Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08810 297 / 1e-100 MYB ATMYB60 myb domain protein 60 (.1.2) AT3G47600 244 / 3e-79 MYB ATMYB94, AtMYBCP70 myb domain protein 94 (.1) AT3G28910 244 / 5e-79 MYB AtMYB30, MYB30 myb domain protein 30 (.1) AT5G62470 244 / 9e-79 MYB ATMYB96, mybcov1 myb domain protein 96 (.1.2) AT1G74650 241 / 7e-78 MYB ATMYB31 AtY13 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, myb domain protein 31 (.1) AT5G15310 192 / 6e-59 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT3G23250 188 / 6e-58 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT4G28110 187 / 1e-57 MYB ATMYB41 myb domain protein 41 (.1) AT2G31180 186 / 2e-57 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1) AT3G61250 187 / 3e-57 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G067500 [exp] 485 / 4e-174 AT1G08810 293 / 8e-99 myb domain protein 60 (.1.2) Potri.017G082500 [exp] 275 / 4e-91 AT3G47600 319 / 2e-108 myb domain protein 94 (.1) Potri.004G126700 [exp] 270 / 5e-89 AT3G28910 310 / 2e-104 myb domain protein 30 (.1) Potri.012G140700 [exp] 197 / 2e-61 AT3G61250 276 / 1e-92 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.019G118200 [exp] 196 / 4e-60 AT4G05100 278 / 7e-92 myb domain protein 74 (.1) Potri.013G148600 [exp] 194 / 2e-59 AT4G21440 269 / 4e-88 A. THALIANA MYB 4, MYB-like 102 (.1) Potri.015G143500 [exp] 192 / 2e-59 AT3G61250 278 / 2e-93 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Potri.005G074500 [exp] 193 / 3e-59 AT1G34670 290 / 1e-96 myb domain protein 93 (.1) Potri.017G086300 [exp] 195 / 4e-59 AT5G15310 343 / 6e-117 myb domain protein 16 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009522 [exp] 278 / 1e-92 AT1G08810 284 / 9e-96 myb domain protein 60 (.1.2) Lus10002056 [exp] 251 / 8e-82 AT5G62470 320 / 6e-109 myb domain protein 96 (.1.2) Lus10020343 [exp] 250 / 1e-81 AT1G08810 286 / 1e-96 myb domain protein 60 (.1.2) Lus10024218 [exp] 241 / 2e-78 AT3G47600 305 / 2e-103 myb domain protein 94 (.1) Lus10015369 [exp] 240 / 1e-77 AT3G28910 293 / 2e-98 myb domain protein 30 (.1) Lus10042200 [exp] 241 / 2e-77 AT5G62470 330 / 2e-111 myb domain protein 96 (.1.2) Lus10030677 [exp] 230 / 9e-74 AT3G47600 293 / 1e-98 myb domain protein 94 (.1) Lus10008616 [exp] 232 / 3e-73 AT3G47600 322 / 2e-108 myb domain protein 94 (.1) Lus10005245 [exp] 214 / 2e-67 AT3G47600 289 / 6e-97 myb domain protein 94 (.1) Lus10041145 [exp] 190 / 5e-59 AT3G23250 237 / 3e-78 myb domain protein 15 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.019G045900.1 pacid=42773240 polypeptide=Potri.019G045900.1.p locus=Potri.019G045900 ID=Potri.019G045900.1.v4.1 annot-version=v4.1 ATGGGAAGACCTCCTTGCTGTGACAAAGATGGGATCAAGAAAGGTCCATGGACCCCTGAGGAGGACATCATCCTGGTGTCTTATATTCAAGAACATGGTC CAGGAAATTGGAGATCAGTTCCAACCAACACTGGGTTGTTAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACTAACTACCTCAGACCAGGAATTAAGCG AGGCAACTTCACACCCCATGAAGAAGGGATGATAATTCACTTGCAAGCTATATTGGGTAACAAATGGGCAGCTATAGCTTCATATCTTCCCCAGAGGACA GATAATGATATAAAGAACTACTGGAACACCCACCTGAAGAAGAAACTAAAGAAGTTCCAGTCAGCTTGGGACCCTATGGCACAAGACTCAACAAGCAGTC AGTTTACCTCAAAAAGTTTCAATGATAGAAAGAGCTTAGATAATTTCACCACCAATTCCTCATCAGCCCTCAGGCCTAATCAGGCCTCCACATATGCATC AAGTACCGAAAACATTTCTCGTCTTCTTGAAGGTTGGATGAGATCATCTCCAAAGCCGAATAGTTCGAATTTTCTTCTCAAAGAAAATCGGGAGCAAGAA AATAACAGCCAGGAAAATAATGATCATGACATTGCCAATTCAGTGGCTATAAATTATCTTCAATCTTACAAGGAAAAACCTGAGCAAGAACGTGGTGATC TAATCTCTCATGAAGAGTTTGAGTCCATTTTATCACTCGAGAGCTTGCATAATGTTGCATGGGACAAGTCCTGTTGTGATTCTGGTACTGTTACTACCAC CACTACTACGAAAGGTTTCCATAACTCTGCAAGTGATGAGAAGGAAAATATGACAATGATCGAGAGGAATCAGAAATCTGAGAGTACCCCCCCCTTATCA TTTCTTGAGAAATGGCTCTGGGATGAAAATGGTGCTGGTCAAGTGGAAGAAATTATGGAACTCTCTCCAATATTCTGA
AA sequence Show only first row Show all	>Potri.019G045900.1 pacid=42773240 polypeptide=Potri.019G045900.1.p locus=Potri.019G045900 ID=Potri.019G045900.1.v4.1 annot-version=v4.1 MGRPPCCDKDGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTPHEEGMIIHLQAILGNKWAAIASYLPQRT DNDIKNYWNTHLKKKLKKFQSAWDPMAQDSTSSQFTSKSFNDRKSLDNFTTNSSSALRPNQASTYASSTENISRLLEGWMRSSPKPNSSNFLLKENREQE NNSQENNDHDIANSVAINYLQSYKEKPEQERGDLISHEEFESILSLESLHNVAWDKSCCDSGTVTTTTTTKGFHNSASDEKENMTMIERNQKSESTPPLS FLEKWLWDENGAGQVEEIMELSPIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08810	MYB	ATMYB60	myb domain protein 60 (.1.2)		Potri.019G045900 [exp]	0	1
AT2G43010	bHLH	SRL2, PIF4, AtP...	phytochrome interacting factor...		Potri.005G207200 [exp]	1.00	0.9475
AT1G79160			unknown protein		Potri.007G067300 [exp]	4.00	0.9077
AT4G38620	MYB	AtMYB4	myb domain protein 4 (.1)		Potri.005G112000 [exp]	5.29	0.8895
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Potri.007G008500 [exp]	8.66	0.8977	XTH2.2
					Potri.016G121650 [exp]	9.00	0.9083
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.002G230200 [exp]	13.00	0.8839
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	14.07	0.8860
AT4G00730	HD	AHDP, ANL2	ANTHOCYANINLESS 2, ARABIDOPSIS...		Potri.002G154700 [exp]	14.89	0.8936	Pt-ANL2.1
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	23.55	0.8819
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.010G160200 [exp]	23.66	0.8863

Compare expression of checked genes

Potri.019G045900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.