Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17680 628 / 0 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 570 / 0 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT2G14080 536 / 7e-171 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 518 / 1e-167 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G69550 527 / 8e-166 disease resistance protein (TIR-NBS-LRR class) (.1) AT5G11250 520 / 4e-165 Disease resistance protein (TIR-NBS-LRR class) (.1) AT5G51630 509 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2), Disease resistance protein (TIR-NBS-LRR class) family (.3) AT5G44510 506 / 6e-160 TAO1 target of AVRB operation1 (.1) AT5G22690 498 / 6e-159 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 503 / 1e-158 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G068300 [exp] 1172 / 0 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097100 [exp] 1101 / 0 AT4G12010 521 / 8e-165 Disease resistance protein (TIR-NBS-LRR class) family (.1) Potri.017G010800 [exp] 1089 / 0 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G097800 [exp] 1008 / 0 AT5G17680 512 / 3e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098500 [exp] 962 / 0 AT5G17680 496 / 4e-157 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G098900 [exp] 939 / 0 AT5G17680 477 / 6e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 930 / 0 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070700 [exp] 817 / 0 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 813 / 0 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026201 [exp] 732 / 0 AT5G17680 511 / 1e-160 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10005588 [exp] 730 / 0 AT5G17680 499 / 2e-156 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10029722 [exp] 704 / 0 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030345 [exp] 667 / 0 AT5G17680 528 / 5e-168 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10041060 [exp] 629 / 0 AT5G17680 641 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10016029 [exp] 607 / 0 AT4G12010 451 / 2e-138 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015350 [exp] 589 / 0 AT4G12010 422 / 2e-127 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015648 [exp] 577 / 0 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10030839 [exp] 557 / 9e-179 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10041078 [exp] 535 / 3e-175 AT5G17680 399 / 6e-126 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0022 [poplar] [flax] LRR PF07725 [poplar] [flax] LRR_3 Leucine Rich Repeat CL0022 [poplar] [flax] LRR PF12799 [poplar] [flax] LRR_4 Leucine Rich repeats (2 copies) CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.019G068200.1 pacid=42773806 polypeptide=Potri.019G068200.1.p locus=Potri.019G068200 ID=Potri.019G068200.1.v4.1 annot-version=v4.1 