Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CAT3.3,PtrCAT3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58030 924 / 0 CAT2 cationic amino acid transporter 2 (.1) AT5G36940 875 / 0 CAT3 cationic amino acid transporter 3 (.1) AT3G03720 776 / 0 CAT4 cationic amino acid transporter 4 (.1.2) AT1G05940 243 / 3e-72 CAT9 cationic amino acid transporter 9 (.1) AT4G21120 242 / 2e-71 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT5G04770 237 / 9e-70 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT2G34960 226 / 6e-66 CAT5 cationic amino acid transporter 5 (.1) AT3G10600 218 / 8e-63 CAT7 cationic amino acid transporter 7 (.1) AT1G17120 185 / 1e-50 CAT8 cationic amino acid transporter 8 (.1) AT3G04184 45 / 2e-06 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G065000 [exp] 1098 / 0 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 850 / 0 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.015G133100 [exp] 251 / 1e-74 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 248 / 1e-73 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 234 / 3e-68 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 234 / 3e-68 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G083700 [exp] 229 / 6e-67 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.003G154600 [exp] 226 / 1e-65 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.002G137000 [exp] 224 / 6e-65 AT1G05940 627 / 0.0 cationic amino acid transporter 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005671 [exp] 1001 / 0 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020322 [exp] 980 / 0 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10020320 [exp] 959 / 0 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10001334 [exp] 951 / 0 AT1G58030 973 / 0.0 cationic amino acid transporter 2 (.1) Lus10013638 [exp] 946 / 0 AT1G58030 964 / 0.0 cationic amino acid transporter 2 (.1) Lus10005687 [exp] 787 / 0 AT3G03720 803 / 0.0 cationic amino acid transporter 4 (.1.2) Lus10020305 [exp] 781 / 0 AT1G58030 805 / 0.0 cationic amino acid transporter 2 (.1) Lus10001581 [exp] 249 / 3e-72 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10023271 [exp] 243 / 6e-72 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10042898 [exp] 237 / 8e-70 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF13520 [poplar] [flax] AA_permease_2 Amino acid permease CL0062 [poplar] [flax] APC PF13906 [poplar] [flax] AA_permease_C C-terminus of AA_permease
Representative CDS sequence Show only first row Show all	>Potri.019G039700.1 pacid=42774597 polypeptide=Potri.019G039700.1.p locus=Potri.019G039700 ID=Potri.019G039700.1.v4.1 annot-version=v4.1 ATGGGTTTTCTTGTTGATTCACATAAAGGTGGTTGTGGAGTAGGGGGTGGTGGTTGTTTTAGGAGTTTGATAAGGAGAAAACAGGTTGATTCTGTTCATT CTAAAGGACATGGTCATCATCGATTAGCCAAGGAATTGTCTATTCTTCACCTTATTGCTATTGGCGTTGGCTCAACCATTGGAGCTGGAGTTTATATTCT TGTTGGAACAGTTGCTAGAGAGCATTCTGGACCAGCTCTATTTCTATCCTTTTTGGTTGCTGGAATTGCTGCTGCTCTTTCAGCCTTTTGCTACGCAGAA CTTGCAAGTCGTTGTCCATCTGCCGGCAGTGCGTATCATTATTCCTATATATGTGTTGGAGAAGGTGTTGCTTGGTTGATTGGCTGGGCTCTAATATTGG AATACACAATCGGTGGTTCAGCAGTTGCTCGTGGCATATCCCCAAATCTAGCACTGTTCTTTGGAGGTCAGGACAATCTACCAACATTTCTAGCTCGTCA GCACATACCTGGGCTTGATGTTGTGGTTGACCCATGTGCTGCTGTTCTGGTATTGGTTGTCACTGGGCTGTTGTGTGTGGGAATAAAGGAGAGTACTTTA