Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26780 211 / 4e-66 MYB LOF1, ATMYB117 LATERAL ORGAN FUSION 1, myb domain protein 117 (.1.2) AT1G69560 213 / 5e-66 MYB LOF2, ATMYB105 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) AT5G17800 207 / 6e-64 MYB ATMYB56 myb domain protein 56 (.1) AT1G73410 185 / 2e-56 MYB AtMYB54, BW54, MYB54 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 54, myb domain protein 54 (.1) AT1G17950 185 / 2e-56 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT3G29020 184 / 3e-56 MYB ATMYB110 myb domain protein 110 (.1.2) AT4G33450 176 / 7e-53 MYB ATMYB69 myb domain protein 69 (.1) AT5G39700 139 / 2e-39 MYB ATMYB89 myb domain protein 89 (.1) AT3G55730 136 / 3e-36 MYB ATMYB109 myb domain protein 109 (.1) AT4G37260 127 / 1e-33 MYB ATMYB73 myb domain protein 73 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067000 [exp] 533 / 0 AT5G17800 189 / 6e-57 myb domain protein 56 (.1) Potri.010G167500 [exp] 225 / 1e-69 AT1G69560 237 / 8e-75 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.008G088000 [exp] 224 / 3e-69 AT1G69560 229 / 2e-71 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.017G085200 [exp] 218 / 7e-67 AT1G69560 215 / 2e-66 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Potri.012G039400 [exp] 194 / 3e-60 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.015G033600 [exp] 194 / 3e-60 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.005G186400 [exp] 191 / 1e-57 AT1G17950 197 / 1e-61 myb domain protein 52 (.1) Potri.007G106100 [exp] 189 / 1e-57 AT4G33450 207 / 2e-66 myb domain protein 69 (.1) Potri.002G073500 [exp] 188 / 1e-56 AT1G17950 202 / 9e-64 myb domain protein 52 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030452 [exp] 225 / 2e-70 AT1G69560 240 / 6e-77 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10026611 [exp] 223 / 2e-69 AT1G69560 238 / 5e-76 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10005683 [exp] 204 / 4e-63 AT5G17800 212 / 1e-66 myb domain protein 56 (.1) Lus10029746 [exp] 190 / 2e-57 AT1G17950 199 / 1e-62 myb domain protein 52 (.1) Lus10028638 [exp] 186 / 5e-56 AT1G17950 206 / 7e-66 myb domain protein 52 (.1) Lus10018936 [exp] 185 / 9e-56 AT1G69560 206 / 6e-65 LATERAL ORGAN FUSION 2, myb domain protein 105 (.1) Lus10031900 [exp] 184 / 1e-54 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10031326 [exp] 183 / 2e-54 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10028250 [exp] 141 / 6e-38 AT3G55730 306 / 2e-101 myb domain protein 109 (.1) Lus10040239 [exp] 140 / 8e-38 AT3G55730 315 / 1e-104 myb domain protein 109 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G040900.1 pacid=42774727 polypeptide=Potri.019G040900.1.p locus=Potri.019G040900 ID=Potri.019G040900.1.v4.1 annot-version=v4.1 