Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 402 / 3e-122 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 345 / 1e-99 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 237 / 4e-65 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G58807 184 / 4e-47 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G59218 184 / 4e-47 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 184 / 4e-47 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT5G48620 178 / 1e-45 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G35450 175 / 1e-44 Disease resistance protein (CC-NBS-LRR class) family (.1) AT5G43470 169 / 1e-42 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58410 165 / 2e-41 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G169800 [exp] 896 / 0 AT3G14470 393 / 1e-118 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170400 [exp] 877 / 0 AT3G14470 401 / 3e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.014G012000 [exp] 858 / 0 AT3G14470 367 / 7e-109 NB-ARC domain-containing disease resistance protein (.1) Potri.014G007600 [exp] 858 / 0 AT3G14470 381 / 3e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135800 [exp] 857 / 0 AT3G14470 403 / 3e-122 NB-ARC domain-containing disease resistance protein (.1) Potri.014G005600 [exp] 855 / 0 AT3G14470 362 / 3e-107 NB-ARC domain-containing disease resistance protein (.1) Potri.004G170700 [exp] 834 / 0 AT3G14470 409 / 3e-124 NB-ARC domain-containing disease resistance protein (.1) Potri.018G135700 [exp] 811 / 0 AT3G14470 380 / 2e-114 NB-ARC domain-containing disease resistance protein (.1) Potri.003G015500 [exp] 810 / 0 AT3G14470 402 / 1e-122 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 452 / 6e-140 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 431 / 6e-131 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 431 / 3e-130 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 418 / 1e-124 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005218 [exp] 400 / 1e-120 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 400 / 6e-120 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 389 / 2e-115 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10022351 [exp] 387 / 2e-114 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 377 / 5e-111 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 341 / 5e-99 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.019G036850.1 pacid=42774506 polypeptide=Potri.019G036850.1.p locus=Potri.019G036850 ID=Potri.019G036850.1.v4.1 annot-version=v4.1 ATGGCGGAAATACTTTTGTCTGCACTTTCTGTTGAGTTTGTTTATGGATTTTTGGATCCCTTTAGCGCTCTGAATTTGAGTGAGGCACTGGAAATCAAGG GACAGCTGGAGAGGCTGCGTGAATCATCAATCCTGGTTCAGGCCATGTTACAAGATATTGAGGAAAGACAACTGACAGAGGAGTCCTTGAAGCACTGCTT