ATGGCTTCGACTTCTTCTTCAACAACCACTCCTCAAGAAAAATACGATGTGTTCCTTAGTTTCAGAGGAGAGGACACTCGTGTTTGTTTTGTCAGCCACC TCTATGCTGCTTTGAAGCGGAAACAAATCTCAACCTTCATCGATTACAAACTTAACAGAGGGGAAGAAATTTCTCCATCCCTTTTGAAAGCAATTGAAGA TTCCAAGCTTTCTGTCGTTGTTTTCTCTGACAACTACGCGTCTTCCAAATGGTGCTTGGAGGAACTTGCAAAAATTCTTGAATGCAAGAAAGTTAAAGGG CAGATGGTTATACCCGTTTTCTATCGGGTTGATCCATCTCATGTTAGGAATCAAACTGGAAGTTTTGCCGATGCATTTGCTAGGCATGACCAGTTATTGA AGGAGAAGATGGAAAAGGTGCTCAACTGGAGAGCGGCCATGAGGGAGGCAGCCAATCTATCTGGGTGGGATTCACATAACATTAAATCCGAGTCTGAATT TGTTGATGACATTGTTAGAGATATATTGAACAAATTGCATCAAACATCTATGAGTACTCATCATACGAGTCTGATTGGAATTGATGCACGTATTAAGAAG GTTGAAACTTTGTTGAAAATGGAGTCCCAAGATGTTCGGATTGTAGGGATATGGGGAATGGGTGGTATAGGTAAGACAACTATTGCTAAAGCGGTATATG ACAATGTCTCTGCTCAATTTGAAGGGTTCCTCTTTGTTGCAAATGTTAGGGAAGAAATAAAAAGACATTCAGTGGTTGGTTTGCAGAAAAATATCCTTCC AGAATTACTAGACCAAGACATTCTGAACACTGGCCCTTTGAGCTTCGGAAATGCTTTTGTAATGGATAGACTTCTCCGTAAAAAGGTTCTTATTGTTCTC GATGATGTGGATAGTTCAAGGCAACTGGAAGAATTGTTACCAGAGCCACATGTTTCATTTGGTCCAGGAAGTAAAATTCTTTTAACAAGTAGGGATAAGC AAGTGCTTACGAATGTGGTCGATGAAATCTATGATGTTGAGAGATTGAACCACCATGAAGCTCTTCAACTCTTTAACATGAAAGCCTTCAAGAATTACAA CCCCACAATTGATCATAGTGAGTTGGTAGAAAAGATAGTAGATTATGCACAAGGCAATCCTTTGGCTCTTATAGTTTTAGGTTCTGCTCTCTATGGTAGA AGCAAAGAGGAATGGTGTAGTGTTTTGAATAAGTTAGGGAAAGTTTCTAGCCGTGAAATTCAGAATGTGTTGAGAATTAGTTATGATGGGCTTGATGATG AACAACAAGAGATATTTCTTGATCTTGCATTCTTTTTCAATGGGGCAAATAGGGACCGTGTTACAAAAATTTTGGATGGTTGTTATTCAGCTGCTTGTTT GGATATAAGTGTTCTTTTTGAAAAGTCTCTCATCACCACACCTGGTTGCACAGTCAACATGCATGATTCACTACGAGAGATGGCTTTTAGCATTGTTCGT GAAGAATCTAAAATTCCAGGCAAACGTAGTAGGTTATGTGATCCTGAGGATGTATATCAAGCATTGGTGAAAAAGAAGGGAACGGAGGCAGTTGAAGGCA TATGCTTGGATATCTCTGAATCACGTGAAATGCACTTAAAATCTGATGCCTTTTCAAGGATGGATCGGCTAAGAATTCTCAAATTTTTTAATCATTTTTC CTTGGATGAAATTTTCATAATGGACAACAAAGATAAAGTGCACCTTCCTCATTCTGGCCTCGATTATCTTTCTGATGAGCTGAGATATCTCCATTGGGAT GGGTTCCCTTTGAAAACCTTGCCACAAAGTTTTTGTGCTGAAAACATTGTTGAGCTTATTTTCCCTGATAGCAAGATTGAAAAGCTTTGGACAGGTGTAC AGGACCTTGTGCATTTAAGACGTATGGATCTCAGTGGCTCCCCATATTTGCTTGAAATCCCTGATCTCTCCATGGCCGAAAATATAGAGAGTATAAATCT TAAATTTTGTAAAAGTTTAATAGAGGTGAACCCCTCTATTCAATATCTCACCAAGCTGGAGGTCCTTCAGCTCAGTTATTGTGACAATCTTAGAAGTCTT CCAAGCAGGATTGGTTCGAAAGTTTTGAGAATTCTTGATCTATATCATTGCATTAATGTCAGAATATGCCCTGCAATTTCAGGAAATTCACCAGTTCTTA GAAAGGTTGATCTACAATTCTGCGCAAATATTACAAAGTTTCCAGAGATTTCTGGGAACATAAAATATCTATATTTGCAAGGGACGGCAATCGAAGAGGT GCCTTCATCAATTGAGTTTCTCACAGCACTTGTTAGATTGTATATGACTAACTGCAAACAGCTCTCAAGTATTCCCAGCAGCATCTGTAAACTGAAATCC CTTGAAGTTCTCGGGCTTTCAGGTTGCTCAAAACTTGAGAACTTCCCAGAAATCATGGAGCCCATGGAATCTTTGAGACGTCTCGAGTTAGATGCAACAG CTATTAAAGAGCTACCTTCATCAATTAAATATCTGAAATTCTTGACACAGCTTAAGCTAGGTGTAACAGCTATTGAAGAGCTATCCTCATCAATTGCACA ACTGAAATCTTTGACACATCTTGATTTAGGCGGAACAGCTATTAAAGAGCTACCCTCTTCAATTGAACATCTGAAATGTTTGAAACATCTGGATTTAAGC GGAACGGGTATCAAAGAGTTACCAGAGCTTCCATCGTCACTTACAGCTCTAGATGTAAATGACTGTAAATCACTTCAAACCTTATCGAGGTTCAATCTAA GAAATTTCCAGGAGTTGAACTTTGCAAACTGCTTCAAATTGGATCAAAAGAAACTAATGGCAGATGTGCAATGTAAAATTCAGTCTGGAGAGATTAAAGG