GCACAAGCCATAGTAACCTCCATAAATGTGTGTGCCATGCTTTTCATCATAATAGCTGGTACTTATCTCGGCTTCAAGACTGGATGGGCTGGATATGAAC TTCCTACTGGGTACTTTCCCTTTGGGGTGGATGGGATGCTTGCAGGGTCTGCAACTGTATTTTTTGCGTACATTGGTTTTGATTCAGTTGCCAGCACTGC TGAGGAGGTGAAAAATCCACAACGAGATTTACCTCTAGGCATTGGGCTCTCGCTGTCTATTTGTTGTTCTTTGTACATGCTGGTCTCTGTTGTCATTGTT GGTCTGGTACCTTATTATGCAATGGATCCCGATACCCCTATCTCATCAGCTTTTTCTGTACACGGGATGCAATGGGCAGCGTACTTGATAACTGCTGGGG CAGTTATGGCTCTCTGCTCAACATTGATGGGGTCAATGCTTCCTCAGCCTCGAATTTTGATGGCAATGGCCAGAGATGGATTGCTGCCATCATTCTTTTC AGATGTAAATAGAAGCACCCAAGTTCCTGTTAAGAGCACGTTGGTGACTGGCTTTGGTGCTGCAGTATTGTCATTTTTTATGGATGTTTCACAGTTAGCT GGGATGGTCAGTGTGGGCACACTTCTTGCTTTCACTATGGTAGCAATTTCTGTATTGATACTGAGATACGTACCACCAGATGAGGTGCCTTTTCCATCTT CACTTCAGGAGACTATCGATTCTGTGTCATTACGGTACAGTAGTCAAGATGTCTATGAGGAAAAGGCTGCTATTCATGCGGGTACCTCTAAGGATAGCAA ATTGCCTTTACTAGGCAAAGCAAAAACAATTGAATATCCTTTACTTGTAAAACAAGAAGCTCAAAGCAATTTTGTCCTGAATGAAGGGAAAAGGCGAGAA ATTGCTGGCTGGACCATAGCAGCCACATGCATTGGGGCGGTTCTCCTTACCTATGCAGCTTCAGACTTGAGTCTTCCTAGTCCTCTTCGTTTTACAACGT GTGGAGTTGGTGGTGCACTTCTCCTTTCTGGTCTGATTGTGCTGACCTGCATAGAACAAGATGATGCAAGGCACAGCTTTGGGCATTCAGGAGGTTTCAT TTGTCCATTTGTTCCACTACTTCCCATTGTCTGCATACTCGTCAACATCTACCTGCTGATTAATCTTGGTGCTGCCACTTGGACCCGTGTTTCTGTATGG CTTATTGTTGGAGTGCTTGTTTATGTATTCTATGGACGGAAACACAGCTCACTACGGGATGCTGTCTATGTACCTGCAACTCATGCTGATGAAATTTATC GGAGCTCTGGAGAAAGTTTGGCATAG
AA sequence Show only first row Show all	>Potri.019G039700.1 pacid=42774597 polypeptide=Potri.019G039700.1.p locus=Potri.019G039700 ID=Potri.019G039700.1.v4.1 annot-version=v4.1 MGFLVDSHKGGCGVGGGGCFRSLIRRKQVDSVHSKGHGHHRLAKELSILHLIAIGVGSTIGAGVYILVGTVAREHSGPALFLSFLVAGIAAALSAFCYAE LASRCPSAGSAYHYSYICVGEGVAWLIGWALILEYTIGGSAVARGISPNLALFFGGQDNLPTFLARQHIPGLDVVVDPCAAVLVLVVTGLLCVGIKESTL AQAIVTSINVCAMLFIIIAGTYLGFKTGWAGYELPTGYFPFGVDGMLAGSATVFFAYIGFDSVASTAEEVKNPQRDLPLGIGLSLSICCSLYMLVSVVIV GLVPYYAMDPDTPISSAFSVHGMQWAAYLITAGAVMALCSTLMGSMLPQPRILMAMARDGLLPSFFSDVNRSTQVPVKSTLVTGFGAAVLSFFMDVSQLA GMVSVGTLLAFTMVAISVLILRYVPPDEVPFPSSLQETIDSVSLRYSSQDVYEEKAAIHAGTSKDSKLPLLGKAKTIEYPLLVKQEAQSNFVLNEGKRRE IAGWTIAATCIGAVLLTYAASDLSLPSPLRFTTCGVGGALLLSGLIVLTCIEQDDARHSFGHSGGFICPFVPLLPIVCILVNIYLLINLGAATWTRVSVW LIVGVLVYVFYGRKHSSLRDAVYVPATHADEIYRSSGESLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58030		CAT2	cationic amino acid transporte...		Potri.019G039700 [exp]	0	1	Pt-CAT3.3,PtrCAT3
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187500 [exp]	1.73	0.8034
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	6.63	0.7627	STGA1.3
AT1G76900	TUB	AtTLP1	tubby like protein 1 (.1.2)		Potri.002G068200 [exp]	7.74	0.7510
AT1G53910	AP2_ERF	RAP2.12	related to AP2 12 (.1.2.3)		Potri.001G163700 [exp]	8.48	0.7091	Pt-ERF1.3
AT2G18960		OST2, PMA, AHA1	PLASMA MEMBRANE PROTON ATPASE,...		Potri.018G090300 [exp]	13.41	0.7183	Pt-VHA2.2
AT1G68030			RING/FYVE/PHD zinc finger supe...		Potri.016G053300 [exp]	16.43	0.7533
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Potri.009G164300 [exp]	18.70	0.7328
AT2G24130			Leucine-rich receptor-like pro...		Potri.003G184100 [exp]	20.78	0.7323
AT4G25230		RIN2	RPM1 interacting protein 2 (.1...		Potri.003G109400 [exp]	23.91	0.7179
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	27.83	0.7446

Compare expression of checked genes

Potri.019G039700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.