GGATCTGAAAGATAAAGTTTTCGATGCTGAGGATGTGATAGACGAGTTTGTTTATGAGGCCCTCCAGCGAAAGGTTGAGATCCGAAGCCTGAGGAAGAAG GTACGCAGGTTCTTTTCGCTTTCCAACCCCATTTTGTTCTTGTTGCAACTGAAACGGAAGCTTATGCGGAACAATAGATCGCTGGATAAACTGAAAAATG AAGCCGCTGGATTTGGGCTTCGAGTTGCATCTTTTAGTACAATTCTCGAAAATATTCCGAACCAAGAGACAGACTCCTTTTTTGACCACCCAGAACTTAT AAAAGGAAGGGAGGCCGATGTCTCTAAAGTTATCAACTTGCTGACCAGCTCAAGCAATCAACAAGATCTTTCTGTTATTCCTATAGTGGGCATGGCAGGT ATAGGAAAGACAACGTTGGCAAAACTGGTGTTTGATGCTGTTGACGACGGAGAATTTTTCGATGAAACATTATGGGTCTCTGTTTCTGATGATTTTGACC ATCAGAATATTTTGGGAAGTGTGCTGGTTGCTCTTTCGAGAAACATGGGAAGAGTAGAGAACATTGATGTGATGGTTGACCGTCTTCAGCAGGAGTTGGA AGGGAAGAAATTTCTTCTTGTACTTGATGATGTGTTGAATGAAAATTATGAGAAGTGGGACAGGTTACGGAATTTTTTCTTGGGAATTAGTGGAATTAAT GGGAGTGCCATCATTGTTACAACTCATAGTAGGAGGGTGGCATCTATAATGGAGACATCTCCCGGGTGCAGGTATGAGCTGAAACCACTATCTTGTGACG AATCTTGGTCCATTATTAGTGAAGCGGTGTCTGGAAATGGGGGAGGACCAATAACTTCTGACTTGGAAGCTATTGGGAAAGAGATTGCAGAAAAATGTGA AGGTCTTCCATTAGCTGCAAGGGCTTTCGGGAGAATGATGCGCTTGAGATTCGGGATAGAAGAATGGTCATTGCTCAGAAATCTTCATGCTTGGGATGCA CTAGTTAATCAAATTTTACTTCCAATAAAGCTAAATTATGATTGCCTTCCGTTGACTGTTAGACGGTGTTTGGTATATTGTTCAATTTTTCCCAAAGGTA CTAAAATAGGAAAGGAACAGTTGATTGAACTTTGGATGGCTGAAGGGTTTCTTGGGACATCTAACGAAAGGATGGAAGATAGAGGTAATCAATGTTTTAG CTACTTAATTGACAATTATTTTTTGGTAGATGTGGAAAGAGATGAGTTGGAGAATATTAGAAGTTGCAAGATGAATAATATTGTGCATGATCTTGCATCT TATCTTTCAAAATATGAAGTGAAGAATTCGGAGGCTTATCCTGGTGTTGATGATTTATCTCATATTCGTTATGCAAATCTTAGTTGTGACACAGAAAATG CACAGGAGTTCTTCAAAACTGGGGGTAGAAAATTACGTTCTTTGTTTTCACGTGATTTCATTCATGACTCATGGAACTTCAAAAGCTTGCGAACCCTAAG TCTGGATGGTGCTGATATCAGGGAGTTGCAGGGTTCGATCGGCAAGTTAAAACATCTGAGATATCTTGATGTATCGCGGACTCATATCACGGCATTACCC GATTCCATCACTAATCTCTACAACTTACAAACTTTAAGACTTGTTGAGTGCAGATCACTTCAAGCACTTCCTAGAAGAATGAGAGATTTAGTCAATCTGA GACATATCCATGTTACTTTTCATCACCAGATGCCAGCTGATGTGGGATGCTTCTCTTTCCTTCAAACATTGCCATTCTTTATTGTGTGTCAAGATAGGGG CCAAAAAGTTCAAGAGCTGGAGTCCTTAAATGAACTAAGTGGGAGATTGTCAATATACAATCTGGAGCAGGTGAGAGACAGAGATGAGGCTGCCAAAGCA AACTTGCGTGAAAAAAAGGGAATATGCATGATGGAATTTGTATGGAGTCCAGAAAGAGAGAATTTTGACAATGATGATGACGTGATTGAAGGTCTGCTTC CTCACCAAAACATCAAAAGCCTGAAGATTGAGAATTATGGGGGTAAAAAATTCCCATCATGGCTGCTGCTGAGAACTCCCGGTACTGGTGATTCTTTTCC ACTAAAAAATTTGGTGAATCTGAAATTGTTACACTGCAAGAGAACAGAAGAATTGCCAACGCTTGGACTTCTTCGTCGCCTTAAAGTTCTGGAGATTATT GGAATGAATACCATACGATGTATAGGCATGGAGTTTTACATAAATGAGGGAGAAAGCAGGAGGGAAACAATGCCACTGTTTCCGGCATTAAAAAAGTTAT CTCTACAGTGTATGGAGAATCTAGTTGAATGGAGAGCACCGGCATTAGGTGGAGGAAGTGACATGATTGTATTTCCTTACCTTGAAGAGTTGTCCATTAT GCGTTGTCCGCGATTGAACAGCATTCCAATAAGCCATCTTTCATCACTTGCACAACTTGAGATCTGCTTTTGCGGTGAGTTGAGTTATTTATCTGACGAC TTCCATTCATTCACATCTCTTGAAAATTTAAGAATAGAAGTTTGTCCCAATCTGGAGGCCATTCCAAGTTTGAAGAATCTGAAGTCCCTTAAAAGATTAG CCATTCAACGATGTCAGAAATTAACTGCTCTTCCATCTGGGCTGCAATCCTGCACATCATTGGAGCATTTATGTATACGATGGTGCGTAGAGCTAACCTC AATTCCTGATGAATTGCGAGAGTTGCGCTCCCTACTTCATTTAGAAGTCACAAAATGTCCAAGCTTGAACTACTTTCCCGAGGATAGCTTATGCTGCCTC ACCAGATTGAAGCAGTTGACGGTTGGTCCTTTCTCTGAGAAGTTGAAGACTTTCCCTGGTCTGAATTCAATCCAACATCTCTCGTCCCTTGAAGAGGTAG TAATATCTGGTTGGGATAAACTCACGTCCTTACCAGATCAACTTCAATACATCACTTCCCTGAAATCTCTGTATATACGGCGTTTCAACGGAATGAAAGC TTTGCCAGAATGGTTAGGCAGCCTCAAATGTCTCCAGCAGCTTGGGATTTGGAGATGCAAGAATCTGAGCTATCTACCTACAACCATGCAACAACTCTTT CTAGCAGAGAGGCTAGAGGTCATTGACTGTCCCCTTCTAAAGGAAAATGGCGCCAAGGGGGGTGGTTCCGAGTGA
