Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45500 204 / 6e-56 RNI-like superfamily protein (.1.2) AT5G45520 195 / 7e-52 Leucine-rich repeat (LRR) family protein (.1) AT3G50950 131 / 3e-31 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT3G25510 69 / 1e-11 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT2G14080 68 / 2e-11 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G47250 67 / 3e-11 LRR and NB-ARC domains-containing disease resistance protein (.1) AT1G12210 66 / 8e-11 RFL1 RPS5-like 1 (.1) AT3G46710 66 / 1e-10 NB-ARC domain-containing disease resistance protein (.1) AT1G59124 65 / 2e-10 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58807 65 / 2e-10 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G040700 [exp] 293 / 1e-87 AT5G45500 309 / 7e-93 RNI-like superfamily protein (.1.2) Potri.005G119800 [exp] 136 / 6e-33 AT3G50950 1005 / 0.0 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.016G092600 [exp] 122 / 2e-28 AT3G50950 483 / 4e-158 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.006G014400 [exp] 120 / 9e-28 AT3G50950 435 / 1e-139 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.004G196100 [exp] 101 / 9e-22 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G138100 [exp] 99 / 4e-21 AT3G14470 397 / 4e-121 NB-ARC domain-containing disease resistance protein (.1) Potri.011G129800 [exp] 98 / 6e-21 AT3G50950 493 / 7e-163 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) Potri.004G170232 [exp] 98 / 1e-20 AT3G14470 367 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Potri.017G127200 [exp] 96 / 3e-20 AT3G14470 404 / 4e-123 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022792 [exp] 89 / 6e-18 AT3G14470 343 / 7e-102 NB-ARC domain-containing disease resistance protein (.1) Lus10038983 [exp] 89 / 1e-17 AT3G07040 468 / 5e-150 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10005321 [exp] 89 / 1e-17 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 88 / 1e-17 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 87 / 4e-17 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10027281 [exp] 86 / 7e-17 AT3G07040 459 / 5e-147 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) Lus10042117 [exp] 83 / 5e-16 AT3G14470 354 / 2e-105 NB-ARC domain-containing disease resistance protein (.1) Lus10026109 [exp] 82 / 1e-15 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 81 / 3e-15 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10028279 [exp] 79 / 1e-14 AT3G14470 337 / 5e-99 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.019G036900.1 pacid=42773302 polypeptide=Potri.019G036900.1.p locus=Potri.019G036900 ID=Potri.019G036900.1.v4.1 annot-version=v4.1 ATGTCGATCAAAAGAGATCCAGAGAAAGTTGTGTCAACATTAAAGAATCGTCTGTATCAAGCAATTGATCTGACAACAGGGGGGATTGACGAGAGAATGA AAGAAAATGAACTGGTGTTAAAATTTCGAAGCGCTGAGACCAAGTTTGAGGAATTGAAAAATCTTCTCTCTCGCCACAAGCGCTGGGAAGACACAGTTGT TAGAAAGTTCAACGTGCTGCGACTCAAGATTTACAAAACTCTCTCACTTGCCAAGAACCAAGCTGATGGCGCCAGACAAAATGCCAATACCATCAAAGAT CATCTACATTGGGTTGACAGGAAACTTGACAAGCTAAATCGTCGGTTGAAAGATTCAGAATCATCATATTCAGAATCATCAGATTCAGAATCACGTGTGA AGATAAATCCATATAAGGAAGCTCTGGAAAGAAAGGTGTTGAAAGAGTGGAAAGAGCAAGAAGTGGAAAGGATTATCTTGGAAAGCTCAGCCATGCTCAA TCTTCAGGCAAGTTACCACAATCTGGAGAGGCTAGATTTGAAACTCTGCTTTCTCTTTTTATCTGTTTTTCCAGAGGAAGCTGTGATAAAAAAGAGGCCA TTGATCTATTGGTGGATGGGCGAGGGTTTGATCACTGCCAACGAAAAAAAGACAGCTGAGGAGGAAGGAGAAAGTGTATTTCAGGAGCTAATAGAGCTAG