Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G29000 305 / 7e-101 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) AT3G04450 301 / 1e-98 GARP Homeodomain-like superfamily protein (.1.2) AT4G28610 268 / 1e-85 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT2G20400 193 / 3e-57 GARP myb-like HTH transcriptional regulator family protein (.1) AT2G01060 181 / 6e-54 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G06800 180 / 2e-52 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G13040 172 / 9e-49 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT4G13640 145 / 3e-40 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 142 / 4e-39 GARP Homeodomain-like superfamily protein (.1.2) AT5G18240 143 / 3e-38 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G048000 [exp] 659 / 0 AT5G29000 321 / 4e-106 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Potri.002G257800 [exp] 397 / 6e-135 AT4G28610 332 / 6e-110 phosphate starvation response 1 (.1) Potri.006G191000 [exp] 182 / 8e-53 AT5G06800 252 / 2e-80 myb-like HTH transcriptional regulator family protein (.1.2) Potri.014G000700 [exp] 181 / 2e-52 AT3G13040 308 / 6e-101 myb-like HTH transcriptional regulator family protein (.1.2) Potri.007G003200 [exp] 182 / 3e-52 AT3G13040 330 / 1e-108 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G047900 [exp] 180 / 3e-52 AT5G06800 233 / 3e-73 myb-like HTH transcriptional regulator family protein (.1.2) Potri.006G000800 [exp] 177 / 1e-51 AT2G01060 321 / 1e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.016G001100 [exp] 175 / 3e-51 AT2G01060 318 / 5e-109 myb-like HTH transcriptional regulator family protein (.1.2) Potri.001G228500 [exp] 157 / 1e-43 AT5G06800 179 / 3e-52 myb-like HTH transcriptional regulator family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008197 [exp] 436 / 4e-151 AT5G29000 318 / 3e-105 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10029607 [exp] 337 / 1e-111 AT5G29000 279 / 2e-89 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10032778 [exp] 319 / 2e-105 AT5G29000 272 / 2e-87 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10024938 [exp] 303 / 1e-98 AT4G28610 314 / 2e-103 phosphate starvation response 1 (.1) Lus10022886 [exp] 299 / 3e-97 AT4G28610 310 / 7e-102 phosphate starvation response 1 (.1) Lus10022885 [exp] 293 / 5e-95 AT4G28610 299 / 2e-97 phosphate starvation response 1 (.1) Lus10027958 [exp] 214 / 3e-65 AT5G29000 132 / 7e-35 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4) Lus10035705 [exp] 184 / 1e-52 AT3G13040 372 / 4e-125 myb-like HTH transcriptional regulator family protein (.1.2) Lus10037296 [exp] 177 / 4e-50 AT3G13040 364 / 5e-122 myb-like HTH transcriptional regulator family protein (.1.2) Lus10039124 [exp] 171 / 6e-50 AT2G01060 350 / 6e-122 myb-like HTH transcriptional regulator family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.019G020900.7 pacid=42773700 polypeptide=Potri.019G020900.7.p locus=Potri.019G020900 ID=Potri.019G020900.7.v4.1 