Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25810 120 / 5e-34 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 116 / 3e-32 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT1G01250 110 / 2e-30 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G32800 108 / 2e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G16750 106 / 4e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G44940 108 / 6e-29 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G60490 107 / 1e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G25470 104 / 8e-28 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT2G35700 102 / 2e-27 AP2_ERF ATERF38 ERF family protein 38 (.1) AT1G71450 102 / 2e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G163400 [exp] 115 / 2e-31 AT4G32800 159 / 6e-48 Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 112 / 7e-31 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.013G101100 [exp] 111 / 7e-31 AT1G71450 184 / 1e-59 Integrase-type DNA-binding superfamily protein (.1) Potri.014G099900 [exp] 110 / 2e-30 AT1G01250 191 / 4e-62 Integrase-type DNA-binding superfamily protein (.1) Potri.012G134100 [exp] 111 / 4e-30 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.003G050700 [exp] 110 / 6e-30 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.018G085700 [exp] 111 / 7e-30 AT4G32800 155 / 4e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 108 / 3e-29 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 107 / 7e-29 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002801 [exp] 116 / 2e-32 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 110 / 4e-31 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 111 / 1e-30 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10031654 [exp] 110 / 2e-30 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10027414 [exp] 108 / 7e-30 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10034949 [exp] 110 / 2e-29 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10038270 [exp] 106 / 1e-28 AT5G11590 168 / 4e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10027412 [exp] 105 / 3e-28 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10043240 [exp] 105 / 1e-27 AT5G11590 176 / 1e-54 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10031657 [exp] 104 / 1e-27 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.019G067400.1 pacid=42773718 polypeptide=Potri.019G067400.1.p locus=Potri.019G067400 ID=Potri.019G067400.1.v4.1 annot-version=v4.1 ATGTCCATAACTCAAGAACCTCCCGGATTGAAAACAAACCCACTTGAGTCCGAACCAACATCAGAAAGGAAATCCAAGAAGAGGACCCGCCAACGTGACG CCCCATTTCATGGTGTGAGAAAACGTAGTTGGGGCCGTTATGTATCTGAAATTCGGTTACCCGGTAAGAAGACCAGAGTATGGCTCGGGTCATTTGGATC ACCGGAGATGGCTGCCCGGGCCCATGACTCGGCCGCTTTCTTTTTAAAAGGCAACTCAGCGTGTCTCAACTTCCCTGACTCAGTCGGGTCACTTCCCCGC CCCAAGTCTTGTTCTAGCAAAGACATCCAATTGGCAGCGGCCAAAGCTGCAACTGGGTTTGACGAAACGAGGGTAGGTAACGTGGTCGGATTTGAGGATT GCGAGTCGGGTGGAGAACCCGATAGTTCAATTTGGTTGGGTTTGGGTGAGATAGAAACGGTGTCGTATGAAGAAGTGAAACGAACTCCTTTATTGAGTCC TTTGCGATTCGATTCAGTGAGTGGAAATGATGAAGTGTTATATATGAACGATGAGGAGCTTTTATTTGCTACATATTTGTAA
AA sequence Show only first row Show all	>Potri.019G067400.1 pacid=42773718 polypeptide=Potri.019G067400.1.p locus=Potri.019G067400 ID=Potri.019G067400.1.v4.1 annot-version=v4.1 MSITQEPPGLKTNPLESEPTSERKSKKRTRQRDAPFHGVRKRSWGRYVSEIRLPGKKTRVWLGSFGSPEMAARAHDSAAFFLKGNSACLNFPDSVGSLPR PKSCSSKDIQLAAAKAATGFDETRVGNVVGFEDCESGGEPDSSIWLGLGEIETVSYEEVKRTPLLSPLRFDSVSGNDEVLYMNDEELLFATYL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.019G067400 [exp]	0	1
AT1G21910	AP2_ERF	DREB26	dehydration response element-b...		Potri.005G176000 [exp]	2.23	0.9024	DREB39
AT1G10020			Protein of unknown function (D...		Potri.005G150100 [exp]	4.24	0.7987
AT1G77640	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G085600 [exp]	4.47	0.8949	DREB41
AT3G53400			unknown protein		Potri.006G128800 [exp]	5.00	0.7909
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156833 [exp]	5.74	0.8200
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G200900 [exp]	5.74	0.8673
AT3G03280			unknown protein		Potri.016G128800 [exp]	6.92	0.8639
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Potri.010G079000 [exp]	6.92	0.7913	CIPK4.2
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098800 [exp]	9.89	0.8448
AT4G14130		XTR7, XTH15	xyloglucan endotransglycosylas...		Potri.005G201200 [exp]	11.31	0.8060	EXT.13

Compare expression of checked genes

Potri.019G067400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.