Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G40010 525 / 0 ASD, AATP1 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) AT3G28580 508 / 6e-177 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28510 493 / 8e-171 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28540 474 / 1e-163 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G28520 431 / 5e-147 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28610 424 / 3e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28600 424 / 3e-144 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G40000 411 / 2e-139 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G28570 404 / 1e-136 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT4G25835 340 / 3e-111 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G020700 [exp] 852 / 0 AT5G40010 531 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047950 [exp] 745 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.013G047900 [exp] 743 / 0 AT5G40010 537 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091500 [exp] 569 / 0 AT5G40010 582 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.015G067400 [exp] 561 / 0 AT5G40010 538 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012700 [exp] 528 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012601 [exp] 528 / 0 AT5G40010 566 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G012500 [exp] 528 / 0 AT5G40010 556 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Potri.004G091300 [exp] 402 / 1e-137 AT5G40010 441 / 2e-153 ATPase-in-Seed-Development, AAA-ATPase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014496 [exp] 677 / 0 AT5G40010 577 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10032188 [exp] 577 / 0 AT5G40010 497 / 4e-173 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015354 [exp] 545 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014498 [exp] 519 / 0 AT5G40010 598 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10042166 [exp] 518 / 1e-180 AT5G40010 526 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10015349 [exp] 513 / 7e-179 AT5G40010 536 / 0.0 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10004258 [exp] 505 / 2e-175 AT3G28580 507 / 1e-176 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10030667 [exp] 445 / 3e-152 AT5G40010 501 / 2e-174 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10005256 [exp] 449 / 1e-151 AT5G40010 501 / 4e-172 ATPase-in-Seed-Development, AAA-ATPase 1 (.1) Lus10014497 [exp] 341 / 1e-111 AT3G28580 463 / 7e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] PF14363 [poplar] [flax] AAA_assoc Domain associated at C-terminal with AAA
