPESSRSRPEGAYDVFLSFRGEDTRKTFTDHLYTALVQAGIRAFRDDDDLPRGEEISDHLL RAIQESKISIVVFSKGYASSRWCLNELVEILECKKRKTGQIVLPIFYDIDPSDVRKQTGSFAKAFDKHEKRFEEKLVKEWRKALEDAANLSGRSLNNMAN GHEAKFIKKIIKDVLNKLDPKYLYVPEHLVGMDKLAHDIFDFLSTATDDVRIAGIHGMPGIGKTTIAKVVFKQLCDRFEDSCFLSNINIETPKKLTGLVG FQTQLLREILKQGVPNFECVDRGKVLIKERLRGKRVLVVADDVAHLDQLKALMGERSWFGLGSRVIITTRDSNLLREADRTYQIEELKPDESLQLFSCHA FKDSKPAKDYIKLSKDAVDYCGGLPLALEVMGACLSGKNRDGWKCVIEKLRRIPNHDIQGRLRISFDALDGEELQNAFLDIACFFIDRKKEYVAKVLGAR CGYNPEVDLQTLHERSLIKVLGETVTMHDLLRDMGREVVRDKFPKEPGKRTRIWNQEDAWNVLEQQKGTVVVEGLALDVRASEAKALCAGSFAEMKRLNL LQINGVHLTGSFKLLSKELMWICWHRCPLKDFPSDFTADYLAVLDMQYSNLKELWKGKKILNRLKIFNLSHSRNLVKTPNLHSSSLEKLILKGCSSLVEV HQSIGHSTSLVFLNLKGCWSLKTLPESIRNVKSLETMKIYGCSQLEKLPEGMGDMKFLTELLADGIKTEQFLSSIGQLKYVKRLSLRGCSPTPPSCSLIS AGVSILKCWLPTSFTEWRLVKHLMLSNCGLSDRATNCVDFSGLFSLEKLDLSENKFSSLPYGIGFLPKLSHLVVQTCEYLVSIPDLPSSLCLLDASSCKS LERVRIPIESKKELCVNIFQSLSLEEIQGIEGLNNSFWNVSIERRSHSPNKLQKSVLEAMCNRGHGYRINFSLEHDELHEMPDWMSYRGEGCSLSFHIPP VFHGLVLWLEKGTHMYTYTNIIIIIRNKSNGRILFKDKRAQIGIHIFMQGWLRYISRSEMAMEDYCGDELELYISSEPTDYALRKGKSLKPSVKECGVHV IAGKSDSLKKSAVERDTVMLSPPLYHLLPHPHRGSITTSTPKQWCDFLLAELQNHSLGLLLLGREDLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.019G019053 [exp]	0	1
AT5G13220	ZIM	JAS1, TIFY9, JA...	TIFY DOMAIN PROTEIN 9, JASMONA...		Potri.001G062500 [exp]	2.00	0.9469
AT5G36930			Disease resistance protein (TI...		Potri.019G019710 [exp]	2.82	0.9084
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G010101 [exp]	4.00	0.9140
AT1G15060			Uncharacterised conserved prot...		Potri.010G119700 [exp]	4.69	0.9005
AT3G48310		CYP71A22	"cytochrome P450, family 71, s...		Potri.016G137400 [exp]	6.00	0.9165
					Potri.001G371850 [exp]	7.07	0.9135
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.012G113100 [exp]	7.74	0.8966
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261500 [exp]	8.71	0.8737
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.016G137600 [exp]	9.89	0.9124	CYP71AN3
AT5G17680			disease resistance protein (TI...		Potri.005G031101 [exp]	10.58	0.8924

Compare expression of checked genes

Potri.019G019053 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.