Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G03720 798 / 0 CAT4 cationic amino acid transporter 4 (.1.2) AT1G58030 793 / 0 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 756 / 0 CAT3 cationic amino acid transporter 3 (.1) AT1G05940 228 / 1e-66 CAT9 cationic amino acid transporter 9 (.1) AT3G10600 228 / 2e-66 CAT7 cationic amino acid transporter 7 (.1) AT5G04770 224 / 4e-65 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT4G21120 211 / 7e-60 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 197 / 4e-55 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 172 / 3e-46 CAT8 cationic amino acid transporter 8 (.1) AT3G04184 52 / 1e-08 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065000 [exp] 830 / 0 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039700 [exp] 830 / 0 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1) Potri.002G137000 [exp] 227 / 3e-66 AT1G05940 627 / 0.0 cationic amino acid transporter 9 (.1) Potri.008G017100 [exp] 222 / 5e-64 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.010G241000 [exp] 218 / 8e-63 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.015G133100 [exp] 214 / 3e-61 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 213 / 1e-60 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 208 / 8e-59 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 208 / 8e-59 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005687 [exp] 838 / 0 AT3G03720 803 / 0.0 cationic amino acid transporter 4 (.1.2) Lus10020305 [exp] 834 / 0 AT1G58030 805 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 807 / 0 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 806 / 0 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10001334 [exp] 791 / 0 AT1G58030 973 / 0.0 cationic amino acid transporter 2 (.1) Lus10020320 [exp] 790 / 0 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10013638 [exp] 788 / 0 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1) Lus10042898 [exp] 227 / 4e-66 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10028195 [exp] 225 / 2e-65 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10023271 [exp] 213 / 1e-60 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF13520 [poplar] [flax] AA_permease_2 Amino acid permease CL0062 [poplar] [flax] APC PF13906 [poplar] [flax] AA_permease_C C-terminus of AA_permease
Representative CDS sequence Show only first row Show all	>Potri.019G039600.1 pacid=42774599 polypeptide=Potri.019G039600.1.p locus=Potri.019G039600 ID=Potri.019G039600.1.v4.1 annot-version=v4.1 ATGGGTGTGGCTGACATGCAAAGCAACGGGAATGGGAATGAGGGATTCAGCTTCAGGAGCTGTGTTTTTAGGAGAAAACAAGTGGATTCTCATCGTGTCA GCAGCCATAGCGGTGGCCAAACCCAACAATTAGCTAAGATTCTCTCTGTTGTTGACATCATTGCCATTGGAGTAGGAGCAACGATTGGAGCTGGAGTATA TATTCTTGTAGGAACGGTTGCTAGAGAGCAGACAGGACCGGCTCTTACTGTTTCTTTCTTCATTGCTGGAATTGCTGCTGCTCTCTCAGCATTTTGTTAT GCTGAACTTGTTTGCCGGTGCCCATCAGCGGGGAGTGCCTACCATTACACATACATTTGCATAGGAGAAGGTGCAGCATGGTTGGTTGGCTGGGCATTGA TTCTTGAATATACAATTGGTGGTTCAGCTATTGCTCGTGGCCTAACCCCAAATCTGGCCTTATTTTTTGGAGGTCAAGATAACCTGCCTTCTTACTTGGC CCGCCACTCCATTCCTGGGCTTGGCATTGTGGTAGACCCATGTGCAGCAGTTTTGATTCTTGTTGTCACTTTGCTCTTGTGCATTGGAATCAAGGAGAGT TCATTTGCACAGACTGTTGTTACAACAGTGAATGTTTTTGGGCTGCTTTTCATCATAATAGTTGGTGGATATTTAGCTTTCAAGACTGAATGGATTGGAT