ATGAGTCTACAACACCTAATGAGTGACAAATATGTTTTCAACGGGTATCAAGACATGAACTTTTTGCCTTCACCTCCTCCTTCTCATCTTTCTCTCTCTC ATGCATTTGGGGTTATGGGTCAACCAGGAGAGACAGGGACTAGCAATCCTCAAATGGGGTTTCAGATTTTGAGCCATCCAATGGGCCAGGACAGGAAACC ACGGAGCATTCAACAGCTTGAAAGCAGGGGAGCTGATATGAGTGATGTGGACTTCGGCGTTCAAAAAAAGAGCTTGTCTTTGAATCCAGGTGAGGAAGAG GAGCTTAAAACCTCTGCTCTTGGTAGAAATGGGCATACAAAGCTTTGTGCTAGAGGCCATTGGAGACCAGCTGAAGATGCTAAGCTAAAAGAGCTTGTGG CTCAATATGGTCCTCAAAATTGGAACTTGATTGCAGAGAATCTTGAAGGAAGATCAGGTAAGAGCTGTAGATTAAGGTGGTTTAACCAACTGGATCCAGG AATTAACAGGAAGGCATTCACTGAAGAGGAAGAGGAGAGACTTCTAGCTGCTCATAGACTTTATGGCAACAAATGGGCTATGATTTCTAGGCTATTTCCT GGTAGGACTGATAATGCAGTTAAGAACCATTGGCATGTGATCATGGCCAGGAAACATAGAGAAAACTCCAGCGTTTACAGGAGGAGAAAGCCCACTTCTT CCTCTCAAATCCTCCCTAAAGGATCATTAAATGTCACTTTGCAAAACAATGCTTGCAGTGAATCAACAACCATCACTAGCACTATCGAGGAGTCTGGCTC AACATGCACCGATCTCTCTCTCACCCCCTCTTCGACCAAAGTACCTGCTAGACTTTTCACCAGGTTCAGTCCTCAAGGTTCCCAAAGGGGTTTATCGGCA GAGAAGGAAGCGACTGTGGGAAATGTGGATTTCGACGAGTTCTATGGCAGTAGCAATGGGTTTTATCAAAATGGGCCTATGATGGTGGTTACGCGTGTGG ACCAATCTGGTCAGTCGGATTCAAACTCAGAAGATTCTGCAACTGGGTCGGTTGTCACCAACAGGGCCAATCTCTGTGAAAATAGGAATGAGAGAATCAA CATGCCCTTCATAGACTTTCTTGGAGTAGGAGCTACATAA
AA sequence Show only first row Show all	>Potri.019G040900.1 pacid=42774727 polypeptide=Potri.019G040900.1.p locus=Potri.019G040900 ID=Potri.019G040900.1.v4.1 annot-version=v4.1 MSLQHLMSDKYVFNGYQDMNFLPSPPPSHLSLSHAFGVMGQPGETGTSNPQMGFQILSHPMGQDRKPRSIQQLESRGADMSDVDFGVQKKSLSLNPGEEE ELKTSALGRNGHTKLCARGHWRPAEDAKLKELVAQYGPQNWNLIAENLEGRSGKSCRLRWFNQLDPGINRKAFTEEEEERLLAAHRLYGNKWAMISRLFP GRTDNAVKNHWHVIMARKHRENSSVYRRRKPTSSSQILPKGSLNVTLQNNACSESTTITSTIEESGSTCTDLSLTPSSTKVPARLFTRFSPQGSQRGLSA EKEATVGNVDFDEFYGSSNGFYQNGPMMVVTRVDQSGQSDSNSEDSATGSVVTNRANLCENRNERINMPFIDFLGVGAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G26780	MYB	LOF1, ATMYB117	LATERAL ORGAN FUSION 1, myb do...		Potri.019G040900 [exp]	0	1
AT5G27690			Heavy metal transport/detoxifi...		Potri.013G017700 [exp]	1.00	0.8584
AT5G67620			unknown protein		Potri.007G005600 [exp]	6.70	0.7953
					Potri.010G210400 [exp]	8.12	0.7439
AT3G62200			Putative endonuclease or glyco...		Potri.013G003100 [exp]	8.48	0.7512
AT5G54660			HSP20-like chaperones superfam...		Potri.001G416200 [exp]	11.18	0.7137
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188200 [exp]	13.03	0.7314
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Potri.010G154300 [exp]	13.78	0.7280
AT3G09110			Protein of unknown function (D...		Potri.010G210800 [exp]	16.43	0.7289
AT4G29920			Double Clp-N motif-containing ...		Potri.006G073800 [exp]	18.97	0.7797
AT5G14750	MYB	WER1, WER, AtMY...	WEREWOLF 1, WEREWOLF, myb doma...		Potri.003G064600 [exp]	20.39	0.6809

Compare expression of checked genes

Potri.019G040900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.