Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	MYR1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04030 450 / 2e-157 GARP Homeodomain-like superfamily protein (.1.2.3) AT5G18240 449 / 7e-157 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT4G13640 214 / 1e-66 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 205 / 6e-63 GARP Homeodomain-like superfamily protein (.1.2) AT1G69580 205 / 2e-62 GARP Homeodomain-like superfamily protein (.1.2) AT1G79430 185 / 2e-54 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT5G45580 157 / 3e-45 GARP Homeodomain-like superfamily protein (.1) AT3G12730 153 / 5e-44 GARP Homeodomain-like superfamily protein (.1) AT2G01060 150 / 3e-42 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT5G29000 142 / 2e-38 GARP PHL1 PHR1-like 1, Homeodomain-like superfamily protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G060200 [exp] 748 / 0 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.017G054800 [exp] 230 / 1e-72 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 226 / 6e-71 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.008G087600 [exp] 219 / 3e-68 AT1G69580 276 / 2e-91 Homeodomain-like superfamily protein (.1.2) Potri.010G167901 [exp] 212 / 3e-65 AT1G69580 262 / 5e-86 Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 179 / 1e-52 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 179 / 3e-52 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.001G133400 [exp] 173 / 6e-51 AT5G45580 220 / 2e-71 Homeodomain-like superfamily protein (.1) Potri.003G100100 [exp] 162 / 6e-47 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002629 [exp] 577 / 0 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10020264 [exp] 572 / 0 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10007132 [exp] 226 / 1e-70 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 225 / 2e-70 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10037169 [exp] 222 / 1e-69 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 217 / 1e-67 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 183 / 1e-52 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 182 / 1e-52 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10012142 [exp] 162 / 1e-46 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1) Lus10010404 [exp] 159 / 2e-45 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.019G032700.1 pacid=42774336 polypeptide=Potri.019G032700.1.p locus=Potri.019G032700 ID=Potri.019G032700.1.v4.1 annot-version=v4.1 ATGTACCAGCATCACCAGCATCAAGGAAAGAACATCCACTCTTCTTCAAGAAATTCAATCCCTCCTGAAAGACATCTGTTCCTGCAAGTTGGGAATGGCC CTGGGGATTCTGGACTTGTCCTCTCAACTGATGCAAAGCCTAGACTAAAGTGGACAACTGATCTTCACGAGCGGTTCATAGAAGCAGTAAATCAGCTTGG AGGAGCAGACAAGGCCACTCCAAAAACAGTTATGAAACTTATGGGAATTCCTGGACTTACCTTGTATCACCTAAAGAGTCATCTTCAGAAGTACAGACTC AGCAAGAACCTCCATGGACAAGCTAATAGTGGGATCAACAAGAGTGGTACTGTTGCTGTTGTGGGAGATAGAATGCCTGAAGTAAATGCAACCCACATTA ACAATCTAAGCATCGGATCACAAACAAATAAAAGCTTACATTTCAGTGAAGCACTACAGGTGCAAATTGAAGTGCAAAGAAGACTACATGAACAGCTTGA GGTGCAGAGACATTTACAGCTCCGCATAGAAGCACAAGGAAAATACCTGCAGTCAGTGCTAGAGAAAGCCCAGGAAACACTTGGAAGGCAAAATTTAGGT ACGGTGGGACTTGAAGCTGCCAAAGTTCAACTCTCTGAACTGGTGTCCAAAGTGTCCTCTAAATGCCTGAATTCTGCATTTTCGGAGCTGAAAGATCTGC AGGGTCTGTGCCCACCGCTAACACAACCGACCCATCCCAATGATTTTTCAATGGACAGCTGCCTGACCTCAATTGAAGGGTCACAAAAGGAGCAAGAAAT ACACAACACTGGAATGGGGTTGAGGCCCTATAATGGTAATGCTCTCTTGGAGCCAAAAGTGATTGCAGGAGAACATGCGCTCCAACAAACTGAACTCAAG TGGGGTGAAGACCAAAGAGATAACAAAATGTTCCTCAGCTCAATGAGAAATGATACAGATAGGAGAACCTTTTCAGCAGAAAGAAGCTGCAGTAATCTAT CCATCGGTGTCGGACTCCAAGGAGAAAGGGGGAATGTGAGCAGTAGCTTTGCTGAGGCAAGATTTAAGGGAAGGAGTGAGGATGACAGCTTCCAAGATAA GACTAACAGAAGGATAGATGCAATTAAACTAGAGAACGAGAAATTGTCCCCGGGGTATAGGTTATCTTATTATGCTACTAAGCTGGATCTGAATTCCCAC GGTGAAATTGATGCTGCTTCAGGTTGCAGGCAGCTCGACTTGAATGGTTTCAGCTGGAACTGA
AA sequence Show only first row Show all	>Potri.019G032700.1 pacid=42774336 polypeptide=Potri.019G032700.1.p locus=Potri.019G032700 ID=Potri.019G032700.1.v4.1 annot-version=v4.1 MYQHHQHQGKNIHSSSRNSIPPERHLFLQVGNGPGDSGLVLSTDAKPRLKWTTDLHERFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL SKNLHGQANSGINKSGTVAVVGDRMPEVNATHINNLSIGSQTNKSLHFSEALQVQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLG TVGLEAAKVQLSELVSKVSSKCLNSAFSELKDLQGLCPPLTQPTHPNDFSMDSCLTSIEGSQKEQEIHNTGMGLRPYNGNALLEPKVIAGEHALQQTELK WGEDQRDNKMFLSSMRNDTDRRTFSAERSCSNLSIGVGLQGERGNVSSSFAEARFKGRSEDDSFQDKTNRRIDAIKLENEKLSPGYRLSYYATKLDLNSH GEIDAASGCRQLDLNGFSWN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.019G032700 [exp]	0	1	MYR1.1
AT5G54660			HSP20-like chaperones superfam...		Potri.011G131800 [exp]	2.23	0.8764
AT1G19715			Mannose-binding lectin superfa...		Potri.002G030400 [exp]	4.47	0.8617
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Potri.008G055100 [exp]	10.39	0.8386
AT3G57810			Cysteine proteinases superfami...		Potri.008G177400 [exp]	12.16	0.8375
AT1G10380			Putative membrane lipoprotein ...		Potri.010G040500 [exp]	13.49	0.8247
AT5G21910			unknown protein		Potri.006G220500 [exp]	14.66	0.8255
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.008G081800 [exp]	17.88	0.8118	APL.2
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.010G174100 [exp]	18.00	0.8252
AT3G58720			RING/U-box superfamily protein...		Potri.014G139400 [exp]	23.91	0.8079
AT1G76040		CPK29	calcium-dependent protein kina...		Potri.005G245000 [exp]	23.91	0.8013

Compare expression of checked genes

Potri.019G032700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.