ATGAACTTCCTAGTGGGTATTTTCCGTTTGGAGTAAATGGGATGCTTGCAGGATCTGCCGTGGTGTTCTTTTCATTCATTGGTTTTGATGTTGTTGCTAG CACTGCTGAGGAGGTGAAAAATCCTCAACGTGATCTGCCCTTAGGTATAGGCGTTGCTTTGTCTATATGTTGCATTCTATACATGCTTGTCTCTGTTGTT ATTGTTGGCTTAGTGCCATACTACGCATTGGATCCAGACACCCCGATCTCTTCAGCATTTGCTTCCCATGGGATGCAATGGGCAGTGTACATAATAACAA CTGGAGCAGTTACTGCTCTTTGTGCTAGTTTAATGGGTTCACTTCTTCCTCAGCCTCGAATGTTCATGGCAATGGCTAGAGATGGATTGTTGCCATCTTT TTTTTCAGACATTAGTGAACGCACACAAGTTCCAGTGAAGAGCACAGTAATAATTGGTATTCTTGCTGCAGCCCTGGCTTTTGTTATGGATGTTTCACAG TTGGCAGGAATGGTTAGCGTGGGTACACTTCTTGCTTTCACTTCTGTTGCAGTTTCAGTGCTAATACTCAGATATGTTCCACCGAATGAGGTGCCACTTC ATCCATCACTTCAGCAGCTGATTGATTCACCATCACTGCAGTTCAATAGTGATTCTCAGGACATTGCATATCAAAACCCTAAGGGTTCTCTCAGCAACTA TGATCTTAGTCAACATTTACTTGACAATATAGGGACTTCAATTGGATGCACACTTCTTCCGAAACACATGGCTCAAGGTGAACAGAATGAACAAAAAAGG CGAAAAATTGCTGCTTGGAATATAGCTCTTGTATGCGTAGGTGTTTTTGTCCTTGCATCTGCAGCTTCTGTTGAAAATATTCCCAGCATTCTTCGCTTCA CATTGTGTACAGTGGGTGGAGCTATTTTTTTGTGCAGTTTGATTGTTCTTGCTTGCTTAGCACAAGACAATGCAAGGCATAGCTTTGGACACTCAGGAGG TTTTGTTTGTCCTTTTGTTCCATTCTTACCAGTTGCTTGCATTCTTGTCAACACATACTTGTTAGTTAATTTGGGGGCTGGCACATGGTTCCGTGTTTCC ATATGGCTGCTAATAGGGGCACTAGTTTATTTATTTTATGGTCGGACCCACAGCTCATTGAAGAATGCAGTTTATGTTCCTACTGCCCATGCTGAAGAGA TCTACCGCACCTCTTCAGATCTTCTGGCGTAG
AA sequence Show only first row Show all	>Potri.019G039600.1 pacid=42774599 polypeptide=Potri.019G039600.1.p locus=Potri.019G039600 ID=Potri.019G039600.1.v4.1 annot-version=v4.1 MGVADMQSNGNGNEGFSFRSCVFRRKQVDSHRVSSHSGGQTQQLAKILSVVDIIAIGVGATIGAGVYILVGTVAREQTGPALTVSFFIAGIAAALSAFCY AELVCRCPSAGSAYHYTYICIGEGAAWLVGWALILEYTIGGSAIARGLTPNLALFFGGQDNLPSYLARHSIPGLGIVVDPCAAVLILVVTLLLCIGIKES SFAQTVVTTVNVFGLLFIIIVGGYLAFKTEWIGYELPSGYFPFGVNGMLAGSAVVFFSFIGFDVVASTAEEVKNPQRDLPLGIGVALSICCILYMLVSVV IVGLVPYYALDPDTPISSAFASHGMQWAVYIITTGAVTALCASLMGSLLPQPRMFMAMARDGLLPSFFSDISERTQVPVKSTVIIGILAAALAFVMDVSQ LAGMVSVGTLLAFTSVAVSVLILRYVPPNEVPLHPSLQQLIDSPSLQFNSDSQDIAYQNPKGSLSNYDLSQHLLDNIGTSIGCTLLPKHMAQGEQNEQKR RKIAAWNIALVCVGVFVLASAASVENIPSILRFTLCTVGGAIFLCSLIVLACLAQDNARHSFGHSGGFVCPFVPFLPVACILVNTYLLVNLGAGTWFRVS IWLLIGALVYLFYGRTHSSLKNAVYVPTAHAEEIYRTSSDLLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G03720		CAT4	cationic amino acid transporte...		Potri.019G039600 [exp]	0	1
AT3G53310	B3	REM20	AP2/B3-like transcriptional fa...		Potri.004G219800 [exp]	4.58	0.8598
AT5G05340			Peroxidase superfamily protein...		Potri.013G156500 [exp]	7.74	0.8298	Pt-PRX1.15
AT3G22200		HER1, GABA-T, P...	POLLEN-PISTIL INCOMPATIBILITY ...		Potri.016G018500 [exp]	8.77	0.7098
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.004G219700 [exp]	9.27	0.8505
AT1G23800		ALDH2B7	aldehyde dehydrogenase 2B7 (.1...		Potri.002G189900 [exp]	11.31	0.6826	ALDH2.1
AT1G13080		CYP71B2	"cytochrome P450, family 71, s...		Potri.015G086000 [exp]	12.68	0.8177
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G134200 [exp]	13.41	0.8285
AT1G69500		CYP704B1	"cytochrome P450, family 704, ...		Potri.008G088900 [exp]	30.00	0.7695	CYP704B3
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Potri.011G072100 [exp]	30.98	0.7082
					Potri.018G014550 [exp]	33.54	0.7359

Compare expression of checked genes

Potri.019G039600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.