Representative CDS sequence Show only first row Show all	>Potri.019G020800.5 pacid=42774714 polypeptide=Potri.019G020800.5.p locus=Potri.019G020800 ID=Potri.019G020800.5.v4.1 annot-version=v4.1 ATGAACCCAGCAGATATGTTTACTCAAGTAGGTTCTGTGATTGCAAGTGTTATGTTTGCTTGGGCCATGTTCAAACAATATTGTCCGTATAGTGTACAAG AATATTTTGATAAATACTCCAAAAGGGCCTTCACTTTCGTTTACCCTTACATTCAAATTAGCTTCAATGAATTCACCGGCGATCGCTTCATGCGTAGTGA AGCTTACTCTGCCATTGAGAATTATCTTGGTTCTCGTTCATCTACGCAGGCAAAGCGGCTCAAGGCTGATGTTGTCAAGAACAGCCAGTCGGTTGTTCTT AGCATGGATGATTATGAAGAGGTTGCTGATGAATTCCAGGGAGTCAAACTTAGGTGGGCTTCAGGAAAACATATTTCCAAGACGCAATCTGTTTCTTTCT ATCCTGTAACGGATGAGAAGAAGTACTACAAGCTCACTTTCCATAAGAGACACCGGCAACTCATCCTCGGGGATTACTTGAAACATGTCTTGAAAGAGGG TAATGAAATCAAGGTGAGGAATCGTCAGAGGAAGCTTTACACTAACAGTGGATCATACTGGAGGCATGTGGTGTTTCAGCATCCGGCTAGTTTCGAGACG CTTGCCATGGAGGCAGAGAGGAAGCAGGAAATCGTTGATGATCTTGTCATTTTCAGCACGGCTGAAGACTTCTATGCAAGAATTGGAAGGGCTTGGAAGC GAGGGTATCTGCTTTTCGGTCCACCAGGGACTGGTAAATCAACTATGATTGCAGCCATGGCCAATCTTTTAAACTACGATATATATGATCTTGAACTGAC TGCTGTGAAGGATAACACTGAGTTGAGAAAGCTACTGATCGAGACAACAACCAGGTCCATTATTGTGATTGAGGATATTGATTGTTCTCTTGACCTAACT GGTCAAAGGAAGAAGAAGAAGGAGGAAGAGGGGCAGAGAGATGAGAAGGATCCAAAGCCGAAGCTGCCCAAGGAAGAAGATAGCAAACAGAGTCAGGTCA CTCTTTCTGGGATTTTGAATTTTGTTGATGGACTTTGGTCAGCTTGCAGAGGAGAAAGACTGATTGTTTTCACGACTAATTTTGTGGAGAAACTTGATCC AGCTCTCATTAGGAAAGGAAGGATGGACAAGCACATAGAATTGTCCTATTGTAGCTTTGAAGCATTCCAGGTTTTGGCGAAGAACTACCTTCGGCTTGAT TCACACCACTTGTTTGCCAGAATCCAGGAGTTGTTGGGGGAAACCAAAATGACCCCTGCTGAAGTAGCAGAGCATTTGATGCCGAAGACTATTACTGGAG ACGCCAAGGTTTGCTTGGAGAGCCTAATAGGAGCACTCGAGAAGGCGAAAGAGGACGCTATATTGAAAGCAGAAGAAGAAGCAAAAGAAAAGGAGGAGAG CGCTAGATTGAAAGCTGAAGAAGAGGCAAAAGAGAAAGAGAAAACAAAAGCTGAAGAAGAAGCAAAAGAGAAAGCAAAAGCTGAAGAAGAAGCAAAAGAG AAGGATTCGTCAGCTGCAGAGAATGCTAAGAAGCAAGCAAAAGAAAATGGTTTCTGTGATAATGGAAATGGAGAACTGAATAACAAAGAAAATAAGCAGG AGGGCTTCAGCCACTAA
AA sequence Show only first row Show all	>Potri.019G020800.5 pacid=42774714 polypeptide=Potri.019G020800.5.p locus=Potri.019G020800 ID=Potri.019G020800.5.v4.1 annot-version=v4.1 MNPADMFTQVGSVIASVMFAWAMFKQYCPYSVQEYFDKYSKRAFTFVYPYIQISFNEFTGDRFMRSEAYSAIENYLGSRSSTQAKRLKADVVKNSQSVVL SMDDYEEVADEFQGVKLRWASGKHISKTQSVSFYPVTDEKKYYKLTFHKRHRQLILGDYLKHVLKEGNEIKVRNRQRKLYTNSGSYWRHVVFQHPASFET LAMEAERKQEIVDDLVIFSTAEDFYARIGRAWKRGYLLFGPPGTGKSTMIAAMANLLNYDIYDLELTAVKDNTELRKLLIETTTRSIIVIEDIDCSLDLT GQRKKKKEEEGQRDEKDPKPKLPKEEDSKQSQVTLSGILNFVDGLWSACRGERLIVFTTNFVEKLDPALIRKGRMDKHIELSYCSFEAFQVLAKNYLRLD SHHLFARIQELLGETKMTPAEVAEHLMPKTITGDAKVCLESLIGALEKAKEDAILKAEEEAKEKEESARLKAEEEAKEKEKTKAEEEAKEKAKAEEEAKE KDSSAAENAKKQAKENGFCDNGNGELNNKENKQEGFSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.019G020800 [exp]	0	1
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Potri.019G020700 [exp]	1.00	0.9502
AT3G59880			unknown protein		Potri.017G002100 [exp]	9.59	0.8112
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.012G019900 [exp]	11.04	0.8212
AT4G31980			unknown protein		Potri.003G206601 [exp]	12.96	0.7843
AT1G01340		ACBK1, ATCNGC10	cyclic nucleotide gated channe...		Potri.002G170000 [exp]	17.83	0.8013
AT1G24530			Transducin/WD40 repeat-like su...		Potri.010G050900 [exp]	19.62	0.7622
AT1G34750			Protein phosphatase 2C family ...		Potri.005G164600 [exp]	22.11	0.8122
AT3G51580			unknown protein		Potri.019G058400 [exp]	23.66	0.8040
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.015G095900 [exp]	26.26	0.7813	Pt-PPD3.1
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.010G063500 [exp]	27.45	0.7715	Pt-AMT1.4,1

Compare expression of checked genes

Potri.019G020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.