ACCTCATATTACCGTACCATGAAAGACCAGATAAACCAAGCCCAGTTGTCAACGCATGCACAATGCATCCTTGGATTCGTCACATGGCAATCAGTTTAGC CCAGAAGGCCGACCTCTTCGGCTTCGATTCCTCGGGAACACCATCTTATGTTAACGACCGATCTCGACGTGCGTGCTTGGTTTTGAGCAGCGACACTAGT GGCAGTACTCCAAATGAAGAGAATTTGCTAACTGTGTTCAATGTGAGCAAGCGATATCTTAATTTCAGTTTTGACTGGCTACTGAAGTTGAGGAAGGTTG CAGTGCTTCAGCTTGGGCGGTGGCATTACGTACCTGTGCTTCAAATTAAAGTTGAAAACGAGAAGCTTGGGCTGTGGCATCACTCACCTGTGCATCACAT TGAAGTTGAAAATGAGGTGTTTTTGAAAGGTCTGTGGGCTCAGAAGCACTTGAAATATCTTTGCCTCCGAGGAATATCTCTGATAACCACACTTCCTTCA TCAATTGGCGAGCTTTTTAGCCTTGAAATTCTTGATCTCAAAGCGTGCCACAATCTAGAAGAATTGCCTTCTGAGATCGGATCATTGACAAGCCTCACCC ATCTTGATGTATCTGACTGTCCCTTCCTAGAAAGCATGCCAAAGGAGCTTCAGAAGCTCACTCGTCTTCAAGTGCTCAAGGGTTTTGTGATTGGGAACTC GAAAAGAACTCCGTGCAAGATAGCTGATCTTGCTGATATGAAGGAACTAAAGCGGCTTAGCATATATATAGGGAATGAGGCAGTAGTCAAAGAGGGGGAG TTAGCGAAGTTGAAGGCCATTGAAAAACTTCGCTGCCTGACAATGTGGTGGGGAGTAAAAGTATCTCTGAAGACATCCGAAGGCAAAGCTGAAGAAAAAT CTCCGAAATTAACTGCCTTGACAGACTTGTCATTTCCCCCAGGGTTAGAGAAGTTGGATCTGAGAGGCATTCCTCAGGAAAATCCACTAAAAGAACTGAA ACCTGGTTCACTGAACCAGTTAAAAAAGCTCTACATAAGAGGGGGGAAACTTCAGAAGTTGAATCACGGAGAAAAGGATGATCACGTGTGGGAAGTAAAG ATATTGCGTCTCAGGTATCTCAAGGATTTCAAGATAGACAAGAAAAGTTTGAAGCAAGCATTCCCTAAGCTAGATTACTTGGATGTCATATGTGATCAGA GTGGGGATCAGAAAACGAAGTATAAAGAAGATTTTGTGCTAAGGAACAGAAATGAAATTGGAGAGTACTTCAAGGAGAAAGGGAATTCGGAAGAGGAACA GAAGAATGCCATGCCAGCAGAAAATGAAATTTGCAAGGAGGGAAAATCTGCGGAAAGTGTATTGATTAATAAAGGCAAGGGGAAGGAAATAATGTCCGGA AGTGCGATTGAAGAAGCCAGTTCCAGCCGTGATCATCATCATTCGCAGTAG
AA sequence Show only first row Show all	>Potri.019G036900.1 pacid=42773302 polypeptide=Potri.019G036900.1.p locus=Potri.019G036900 ID=Potri.019G036900.1.v4.1 annot-version=v4.1 MSIKRDPEKVVSTLKNRLYQAIDLTTGGIDERMKENELVLKFRSAETKFEELKNLLSRHKRWEDTVVRKFNVLRLKIYKTLSLAKNQADGARQNANTIKD HLHWVDRKLDKLNRRLKDSESSYSESSDSESRVKINPYKEALERKVLKEWKEQEVERIILESSAMLNLQASYHNLERLDLKLCFLFLSVFPEEAVIKKRP LIYWWMGEGLITANEKKTAEEEGESVFQELIELDLILPYHERPDKPSPVVNACTMHPWIRHMAISLAQKADLFGFDSSGTPSYVNDRSRRACLVLSSDTS GSTPNEENLLTVFNVSKRYLNFSFDWLLKLRKVAVLQLGRWHYVPVLQIKVENEKLGLWHHSPVHHIEVENEVFLKGLWAQKHLKYLCLRGISLITTLPS SIGELFSLEILDLKACHNLEELPSEIGSLTSLTHLDVSDCPFLESMPKELQKLTRLQVLKGFVIGNSKRTPCKIADLADMKELKRLSIYIGNEAVVKEGE LAKLKAIEKLRCLTMWWGVKVSLKTSEGKAEEKSPKLTALTDLSFPPGLEKLDLRGIPQENPLKELKPGSLNQLKKLYIRGGKLQKLNHGEKDDHVWEVK ILRLRYLKDFKIDKKSLKQAFPKLDYLDVICDQSGDQKTKYKEDFVLRNRNEIGEYFKEKGNSEEEQKNAMPAENEICKEGKSAESVLINKGKGKEIMSG SAIEEASSSRDHHHSQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45500			RNI-like superfamily protein (...		Potri.019G036900 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121876 [exp]	3.46	0.8215
AT5G61450			P-loop containing nucleoside t...		Potri.001G125700 [exp]	9.16	0.7883
AT3G14470			NB-ARC domain-containing disea...		Potri.017G136266 [exp]	11.83	0.7310
AT5G35750		AHK2	histidine kinase 2 (.1)		Potri.014G164700 [exp]	12.00	0.7480
AT3G15430			Regulator of chromosome conden...		Potri.011G121900 [exp]	14.07	0.7919
AT3G14470			NB-ARC domain-containing disea...		Potri.012G121851 [exp]	15.00	0.7851
AT3G14470			NB-ARC domain-containing disea...		Potri.003G025904 [exp]	16.43	0.7935
AT4G38380			MATE efflux family protein (.1...		Potri.004G183600 [exp]	16.67	0.6602
AT2G37030			SAUR-like auxin-responsive pro...		Potri.006G126500 [exp]	19.59	0.6874
AT5G49610			F-box family protein (.1)		Potri.011G004800 [exp]	28.14	0.6699

Compare expression of checked genes

Potri.019G036900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.