Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33260 567 / 0 Tryptophan/tyrosine permease (.1) AT5G19500 103 / 4e-23 Tryptophan/tyrosine permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G221900 [exp] 124 / 2e-30 AT5G19500 141 / 2e-36 Tryptophan/tyrosine permease (.1) Potri.001G224950 [exp] 124 / 2e-30 AT5G19500 606 / 0.0 Tryptophan/tyrosine permease (.1) Potri.008G040400 [exp] 42 / 8e-05 AT5G19500 58 / 2e-11 Tryptophan/tyrosine permease (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036099 [exp] 133 / 2e-33 AT5G19500 588 / 0.0 Tryptophan/tyrosine permease (.1) Lus10041401 [exp] 117 / 6e-28 AT5G19500 175 / 1e-48 Tryptophan/tyrosine permease (.1) Lus10036527 [exp] 113 / 1e-26 AT5G19500 173 / 3e-48 Tryptophan/tyrosine permease (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF03222 [poplar] [flax] Trp_Tyr_perm Tryptophan/tyrosine permease family
Representative CDS sequence Show only first row Show all	>Potri.019G031800.1 pacid=42773416 polypeptide=Potri.019G031800.1.p locus=Potri.019G031800 ID=Potri.019G031800.1.v4.1 annot-version=v4.1 ATGTTTCATCTTTCCCACAACCTATCCAAACCCAATTCAATCACATGCTCAAGATTCAATCTTCAACCCCACAACACTTCCAGGCTCCCCATTTCCCACA TTACCCCACCCAGGAAAGTTACTTCATTTTCTAAAAACCCTAACATTCTCATCCCTAGGTGCACACCAGAAGATACCATTTCACTTTCCATCACTACTAC TCGTAAGGATAGAGCAGACGATGGTAAATTTACCAAGGAAAATGAAGTTATAGTATTAGAAACCCCAGAAGGAAGTAAAAAGAATTTCTGGGGTGCTGTC AGTTTGATTATTGGCACTGCTGTAGGGCCTGGAATGCTGGGCTTACCAACCGCAACTATAAGGTCTGGTTCTTTTACATCAACCATTGCCATCATCCTTT GTTGGGTTTATGTAATCTTCTCTATCATTCTTGTTGCTGAGCTTAGTTTTGCTGCTATGCAAGAAGATGGAGTTGCAGAGGTGAGCTTTACTGGCCTTGC AACAAAAGCATTAGGAAGCAAATTTGGTGCTTTTGTGGCGGTGGTTTATGCTAGCTTAAGTTTTTCTTTGCTAGTAGCATGTGTTTCAGGCATTGGTTCA ATAGTATCACAGTGGTTTCCATGGATGAATGTTGTGTTGGCTCATGCTTTGTTTCCTGTTGCTGCTGGGATTGTAATTGCGTTCTTCCCTTTTAAGGTCA TTGATACTGCTAACAGGCTTTTATGCTTGCTCATGCTTTTCTCCATAACTTCACTGGTAGCTATTGGTTTATCTGTGGCCAGAACAAATATATTAACCTC CCTTGTTCCCACCTCGTTGAGTATTTCAACAATCTTGCCTGCTATCCCTGTAACTGTACTTACGTTGGGGTTCCATGTTATCACCCCTTTTATATGTAAG ATTGCTGGGAATTCTGTATCTGAGGCTAGAAAAGCAGTGCTGATTGGTGGGGCTGTTCCTTTGATAATGGTTTTGTCATGGAATTTGATTGTTTTGGGGC TTGCTGGTGCTCACACAGCCACCTCCTCCAATGACCCAATCTCTCTCTTGCTCTCTGTCAATCCTTCTGCTTTATCTGCTGTCCAGGGCTTTGCTTTTTC AGCTTTGGCAACTAGCTTGATAGGTTATGCAGTCAGCTTTCCGAGACAGCTTCTTGATACCTTGGAGTTGATTTTCACAAAAACTAAATCTGAAAAACAG