Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 530 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 513 / 6e-179 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 501 / 8e-174 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 482 / 1e-166 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28520 433 / 4e-148 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 424 / 2e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 424 / 2e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 407 / 5e-138 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 403 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 344 / 5e-113 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G020800 [exp] 859 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 751 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 749 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 575 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 566 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 533 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 533 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 533 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 405 / 7e-139 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014496 [exp] 681 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10032188 [exp] 582 / 0 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 551 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 525 / 0 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 518 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 516 / 4e-180 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 511 / 9e-178 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030667 [exp] 448 / 2e-153 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10005256 [exp] 452 / 9e-153 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014497 [exp] 340 / 4e-111 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.019G020700.1 pacid=42774164 polypeptide=Potri.019G020700.1.p locus=Potri.019G020700 ID=Potri.019G020700.1.v4.1 annot-version=v4.1 ATGAACCCAGCAGATATGTTTACTCAAGTAGGTTCTGTGATTGCAAGTGTTATGTTTGCTTGGGCCATGTTCAAGCAATATTGTCCGTATAGTGTACAAG AATATTTTGATAAATACTCCAAAAGGGCCTTCACTTTCGTTTACCCTTACATTCAAATTAGCTTCAATGAATTCACCGGCGATCGCTTCATGCGTAGTGA AGCTTACTCTGCCATTGAGAATTATCTTGGTTCTCGTTCATCTACGCAGGCAAAGCGGCTCAAGGCTGATGTTGTCAAGAACAGCCAGTCGGTTGTTCTT AGCATGGATGATTATGAAGAGGTTGGTGATGAATTCCAGGGAGTCAAACTTAGGTGGGCTTCAGGGAAACATATTTCCAAGACGCAATCTGTTTCTTTCT ATCCCGTAACGGATGAGAAGAAGTACTACAAGCTCACTTTCCATAAGAGACACCGGCAACTCATCCTCGGGGATTACTTGAATCATGTCTTGAAAGAGGG TAATGAAATCAAGGTGAGGAATCGTCAGAGGAAGCTTTACACTAACAGTGGATCATACTGGAGGCATGTGGTGTTTCAGCATCCGGCTAGTTTCGAGACG CTTGCAATGGAGGCAGAGAGGAAGCAGGAAATCGTTGATGATCTTGTCATATTCAGCACGGCTGAAGACTTCTATGCAAGAATTGGAAGGGCTTGGAAGC GAGGGTATCTGCTTTTCGGTCCACCAGGGACTGGTAAATCAACTATGATTGCAGCCATGGCCAATCTCTTAAACTACGATATATATGATCTTGAATTGAC TGCTGTGAAGGATAACACTGAGTTGAGAAAGCTACTGATGGAGACAACAACCAGGTCCATTATTGTGATTGAGGATATTGATTGTTCTCTTGACCTAACT GGTCAAAGGAAGAAGAAGAAGGAGGAAGAGGGGGAGAGAGATGAGAAGGATCCAAAGCCGAAGCTGCCCAAGGAAGAAGATAGCAAACAGAGTCAGGTCA CTCTTTCTGGGATTTTGAATTTTGTTGATGGACTTTGGTCAGCTTGCAGAGGAGAAAGACTGATTGTTTTCACGACTAATTTTGTGGAGAAACTTGATCC AGCTCTCATTAGGAAAGGAAGGATGGACAAGCACATAGAATTGTCCTATTGTAGCTTTGAAGCATTCCAGGTTTTGGCGAAGAACTACCTTCGGCTTGAA TCACACCACTTGTTTGCCAGAATCCAGGAGTTGTTGGGGGAAACCAAAATGACCCCTGCTGAAGTAGCAGAGCATTTGATGCCGAAGACTATTACTGGAG ACGCCAAGGTTTGCTTGGAGAGCCTAATAGGAGCACTCGAGAAGGCGAAAGAGGACGCTATACTGAAAGCAGAAGAAGAAGCAAAAGAAAAGGAGAAGGA GAGTGCTAGATTGAAAGCAGAAGAAGAGGCAAAAGAGAAAGAGAAAGAGAAAGCAAAAGCTGAAGAAGAGGCAAAAGAGAAGGATTCGTCAGCTGCAGAG AATGCAAAGAAGCAAGTAAAAGAAAATGGTTTCTGTGATAATGGAAATGGAGAACTGAATAACAAAGAAAATAAGCAGGAGGGCTTCAGCCACTAA
AA sequence Show only first row Show all	>Potri.019G020700.1 pacid=42774164 polypeptide=Potri.019G020700.1.p locus=Potri.019G020700 ID=Potri.019G020700.1.v4.1 annot-version=v4.1 MNPADMFTQVGSVIASVMFAWAMFKQYCPYSVQEYFDKYSKRAFTFVYPYIQISFNEFTGDRFMRSEAYSAIENYLGSRSSTQAKRLKADVVKNSQSVVL SMDDYEEVGDEFQGVKLRWASGKHISKTQSVSFYPVTDEKKYYKLTFHKRHRQLILGDYLNHVLKEGNEIKVRNRQRKLYTNSGSYWRHVVFQHPASFET LAMEAERKQEIVDDLVIFSTAEDFYARIGRAWKRGYLLFGPPGTGKSTMIAAMANLLNYDIYDLELTAVKDNTELRKLLMETTTRSIIVIEDIDCSLDLT GQRKKKKEEEGERDEKDPKPKLPKEEDSKQSQVTLSGILNFVDGLWSACRGERLIVFTTNFVEKLDPALIRKGRMDKHIELSYCSFEAFQVLAKNYLRLE SHHLFARIQELLGETKMTPAEVAEHLMPKTITGDAKVCLESLIGALEKAKEDAILKAEEEAKEKEKESARLKAEEEAKEKEKEKAKAEEEAKEKDSSAAE NAKKQVKENGFCDNGNGELNNKENKQEGFSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.019G020700 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.019G020800 [exp]	1.00	0.9502
AT3G25070		RIN4	RPM1 interacting protein 4 (.1...		Potri.002G245400 [exp]	6.63	0.8853	RIN4.1
AT3G63380			ATPase E1-E2 type family prote...		Potri.005G215600 [exp]	14.49	0.8513
AT4G21450			PapD-like superfamily protein ...		Potri.011G041900 [exp]	14.89	0.8207
AT4G13630			Protein of unknown function, D...		Potri.017G055100 [exp]	16.61	0.8612
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Potri.015G055000 [exp]	16.97	0.8463
AT3G14470			NB-ARC domain-containing disea...		Potri.018G017900 [exp]	18.00	0.8538	Pt-RGA.54
					Potri.017G111050 [exp]	18.13	0.8501
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.012G019900 [exp]	23.23	0.8378
AT5G61210		SNP33, ATSNAP33...	soluble N-ethylmaleimide-sensi...		Potri.012G066700 [exp]	24.81	0.8383

Compare expression of checked genes

Potri.019G020700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.