AA sequence Show only first row Show all	>Potri.019G036850.1 pacid=42774506 polypeptide=Potri.019G036850.1.p locus=Potri.019G036850 ID=Potri.019G036850.1.v4.1 annot-version=v4.1 MAEILLSALSVEFVYGFLDPFSALNLSEALEIKGQLERLRESSILVQAMLQDIEERQLTEESLKHCLDLKDKVFDAEDVIDEFVYEALQRKVEIRSLRKK VRRFFSLSNPILFLLQLKRKLMRNNRSLDKLKNEAAGFGLRVASFSTILENIPNQETDSFFDHPELIKGREADVSKVINLLTSSSNQQDLSVIPIVGMAG IGKTTLAKLVFDAVDDGEFFDETLWVSVSDDFDHQNILGSVLVALSRNMGRVENIDVMVDRLQQELEGKKFLLVLDDVLNENYEKWDRLRNFFLGISGIN GSAIIVTTHSRRVASIMETSPGCRYELKPLSCDESWSIISEAVSGNGGGPITSDLEAIGKEIAEKCEGLPLAARAFGRMMRLRFGIEEWSLLRNLHAWDA LVNQILLPIKLNYDCLPLTVRRCLVYCSIFPKGTKIGKEQLIELWMAEGFLGTSNERMEDRGNQCFSYLIDNYFLVDVERDELENIRSCKMNNIVHDLAS YLSKYEVKNSEAYPGVDDLSHIRYANLSCDTENAQEFFKTGGRKLRSLFSRDFIHDSWNFKSLRTLSLDGADIRELQGSIGKLKHLRYLDVSRTHITALP DSITNLYNLQTLRLVECRSLQALPRRMRDLVNLRHIHVTFHHQMPADVGCFSFLQTLPFFIVCQDRGQKVQELESLNELSGRLSIYNLEQVRDRDEAAKA NLREKKGICMMEFVWSPERENFDNDDDVIEGLLPHQNIKSLKIENYGGKKFPSWLLLRTPGTGDSFPLKNLVNLKLLHCKRTEELPTLGLLRRLKVLEII GMNTIRCIGMEFYINEGESRRETMPLFPALKKLSLQCMENLVEWRAPALGGGSDMIVFPYLEELSIMRCPRLNSIPISHLSSLAQLEICFCGELSYLSDD FHSFTSLENLRIEVCPNLEAIPSLKNLKSLKRLAIQRCQKLTALPSGLQSCTSLEHLCIRWCVELTSIPDELRELRSLLHLEVTKCPSLNYFPEDSLCCL TRLKQLTVGPFSEKLKTFPGLNSIQHLSSLEEVVISGWDKLTSLPDQLQYITSLKSLYIRRFNGMKALPEWLGSLKCLQQLGIWRCKNLSYLPTTMQQLF LAERLEVIDCPLLKENGAKGGGSE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.019G036850 [exp]	0	1
AT5G35370			S-locus lectin protein kinase ...		Potri.002G086500 [exp]	1.00	0.9304
AT4G20325			unknown protein		Potri.006G280600 [exp]	2.44	0.9292
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	3.46	0.9080
AT2G37650	GRAS	SCL9	GRAS family transcription fact...		Potri.008G057400 [exp]	5.19	0.8829
AT5G60410		ATSIZ1, SIZ1	DNA-binding protein with MIZ/S...		Potri.008G042300 [exp]	6.48	0.8892
AT5G49840			ATP-dependent Clp protease (.1...		Potri.004G229400 [exp]	6.63	0.9054
AT5G04940		SUVH1	SU(VAR)3-9 homolog 1 (.1), SU(...		Potri.019G087900 [exp]	6.92	0.8779	SDG907,SUVH3.1
AT5G01720			RNI-like superfamily protein (...		Potri.006G105400 [exp]	7.21	0.8764
AT1G73100		SDG19, SUVH3	SET DOMAIN PROTEIN 19, SU(VAR)...		Potri.001G036800 [exp]	7.93	0.8884	SUVH3.4,SDG950
AT4G35270		NLP2	Plant regulator RWP-RK family ...		Potri.009G166932 [exp]	8.77	0.8795

Compare expression of checked genes

Potri.019G036850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.