annot-version=v4.1 ATGATTAGAAATCCAGCATCTCAGCAGGCATCACCATTGAGTTCTGGTAATGGGAGTGTTGGGCACTTGGTTTCATCATCGTCTAGATTTACAAATGATA CGAGTGTTTCAGCAGTTTCACCACAAGGAAAGCAGTCTCATAATTCTCCATTCATTTCTCAGTCACTAAGGGATGGAGGAAATTTTCCACCAACCCATTA TTCTCATTCAGAAGGGCAATCCACAGCATTCATTAACCACTCTGATGACAACAAGGGTCTCTCCTGGCCTATAGATCCACTTCAGGAATTCATTAATTTC GTTGAAAATGTCCCTGTCCAAAATGGTCAGGTGGAAAGCACTGCTGGTGTCATTGCATCGGAGGATCATGCTAAGAGAACAGACTGGCAAGAGTGGGCAG ATCAGTTGATCTCTGTTGATGATGAACTGGAACCAAATTGGAGTGAAATTCTGAATGATGTCAACATGAAAGATTCCAAACAGAAGATGTTGTCTCCTAA TAACTCAGTCCAACAACCCCTAATTCATCAGCATCAAACTGCTCATAGTGGAGAAGTATGTGCTGTTACTAATCCACTGTTGGCTGCACCACCAACAAAA TCTCGAATGCGCTGGACACCAGAACTTCATGAAGCTTTTGTGGAAGCTGTCAATCAGCTTGGGGGTAGTGAAAGGGCTACTCCCAAGGGTGTCTTAAAGC AGATGAATGTTGAAGGCTTGACTATCTATCACGTCAAAAGCCACCTCCAGAAGTACAGAACAGCCAGATATAAACCAGAGTCATCTGAAGGAACTTCAGA AAAAAAGTTGAGTCCCATTGAAGAAATGAAATCTCTAGACTTGAAGACGAGCATGGAGATCTCAGAAGCTTTGCGATTGCAAATGGAAGTCCAGAAGCAA CTCCACGAACAACTTGAGATCCAGAGAAATTTACAATTGAGGATTGAGGAACAGGGGAGGTATCTTCAAGAGATGTTTGAGAAACAAAAAAAGATGGAGG GTGACAGGTCAAAGGCTCCTCCCCCCTCCCAAAACGACCCTTCCCTTCTACAATCAAAGTTAGAGCAGTCACCTGCAAATGACAAATTAGAAACCTCAGA TCTGGACTGTGTCAAAACAAGGTTTGACACATGTAATGCGAGTGCTTTACTAGAAGAAAGCTCCCAGAGTATAAACAGAAAGCAAAAGGCACCAGAGGAC CGAAACTGTCAGGTTGTAGACAAAAATGAAGAGAAGACCAGTTTAGCACCAGTGAAACGACCAAGAACAGATGAAGCAACAGCATTGTCAGCCGAGCCTG CATCCAATTGA
AA sequence Show only first row Show all	>Potri.019G020900.7 pacid=42773700 polypeptide=Potri.019G020900.7.p locus=Potri.019G020900 ID=Potri.019G020900.7.v4.1 annot-version=v4.1 MIRNPASQQASPLSSGNGSVGHLVSSSSRFTNDTSVSAVSPQGKQSHNSPFISQSLRDGGNFPPTHYSHSEGQSTAFINHSDDNKGLSWPIDPLQEFINF VENVPVQNGQVESTAGVIASEDHAKRTDWQEWADQLISVDDELEPNWSEILNDVNMKDSKQKMLSPNNSVQQPLIHQHQTAHSGEVCAVTNPLLAAPPTK SRMRWTPELHEAFVEAVNQLGGSERATPKGVLKQMNVEGLTIYHVKSHLQKYRTARYKPESSEGTSEKKLSPIEEMKSLDLKTSMEISEALRLQMEVQKQ LHEQLEIQRNLQLRIEEQGRYLQEMFEKQKKMEGDRSKAPPPSQNDPSLLQSKLEQSPANDKLETSDLDCVKTRFDTCNASALLEESSQSINRKQKAPED RNCQVVDKNEEKTSLAPVKRPRTDEATALSAEPASN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.019G020900 [exp]	0	1
AT1G77920	bZIP		bZIP transcription factor fami...		Potri.002G090700 [exp]	1.41	0.8890	TGA3.1
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	2.44	0.8851
AT3G03560			unknown protein		Potri.013G073400 [exp]	4.89	0.8499
AT4G13970			zinc ion binding (.1)		Potri.014G054600 [exp]	4.89	0.8772
AT3G02050		ATKT4, ATKUP3, ...	K+ uptake transporter 3, ARABI...		Potri.002G237500 [exp]	6.92	0.8095	Pt-KUP3.2
AT5G59830			unknown protein		Potri.009G027800 [exp]	8.66	0.8547
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.014G134900 [exp]	9.48	0.8348	NHX1.2
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.013G048000 [exp]	10.00	0.8467
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Potri.008G147400 [exp]	10.24	0.8168	Pt-KUP6.1
AT5G06950	bZIP	TGA2, AHBP-1B	bZIP transcription factor fami...		Potri.006G039000 [exp]	10.58	0.8770

Compare expression of checked genes

Potri.019G020900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.