TGAGATTTTTCAAATCGTTTTACCAAAGAGTGAAATTCCACCATGGTTTCGCGGTCAAAATATGGGATCTTCAGTTACCAAAAAGTTGCCCTTAAACTGT CATCAGATCAAGGGAATTGCTTTCTGCATAGTCTTTGCATCTCCCACACCACTTCTGTCTGATTGTGCCAATTTTAGTTGCAAATGCGATGCCAAAAGTG ATAATGGTGAACATGATCATGTCAATTTATTATGGTATGATTTGGATCCACAGCCAAAAGCTGCTGTATTCAAGTTAGATGATTCGGATCACATGTTATT GTGGTATGAGAGCACAAGAACAGGTCTTACTAGTGAATATTCTGGCAGTGAAGTTACATTCGAATTCTACGACAAAATCGAGCATTCCAAGATCAAAAGG TGTGGGGTCTATTTCCTATTTGATAAGAATCGATCCAGCAGTTGTGATGAGGATTCGAGCCACCAGGATGACAACTGA
AA sequence Show only first row Show all	>Potri.019G068200.1 pacid=42773806 polypeptide=Potri.019G068200.1.p locus=Potri.019G068200 ID=Potri.019G068200.1.v4.1 annot-version=v4.1 MASTSSSTTTPQEKYDVFLSFRGEDTRVCFVSHLYAALKRKQISTFIDYKLNRGEEISPSLLKAIEDSKLSVVVFSDNYASSKWCLEELAKILECKKVKG QMVIPVFYRVDPSHVRNQTGSFADAFARHDQLLKEKMEKVLNWRAAMREAANLSGWDSHNIKSESEFVDDIVRDILNKLHQTSMSTHHTSLIGIDARIKK VETLLKMESQDVRIVGIWGMGGIGKTTIAKAVYDNVSAQFEGFLFVANVREEIKRHSVVGLQKNILPELLDQDILNTGPLSFGNAFVMDRLLRKKVLIVL DDVDSSRQLEELLPEPHVSFGPGSKILLTSRDKQVLTNVVDEIYDVERLNHHEALQLFNMKAFKNYNPTIDHSELVEKIVDYAQGNPLALIVLGSALYGR SKEEWCSVLNKLGKVSSREIQNVLRISYDGLDDEQQEIFLDLAFFFNGANRDRVTKILDGCYSAACLDISVLFEKSLITTPGCTVNMHDSLREMAFSIVR EESKIPGKRSRLCDPEDVYQALVKKKGTEAVEGICLDISESREMHLKSDAFSRMDRLRILKFFNHFSLDEIFIMDNKDKVHLPHSGLDYLSDELRYLHWD GFPLKTLPQSFCAENIVELIFPDSKIEKLWTGVQDLVHLRRMDLSGSPYLLEIPDLSMAENIESINLKFCKSLIEVNPSIQYLTKLEVLQLSYCDNLRSL PSRIGSKVLRILDLYHCINVRICPAISGNSPVLRKVDLQFCANITKFPEISGNIKYLYLQGTAIEEVPSSIEFLTALVRLYMTNCKQLSSIPSSICKLKS LEVLGLSGCSKLENFPEIMEPMESLRRLELDATAIKELPSSIKYLKFLTQLKLGVTAIEELSSSIAQLKSLTHLDLGGTAIKELPSSIEHLKCLKHLDLS GTGIKELPELPSSLTALDVNDCKSLQTLSRFNLRNFQELNFANCFKLDQKKLMADVQCKIQSGEIKGEIFQIVLPKSEIPPWFRGQNMGSSVTKKLPLNC HQIKGIAFCIVFASPTPLLSDCANFSCKCDAKSDNGEHDHVNLLWYDLDPQPKAAVFKLDDSDHMLLWYESTRTGLTSEYSGSEVTFEFYDKIEHSKIKR CGVYFLFDKNRSSSCDEDSSHQDDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17680			disease resistance protein (TI...		Potri.019G068200 [exp]	0	1
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113066 [exp]	1.73	0.8271
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014334 [exp]	4.00	0.8447
AT1G19270		DA1	DA1 (.1)		Potri.002G132700 [exp]	7.74	0.7338
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014340 [exp]	7.74	0.8200
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014364 [exp]	8.48	0.8283
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014324 [exp]	8.77	0.8170
AT4G27220			NB-ARC domain-containing disea...		Potri.018G145538 [exp]	12.64	0.7558
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	15.09	0.7005
AT1G20980	SBP	ATSPL14, SPL1R2...	squamosa promoter binding prot...		Potri.005G258700 [exp]	15.19	0.7766
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014356 [exp]	18.43	0.8202

Compare expression of checked genes

Potri.019G068200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.