Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13540 235 / 5e-77 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT3G61250 201 / 1e-62 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G09460 198 / 1e-62 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT3G02940 196 / 1e-60 MYB ATMYB107 myb domain protein 107 (.1) AT4G21440 196 / 4e-60 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT1G22640 190 / 3e-59 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT5G15310 191 / 6e-59 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G10280 192 / 7e-59 MYB ATMYB92, AtMYB64 myb domain protein 92 (.1) AT4G28110 189 / 2e-58 MYB ATMYB41 myb domain protein 41 (.1) AT4G38620 189 / 2e-58 MYB AtMYB4 myb domain protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G036340 [exp] 577 / 0 AT3G13540 240 / 6e-79 myb domain protein 5 (.1) Potri.019G036160 [exp] 563 / 0 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.013G056400 [exp] 417 / 1e-147 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.013G056500 [exp] 407 / 7e-144 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.003G219900 [exp] 262 / 2e-86 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.001G005100 [exp] 260 / 8e-86 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.002G173900 [exp] 212 / 3e-67 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.014G100800 [exp] 207 / 1e-65 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.001G086700 [exp] 196 / 1e-61 AT5G49330 203 / 6e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039173 [exp] 230 / 1e-74 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10013762 [exp] 228 / 1e-73 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10000411 [exp] 200 / 1e-62 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 195 / 1e-60 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10009448 [exp] 193 / 4e-60 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10030378 [exp] 193 / 1e-59 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10001548 [exp] 192 / 1e-59 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10041142 [exp] 192 / 2e-59 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10000470 [exp] 192 / 3e-59 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10036472 [exp] 192 / 4e-59 AT5G10280 307 / 1e-103 myb domain protein 92 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G036400.1 pacid=42774369 polypeptide=Potri.019G036400.1.p locus=Potri.019G036400 ID=Potri.019G036400.1.v4.1 annot-version=v4.1 ATGAGGAATCTATGCTCAACAACTTCAACAAGGAGCAGGAGTGTACCTACACCATGTTGTAGCAAGGTGGGCATAAAGAAGGGGCCATGGACACCAGAAG AGGATGAGCTCTTGGCAAACTACATCAGGAAAGAAGGTGAAGGGCGATGGCGCACGCTCCCAAAGCGGGCAGGACTTCTCAGGTGTGGTAAGAGCTGCCG CCTCCGCTGGATGAACTATCTCAGGCCTTCTGTTAAGAGAGGGCGTATTGCCCCAGATGAGGAAGATCTCATTCTTAGGCTTCACAGGTTGCTTGGTAAC AGGTGGTCTATGATAGCTGGGAGGATACCAGGGCGCACAGATAATGAGATTAAGAATTACTGGAATACCTGTCTCAGCAAGAAGCTCATTAGCCAAGGAA TAGACCCTAGGACTCACAAGCCTTTAAAACCTAACCCCGATTCCTCAGAAATTGCAAATGTTCCAGTCCAGAATTCTAACCCTAAATCTTCTCCAGTGGA TGAGAATGGGAGGGTCTATCGAACTGTAGCCACTAGAGTAAGTGAAAACTTTACAGTGACTAACCTGGATCAGTCTCCTAACCAGGTTGCTGCTGATGCT ACAGAAAACTGGCCAAATCGTGATGGTTTTAATATGGGATCATTACAAAGTGGTTATGGACGAAAAAATGAAGATGATTTCATTGAAGATATTGGAAATG AGGACACTTTCTCCTCATTTCTGGATTCCTTGCTCAATGAAAATGTGTTCGTGTATCAACAACGACAACAGTTACAGCAGCAAAATATGTTTGGACCTTC TTCTAAGCTTGCGGTTTCTTCTTCACAAATTCTCAGTCACGAAAACATTTGGGAAGCTGAAGTCTCGCCTCCAATGGCAGCCTTAGGTGACAAAGGCGTG GGTGGGGCTTCAAATCGTCTTCCAGTTTGA
AA sequence Show only first row Show all	>Potri.019G036400.1 pacid=42774369 polypeptide=Potri.019G036400.1.p locus=Potri.019G036400 ID=Potri.019G036400.1.v4.1 annot-version=v4.1 MRNLCSTTSTRSRSVPTPCCSKVGIKKGPWTPEEDELLANYIRKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYLRPSVKRGRIAPDEEDLILRLHRLLGN RWSMIAGRIPGRTDNEIKNYWNTCLSKKLISQGIDPRTHKPLKPNPDSSEIANVPVQNSNPKSSPVDENGRVYRTVATRVSENFTVTNLDQSPNQVAADA TENWPNRDGFNMGSLQSGYGRKNEDDFIEDIGNEDTFSSFLDSLLNENVFVYQQRQQLQQQNMFGPSSKLAVSSSQILSHENIWEAEVSPPMAALGDKGV GGASNRLPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036400 [exp]	0	1
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036340 [exp]	1.41	0.9941
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.019G036160 [exp]	2.44	0.9787
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.013G045000 [exp]	3.16	0.8818
AT2G37975			Yos1-like protein (.1)		Potri.016G109500 [exp]	3.46	0.9116
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G113350 [exp]	7.34	0.8524
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.011G113000 [exp]	9.79	0.8331
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.011G114000 [exp]	10.48	0.8332
AT5G61500		ATATG3	autophagy 3 (APG3) (.1)		Potri.001G126500 [exp]	10.95	0.8404
AT1G17170		ATGSTU24	Arabidopsis thaliana Glutathio...		Potri.011G113400 [exp]	11.66	0.8233
AT3G22370		AtHSR3, ATAOX1A...	hyper-sensitivity-related 3, a...		Potri.012G001500 [exp]	15.29	0.8206

Compare expression of checked genes

Potri.019G036400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.