ATTCACACTCAATGTCAAATATTTGCTAATGGGGATAGTGCTGGTAGAATTGGATTCGTAACCTTTTCTGGTCGGCATAATCTTGGAAATACAGGGAGGG CTTCATTTGATGGAACAAGGTGTTTTGCTGCATCAGAAGTGAAACCACCATCAAGCACGGCCGAGTCTAATGCATTCCACCATAAATTTGTAATGATGCT TGTACTTGGTGTTCCCATTCTTATAGGATCCTTCTTTCGCTCAACCTTTTCAAGAGCTCTTGATTTTGCTGGAGTTTATGCAAATTGCTTCCTGTTTGGC ATACTTCCTCCAGCAATGGCATATGTACAGCAATCCAGGAAGAAGCTCAGGTCATCTATTCTTCCAGGGGGAGATATCACTCTTCTACTACTTTTTAGCA TTGCTGTCATTTTGGGGATTTGGCATTAG
AA sequence Show only first row Show all	>Potri.019G031800.1 pacid=42773416 polypeptide=Potri.019G031800.1.p locus=Potri.019G031800 ID=Potri.019G031800.1.v4.1 annot-version=v4.1 MFHLSHNLSKPNSITCSRFNLQPHNTSRLPISHITPPRKVTSFSKNPNILIPRCTPEDTISLSITTTRKDRADDGKFTKENEVIVLETPEGSKKNFWGAV SLIIGTAVGPGMLGLPTATIRSGSFTSTIAIILCWVYVIFSIILVAELSFAAMQEDGVAEVSFTGLATKALGSKFGAFVAVVYASLSFSLLVACVSGIGS IVSQWFPWMNVVLAHALFPVAAGIVIAFFPFKVIDTANRLLCLLMLFSITSLVAIGLSVARTNILTSLVPTSLSISTILPAIPVTVLTLGFHVITPFICK IAGNSVSEARKAVLIGGAVPLIMVLSWNLIVLGLAGAHTATSSNDPISLLLSVNPSALSAVQGFAFSALATSLIGYAVSFPRQLLDTLELIFTKTKSEKQ IHTQCQIFANGDSAGRIGFVTFSGRHNLGNTGRASFDGTRCFAASEVKPPSSTAESNAFHHKFVMMLVLGVPILIGSFFRSTFSRALDFAGVYANCFLFG ILPPAMAYVQQSRKKLRSSILPGGDITLLLLFSIAVILGIWH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33260			Tryptophan/tyrosine permease (...		Potri.019G031800 [exp]	0	1
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G312800 [exp]	8.83	0.9511
AT2G47240		CER8, LACS1	LONG-CHAIN ACYL-COA SYNTHASE 1...		Potri.002G192400 [exp]	9.69	0.9534
AT3G26060		ATPRXQ ,ATPRX Q	peroxiredoxin Q, Thioredoxin s...		Potri.018G063300 [exp]	14.73	0.9249	Pt-PRXQ.2,PtrcPrx_Q.2
AT1G33540		SCPL18	serine carboxypeptidase-like 1...		Potri.001G291300 [exp]	18.11	0.9408
AT1G55230			Family of unknown function (DU...		Potri.001G009000 [exp]	19.05	0.9418
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.015G065600 [exp]	24.28	0.9328
AT1G75280			NmrA-like negative transcripti...		Potri.013G103850 [exp]	26.92	0.9407
AT5G38610			Plant invertase/pectin methyle...		Potri.003G086600 [exp]	34.64	0.9207
AT1G27950		LTPG1	glycosylphosphatidylinositol-a...		Potri.003G172400 [exp]	36.87	0.9337
AT1G53160	SBP	SPL4	squamosa promoter binding prot...		Potri.001G398200 [exp]	40.81	0.9309

Compare expression of checked genes

Potri.019G031800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.